RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 RPL35AP18077 110 aaKnown RBP3.62□□□□□ -1.83
VPS29-205ENST00000548539 ELAVL4P26378 380 aaKnown RBP3.62□□□□□ -1.83
VPS29-205ENST00000548539 GJB2P29033 226 aa3.62□□□□□ -1.83
VPS29-205ENST00000548539 NT5C2P49902 561 aa3.62□□□□□ -1.83
VPS29-205ENST00000548539 XGP55808 180 aa3.62□□□□□ -1.83
VPS29-205ENST00000548539 OR1D5P58170 312 aa3.62□□□□□ -1.83
VPS29-205ENST00000548539 DCDC1P59894 354 aa3.62□□□□□ -1.83
VPS29-205ENST00000548539 BTG1P62324 171 aa3.62□□□□□ -1.83
VPS29-205ENST00000548539 RPP38P78345 283 aaKnown RBP3.62□□□□□ -1.83
VPS29-205ENST00000548539 GFPT1Q06210 699 aaPredicted RBP3.62□□□□□ -1.83
VPS29-205ENST00000548539 PTPN14Q15678 1187 aa3.62□□□□□ -1.83
VPS29-205ENST00000548539 FAM72AQ5TYM5 149 aa3.62□□□□□ -1.83
VPS29-205ENST00000548539 AGAP6Q5VW22 663 aa3.62□□□□□ -1.83
VPS29-205ENST00000548539 FAM72DQ6L9T8 149 aa3.62□□□□□ -1.83
VPS29-205ENST00000548539 LEKR1Q6ZMV7 388 aa3.62□□□□□ -1.83
VPS29-205ENST00000548539 TOM1L2Q6ZVM7 507 aa3.62□□□□□ -1.83
VPS29-205ENST00000548539 PRSS42Q7Z5A4 293 aa3.62□□□□□ -1.83
VPS29-205ENST00000548539 FAM72BQ86X60 149 aa3.62□□□□□ -1.83
VPS29-205ENST00000548539 TMEM126BQ8IUX1 230 aa3.62□□□□□ -1.83
VPS29-205ENST00000548539 THEM5Q8N1Q8 247 aa3.62□□□□□ -1.83
VPS29-205ENST00000548539 RAB42Q8N4Z0 105 aa3.62□□□□□ -1.83
VPS29-205ENST00000548539 TRIM58Q8NG06 486 aa3.62□□□□□ -1.83
VPS29-205ENST00000548539 NEK11Q8NG66 645 aa3.62□□□□□ -1.83
VPS29-205ENST00000548539 SMAP2Q8WU79 429 aaPredicted RBP3.62□□□□□ -1.83
VPS29-205ENST00000548539 ZNF501Q96CX3 271 aaPredicted RBP3.62□□□□□ -1.83
VPS29-205ENST00000548539 ZNF486Q96H40 463 aaPredicted RBP3.62□□□□□ -1.83
VPS29-205ENST00000548539 SPATA13Q96N96 652 aa3.62□□□□□ -1.83
VPS29-205ENST00000548539 PGLYRP2Q96PD5 576 aa3.62□□□□□ -1.83
VPS29-205ENST00000548539 NKX3-1Q99801 234 aaPredicted RBP3.62□□□□□ -1.83
VPS29-205ENST00000548539 MTIF3Q9H2K0 278 aaKnown RBP3.62□□□□□ -1.83
VPS29-205ENST00000548539 PNPLA3Q9NST1 481 aa3.62□□□□□ -1.83
VPS29-205ENST00000548539 PANK4Q9NVE7 773 aa3.62□□□□□ -1.83
VPS29-205ENST00000548539 POLKQ9UBT6 870 aa3.62□□□□□ -1.83
VPS29-205ENST00000548539 FETUBQ9UGM5 382 aa3.62□□□□□ -1.83
VPS29-205ENST00000548539 EXOC6BQ9Y2D4 811 aa3.62□□□□□ -1.83
VPS29-205ENST00000548539 ZNF510Q9Y2H8 683 aa3.62□□□□□ -1.83
VPS29-205ENST00000548539 WDR37Q9Y2I8 494 aa3.62□□□□□ -1.83
VPS29-205ENST00000548539 MMP24Q9Y5R2 645 aa3.62□□□□□ -1.83
VPS29-205ENST00000548539 DOCK7Q96N67 2140 aa3.61□□□□□ -1.83
VPS29-205ENST00000548539 SYCE3A1L190 88 aa3.61□□□□□ -1.83
VPS29-205ENST00000548539 FAM149AA5PLN7 773 aa3.61□□□□□ -1.83
VPS29-205ENST00000548539 GLTPD2A6NH11 291 aa3.61□□□□□ -1.83
VPS29-205ENST00000548539 ZNF732B4DXR9 585 aa3.61□□□□□ -1.83
VPS29-205ENST00000548539 HHLA1C9JL84 531 aa3.61□□□□□ -1.83
VPS29-205ENST00000548539 CYTIPO60759 359 aa3.61□□□□□ -1.83
VPS29-205ENST00000548539 SAP30O75446 220 aa3.61□□□□□ -1.83
VPS29-205ENST00000548539 CALCAP01258 141 aa3.61□□□□□ -1.83
VPS29-205ENST00000548539 NUDT17P0C025 328 aa3.61□□□□□ -1.83
VPS29-205ENST00000548539 STMN1P16949 149 aa3.61□□□□□ -1.83
VPS29-205ENST00000548539 SOX3P41225 446 aa3.61□□□□□ -1.83
VPS29-205ENST00000548539 OR3A3P47888 321 aa3.61□□□□□ -1.83
VPS29-205ENST00000548539 LEPRP48357 1165 aaKnown RBP3.61□□□□□ -1.83
VPS29-205ENST00000548539 ARF5P84085 180 aa3.61□□□□□ -1.83
VPS29-205ENST00000548539 GALK2Q01415 458 aa3.61□□□□□ -1.83
VPS29-205ENST00000548539 SLC34A1Q06495 639 aa3.61□□□□□ -1.83
VPS29-205ENST00000548539 SLC3A1Q07837 685 aa3.61□□□□□ -1.83
VPS29-205ENST00000548539 LCP2Q13094 533 aa3.61□□□□□ -1.83
VPS29-205ENST00000548539 SGCGQ13326 291 aa3.61□□□□□ -1.83
VPS29-205ENST00000548539 CDH18Q13634 790 aa3.61□□□□□ -1.83
VPS29-205ENST00000548539 DUSP5Q16690 384 aa3.61□□□□□ -1.83
VPS29-205ENST00000548539 ZNF876PQ49A33 203 aa3.61□□□□□ -1.83
VPS29-205ENST00000548539 LRRC37A5PQ49AS3 106 aa3.61□□□□□ -1.83
VPS29-205ENST00000548539 FGD3Q5JSP0 725 aa3.61□□□□□ -1.83
VPS29-205ENST00000548539 LCE1FQ5T754 118 aa3.61□□□□□ -1.83
VPS29-205ENST00000548539 RAB12Q6IQ22 244 aa3.61□□□□□ -1.83
VPS29-205ENST00000548539 C17orf107Q6ZR85 190 aa3.61□□□□□ -1.83
VPS29-205ENST00000548539 Q6ZSR9 355 aa3.61□□□□□ -1.83
VPS29-205ENST00000548539 HOGA1Q86XE5 327 aa3.61□□□□□ -1.83
VPS29-205ENST00000548539 LAX1Q8IWV1 398 aa3.61□□□□□ -1.83
VPS29-205ENST00000548539 FAM89BQ8N5H3 189 aa3.61□□□□□ -1.83
VPS29-205ENST00000548539 OR5AP2Q8NGF4 316 aa3.61□□□□□ -1.83
VPS29-205ENST00000548539 SEPT8Q92599 483 aa3.61□□□□□ -1.83
VPS29-205ENST00000548539 AZIN2Q96A70 460 aa3.61□□□□□ -1.83
VPS29-205ENST00000548539 C2orf48Q96LS8 159 aa3.61□□□□□ -1.83
VPS29-205ENST00000548539 F2RL3Q96RI0 385 aa3.61□□□□□ -1.83
VPS29-205ENST00000548539 GAL3ST4Q96RP7 486 aa3.61□□□□□ -1.83
VPS29-205ENST00000548539 DDX50Q9BQ39 737 aaKnown RBP3.61□□□□□ -1.83
VPS29-205ENST00000548539 TRIM7Q9C029 511 aa3.61□□□□□ -1.83
VPS29-205ENST00000548539 NAPBQ9H115 298 aa3.61□□□□□ -1.83
VPS29-205ENST00000548539 EXOC1Q9NV70 894 aa3.61□□□□□ -1.83
VPS29-205ENST00000548539 PSORS1C1Q9UIG5 152 aa3.61□□□□□ -1.83
VPS29-205ENST00000548539 MOSPD1Q9UJG1 213 aa3.61□□□□□ -1.83
VPS29-205ENST00000548539 FBXL4Q9UKA2 621 aa3.61□□□□□ -1.83
VPS29-205ENST00000548539 KCNK6Q9Y257 313 aa3.61□□□□□ -1.83
VPS29-205ENST00000548539 MRPS28Q9Y2Q9 187 aaKnown RBP3.61□□□□□ -1.83
VPS29-205ENST00000548539 RPGRIP1LQ68CZ1 1315 aa3.61□□□□□ -1.83
VPS29-205ENST00000548539 SCN5AQ14524 2016 aa3.61□□□□□ -1.83
VPS29-205ENST00000548539 A0A087WW49 117 aa3.6□□□□□ -1.83
VPS29-205ENST00000548539 A0A1W2PR80 420 aa3.6□□□□□ -1.83
VPS29-205ENST00000548539 M0R296 226 aa3.6□□□□□ -1.83
VPS29-205ENST00000548539 MAGEC1O60732 1142 aa3.6□□□□□ -1.83
VPS29-205ENST00000548539 GMNNO75496 209 aa3.6□□□□□ -1.83
VPS29-205ENST00000548539 GRAP2O75791 330 aa3.6□□□□□ -1.83
VPS29-205ENST00000548539 PAK4O96013 591 aaPredicted RBP3.6□□□□□ -1.83
VPS29-205ENST00000548539 AMBPP02760 352 aa3.6□□□□□ -1.83
VPS29-205ENST00000548539 CHRNGP07510 517 aa3.6□□□□□ -1.83
VPS29-205ENST00000548539 GNB3P16520 340 aa3.6□□□□□ -1.83
VPS29-205ENST00000548539 OR3A2P47893 321 aa3.6□□□□□ -1.83
VPS29-205ENST00000548539 SNRPD1P62314 119 aaKnown RBP3.6□□□□□ -1.83
VPS29-205ENST00000548539 CSNK2BP67870 215 aa3.6□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms