RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 ZUFSPQ96AP4 578 aa20.27■□□□□ 0.83
VPS28-212ENST00000530836 TMEM74Q96NL1 305 aa20.27■□□□□ 0.83
VPS28-212ENST00000530836 QRFPRQ96P65 431 aa20.27■□□□□ 0.83
VPS28-212ENST00000530836 OR2A14Q96R47 310 aa20.27■□□□□ 0.83
VPS28-212ENST00000530836 OR51B5Q9H339 312 aa20.27■□□□□ 0.83
VPS28-212ENST00000530836 SPAG4Q9NPE6 437 aa20.27■□□□□ 0.83
VPS28-212ENST00000530836 MAP10Q9P2G4 905 aa20.27■□□□□ 0.83
VPS28-212ENST00000530836 AP1M2Q9Y6Q5 423 aa20.27■□□□□ 0.83
VPS28-212ENST00000530836 FEZF1A0PJY2 475 aa20.26■□□□□ 0.83
VPS28-212ENST00000530836 PCDH7O60245 1069 aa20.26■□□□□ 0.83
VPS28-212ENST00000530836 MGRN1O60291 552 aa20.26■□□□□ 0.83
VPS28-212ENST00000530836 UGT2B7P16662 529 aa20.26■□□□□ 0.83
VPS28-212ENST00000530836 GRIA3P42263 894 aa20.26■□□□□ 0.83
VPS28-212ENST00000530836 MTTPP55157 894 aa20.26■□□□□ 0.83
VPS28-212ENST00000530836 RPS15AP62244 130 aaKnown RBP20.26■□□□□ 0.83
VPS28-212ENST00000530836 C6orf132Q5T0Z8 1188 aa20.26■□□□□ 0.83
VPS28-212ENST00000530836 ZCCHC8Q6NZY4 707 aaKnown RBP20.26■□□□□ 0.83
VPS28-212ENST00000530836 C8orf82Q6P1X6 216 aaPredicted RBP20.26■□□□□ 0.83
VPS28-212ENST00000530836 COMMD6Q7Z4G1 85 aa20.26■□□□□ 0.83
VPS28-212ENST00000530836 NET1Q7Z628 596 aaPredicted RBP20.26■□□□□ 0.83
VPS28-212ENST00000530836 RETREG3Q86VR2 466 aa20.26■□□□□ 0.83
VPS28-212ENST00000530836 C17orf82Q86X59 251 aaPredicted RBP20.26■□□□□ 0.83
VPS28-212ENST00000530836 DEFB124Q8NES8 71 aa20.26■□□□□ 0.83
VPS28-212ENST00000530836 FLVCR1-AS1Q8TAF5 88 aa20.26■□□□□ 0.83
VPS28-212ENST00000530836 VPS33AQ96AX1 596 aa20.26■□□□□ 0.83
VPS28-212ENST00000530836 TSSK3Q96PN8 268 aa20.26■□□□□ 0.83
VPS28-212ENST00000530836 CDC6Q99741 560 aa20.26■□□□□ 0.83
VPS28-212ENST00000530836 MCM8Q9UJA3 840 aa20.26■□□□□ 0.83
VPS28-212ENST00000530836 WBP11Q9Y2W2 641 aaKnown RBP20.26■□□□□ 0.83
VPS28-212ENST00000530836 TDRD6O60522 2096 aaKnown RBP20.25■□□□□ 0.83
VPS28-212ENST00000530836 GNG14A0A1W2PPG7 69 aa20.25■□□□□ 0.83
VPS28-212ENST00000530836 GSAPA4D1B5 854 aa20.25■□□□□ 0.83
VPS28-212ENST00000530836 LILRA5A6NI73 299 aa20.25■□□□□ 0.83
VPS28-212ENST00000530836 ZW10O43264 779 aa20.25■□□□□ 0.83
VPS28-212ENST00000530836 PGRP06401 933 aa20.25■□□□□ 0.83
VPS28-212ENST00000530836 POLR2CP19387 275 aaPredicted RBP20.25■□□□□ 0.83
VPS28-212ENST00000530836 TACR1P25103 407 aa20.25■□□□□ 0.83
VPS28-212ENST00000530836 RPL3P39023 403 aaKnown RBP20.25■□□□□ 0.83
VPS28-212ENST00000530836 GSTM5P46439 218 aa20.25■□□□□ 0.83
VPS28-212ENST00000530836 RAE1P78406 368 aaKnown RBP20.25■□□□□ 0.83
VPS28-212ENST00000530836 SRSF11Q05519 484 aaKnown RBP20.25■□□□□ 0.83
VPS28-212ENST00000530836 ZNF763Q0D2J5 394 aa20.25■□□□□ 0.83
VPS28-212ENST00000530836 BIRC2Q13490 618 aa20.25■□□□□ 0.83
VPS28-212ENST00000530836 TRMT5Q32P41 509 aaKnown RBP20.25■□□□□ 0.83
VPS28-212ENST00000530836 PROX2Q3B8N5 592 aa20.25■□□□□ 0.83
VPS28-212ENST00000530836 FAM174BQ3ZCQ3 159 aa20.25■□□□□ 0.83
VPS28-212ENST00000530836 SPATS1Q496A3 300 aa20.25■□□□□ 0.83
VPS28-212ENST00000530836 ARMC6Q6NXE6 501 aa20.25■□□□□ 0.83
VPS28-212ENST00000530836 PAQR7Q86WK9 346 aa20.25■□□□□ 0.83
VPS28-212ENST00000530836 RIMKLAQ8IXN7 391 aa20.25■□□□□ 0.83
VPS28-212ENST00000530836 ARL14Q8N4G2 192 aa20.25■□□□□ 0.83
VPS28-212ENST00000530836 MFSD9Q8NBP5 474 aa20.25■□□□□ 0.83
VPS28-212ENST00000530836 GPR156Q8NFN8 814 aa20.25■□□□□ 0.83
VPS28-212ENST00000530836 OR10G6Q8NH81 332 aa20.25■□□□□ 0.83
VPS28-212ENST00000530836 SLC13A3Q8WWT9 602 aa20.25■□□□□ 0.83
VPS28-212ENST00000530836 THAP11Q96EK4 314 aa20.25■□□□□ 0.83
VPS28-212ENST00000530836 CDRT15Q96T59 188 aa20.25■□□□□ 0.83
VPS28-212ENST00000530836 EBPLQ9BY08 206 aa20.25■□□□□ 0.83
VPS28-212ENST00000530836 RASSF4Q9H2L5 321 aa20.25■□□□□ 0.83
VPS28-212ENST00000530836 HRASLS2Q9NWW9 162 aa20.25■□□□□ 0.83
VPS28-212ENST00000530836 SLC7A8Q9UHI5 535 aa20.25■□□□□ 0.83
VPS28-212ENST00000530836 PCDHGA7Q9Y5G6 932 aa20.25■□□□□ 0.83
VPS28-212ENST00000530836 C15orf38-AP3S2A0A0A6YYH1 394 aa20.24■□□□□ 0.83
VPS28-212ENST00000530836 C9JVG2 144 aa20.24■□□□□ 0.83
VPS28-212ENST00000530836 LDOC1O95751 146 aaPredicted RBP20.24■□□□□ 0.83
VPS28-212ENST00000530836 NFYCQ13952 458 aa20.24■□□□□ 0.83
VPS28-212ENST00000530836 SPESP1Q6UW49 350 aa20.24■□□□□ 0.83
VPS28-212ENST00000530836 ARPINQ7Z6K5 226 aa20.24■□□□□ 0.83
VPS28-212ENST00000530836 CREB3L4Q8TEY5 395 aa20.24■□□□□ 0.83
VPS28-212ENST00000530836 RGMAQ96B86 450 aa20.24■□□□□ 0.83
VPS28-212ENST00000530836 LRRC58Q96CX6 371 aa20.24■□□□□ 0.83
VPS28-212ENST00000530836 CNDP2Q96KP4 475 aaKnown RBP20.24■□□□□ 0.83
VPS28-212ENST00000530836 PRPF18Q99633 342 aaKnown RBP20.24■□□□□ 0.83
VPS28-212ENST00000530836 GPATCH1Q9BRR8 931 aaKnown RBP20.24■□□□□ 0.83
VPS28-212ENST00000530836 RMND5AQ9H871 391 aa20.24■□□□□ 0.83
VPS28-212ENST00000530836 FTSJ1Q9UET6 329 aa20.24■□□□□ 0.83
VPS28-212ENST00000530836 ADAM29Q9UKF5 820 aa20.24■□□□□ 0.83
VPS28-212ENST00000530836 ARID1BQ8NFD5 2236 aaPredicted RBP20.24■□□□□ 0.83
VPS28-212ENST00000530836 OR2A25A4D2G3 310 aa20.24■□□□□ 0.83
VPS28-212ENST00000530836 OR5K3A6NET4 321 aa20.24■□□□□ 0.83
VPS28-212ENST00000530836 HAT1O14929 419 aa20.24■□□□□ 0.83
VPS28-212ENST00000530836 LCMT2O60294 686 aaKnown RBP20.24■□□□□ 0.83
VPS28-212ENST00000530836 NOBOXO60393 691 aa20.24■□□□□ 0.83
VPS28-212ENST00000530836 CEACAM1P13688 526 aa20.24■□□□□ 0.83
VPS28-212ENST00000530836 S100A3P33764 101 aa20.24■□□□□ 0.83
VPS28-212ENST00000530836 HPCAL1P37235 193 aa20.24■□□□□ 0.83
VPS28-212ENST00000530836 BCL6P41182 706 aa20.24■□□□□ 0.83
VPS28-212ENST00000530836 TRIP6Q15654 476 aaKnown RBP20.24■□□□□ 0.83
VPS28-212ENST00000530836 MAPKAPK3Q16644 382 aa20.24■□□□□ 0.83
VPS28-212ENST00000530836 IKBIPQ70UQ0 350 aa20.24■□□□□ 0.83
VPS28-212ENST00000530836 C10orf67Q8IYJ2 551 aa20.24■□□□□ 0.83
VPS28-212ENST00000530836 KRTCAP2Q8N6L1 136 aa20.24■□□□□ 0.83
VPS28-212ENST00000530836 SRFBP1Q8NEF9 429 aaKnown RBP20.24■□□□□ 0.83
VPS28-212ENST00000530836 CLHC1Q8NHS4 586 aa20.24■□□□□ 0.83
VPS28-212ENST00000530836 PCDHGA4Q9Y5G9 962 aa20.24■□□□□ 0.83
VPS28-212ENST00000530836 A0A0J9YY10 115 aa20.23■□□□□ 0.83
VPS28-212ENST00000530836 ASPDHA6ND91 283 aa20.23■□□□□ 0.83
VPS28-212ENST00000530836 SH3BGRLO75368 114 aa20.23■□□□□ 0.83
VPS28-212ENST00000530836 CYP4F2P78329 520 aa20.23■□□□□ 0.83
VPS28-212ENST00000530836 PUM1Q14671 1186 aaKnown RBP eCLIP20.23■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms