RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 SH3BGRLO75368 114 aa28.16■■■□□ 2.1
LIMCH1-211ENST00000509638 ZNF888P0CJ79 500 aaPredicted RBP28.16■■■□□ 2.1
LIMCH1-211ENST00000509638 RORAP35398 523 aa28.16■■■□□ 2.1
LIMCH1-211ENST00000509638 HTR6P50406 440 aa28.16■■■□□ 2.1
LIMCH1-211ENST00000509638 STXBP1P61764 594 aaKnown RBP28.16■■■□□ 2.1
LIMCH1-211ENST00000509638 RPS13P62277 151 aaKnown RBP28.16■■■□□ 2.1
LIMCH1-211ENST00000509638 NDUFA9Q16795 377 aa28.16■■■□□ 2.1
LIMCH1-211ENST00000509638 METTL27Q8N6F8 245 aaPredicted RBP28.16■■■□□ 2.1
LIMCH1-211ENST00000509638 SPRY4Q9C004 299 aa28.16■■■□□ 2.1
LIMCH1-211ENST00000509638 C20orf27Q9GZN8 174 aa28.16■■■□□ 2.1
LIMCH1-211ENST00000509638 MANSC1Q9H8J5 431 aa28.16■■■□□ 2.1
LIMCH1-211ENST00000509638 APC2O95996 2303 aa28.16■■■□□ 2.1
LIMCH1-211ENST00000509638 AZIN1O14977 448 aa28.16■■■□□ 2.1
LIMCH1-211ENST00000509638 TGFB1P01137 390 aa28.16■■■□□ 2.1
LIMCH1-211ENST00000509638 PDYNP01213 254 aa28.16■■■□□ 2.1
LIMCH1-211ENST00000509638 UROSP10746 265 aa28.16■■■□□ 2.1
LIMCH1-211ENST00000509638 ALAS2P22557 587 aa28.16■■■□□ 2.1
LIMCH1-211ENST00000509638 ATG16L1Q676U5 607 aa28.16■■■□□ 2.1
LIMCH1-211ENST00000509638 ARFGAP2Q8N6H7 521 aa28.16■■■□□ 2.1
LIMCH1-211ENST00000509638 CMTM7Q96FZ5 175 aa28.16■■■□□ 2.1
LIMCH1-211ENST00000509638 REXO4Q9GZR2 422 aaKnown RBP28.16■■■□□ 2.1
LIMCH1-211ENST00000509638 URADA6NGE7 173 aa28.15■■■□□ 2.1
LIMCH1-211ENST00000509638 C4orf51C9J302 202 aa28.15■■■□□ 2.1
LIMCH1-211ENST00000509638 FOXE1O00358 373 aaPredicted RBP28.15■■■□□ 2.1
LIMCH1-211ENST00000509638 IL1RNP18510 177 aa28.15■■■□□ 2.1
LIMCH1-211ENST00000509638 ADPRMQ3LIE5 342 aa28.15■■■□□ 2.1
LIMCH1-211ENST00000509638 KANK2Q63ZY3 851 aa28.15■■■□□ 2.1
LIMCH1-211ENST00000509638 ABHD13Q7L211 337 aa28.15■■■□□ 2.1
LIMCH1-211ENST00000509638 PRSS41Q7RTY9 318 aa28.15■■■□□ 2.1
LIMCH1-211ENST00000509638 TIPARPQ7Z3E1 657 aaKnown RBP28.15■■■□□ 2.1
LIMCH1-211ENST00000509638 PROKR1Q8TCW9 393 aa28.15■■■□□ 2.1
LIMCH1-211ENST00000509638 GAL3ST3Q96A11 431 aa28.15■■■□□ 2.1
LIMCH1-211ENST00000509638 MS4A6EQ96DS6 147 aa28.15■■■□□ 2.1
LIMCH1-211ENST00000509638 LRFN5Q96NI6 719 aa28.15■■■□□ 2.1
LIMCH1-211ENST00000509638 GBP5Q96PP8 586 aa28.15■■■□□ 2.1
LIMCH1-211ENST00000509638 F2RL3Q96RI0 385 aa28.15■■■□□ 2.1
LIMCH1-211ENST00000509638 SORT1Q99523 831 aa28.15■■■□□ 2.1
LIMCH1-211ENST00000509638 OR51B5Q9H339 312 aa28.15■■■□□ 2.1
LIMCH1-211ENST00000509638 SLC22A7Q9Y694 548 aa28.15■■■□□ 2.1
LIMCH1-211ENST00000509638 IQCJ-SCHIP1C9J366 451 aaPredicted RBP28.14■■■□□ 2.1
LIMCH1-211ENST00000509638 ULK1O75385 1050 aa28.14■■■□□ 2.1
LIMCH1-211ENST00000509638 ATXN8OSP0DMR3 200 aa28.14■■■□□ 2.1
LIMCH1-211ENST00000509638 SERPINB3P29508 390 aa28.14■■■□□ 2.1
LIMCH1-211ENST00000509638 C6orf15Q6UXA7 325 aaPredicted RBP28.14■■■□□ 2.1
LIMCH1-211ENST00000509638 DSELQ8IZU8 1212 aa28.14■■■□□ 2.1
LIMCH1-211ENST00000509638 UTP15Q8TED0 518 aaKnown RBP28.14■■■□□ 2.1
LIMCH1-211ENST00000509638 TMEM121BQ9BXQ6 578 aaPredicted RBP28.14■■■□□ 2.1
LIMCH1-211ENST00000509638 DMXL2Q8TDJ6 3036 aa28.13■■■□□ 2.09
LIMCH1-211ENST00000509638 MEN1O00255 615 aa28.13■■■□□ 2.09
LIMCH1-211ENST00000509638 ERI3O43414 337 aaKnown RBP28.13■■■□□ 2.09
LIMCH1-211ENST00000509638 SNNO75324 88 aaPredicted RBP28.13■■■□□ 2.09
LIMCH1-211ENST00000509638 ETHE1O95571 254 aa28.13■■■□□ 2.09
LIMCH1-211ENST00000509638 RAB8AP61006 207 aa28.13■■■□□ 2.09
LIMCH1-211ENST00000509638 FAM53BQ14153 422 aa28.13■■■□□ 2.09
LIMCH1-211ENST00000509638 ABRAXAS2Q15018 415 aa28.13■■■□□ 2.09
LIMCH1-211ENST00000509638 HERC3Q15034 1050 aa28.13■■■□□ 2.09
LIMCH1-211ENST00000509638 KHDRBS2Q5VWX1 349 aaKnown RBP28.13■■■□□ 2.09
LIMCH1-211ENST00000509638 ZNF385CQ66K41 422 aaPredicted RBP28.13■■■□□ 2.09
LIMCH1-211ENST00000509638 ZNF781Q8N8C0 355 aa28.13■■■□□ 2.09
LIMCH1-211ENST00000509638 LRRC8CQ8TDW0 803 aa28.13■■■□□ 2.09
LIMCH1-211ENST00000509638 ZNF75CPQ92670 426 aaPredicted RBP28.13■■■□□ 2.09
LIMCH1-211ENST00000509638 MVB12AQ96EY5 273 aa28.13■■■□□ 2.09
LIMCH1-211ENST00000509638 ZDHHC2Q9UIJ5 367 aa28.13■■■□□ 2.09
LIMCH1-211ENST00000509638 PPT2Q9UMR5 302 aa28.13■■■□□ 2.09
LIMCH1-211ENST00000509638 TRAF6Q9Y4K3 522 aa28.13■■■□□ 2.09
LIMCH1-211ENST00000509638 ACACAQ13085 2346 aa28.13■■■□□ 2.09
LIMCH1-211ENST00000509638 A0A0A6YYC8 382 aaPredicted RBP28.12■■■□□ 2.09
LIMCH1-211ENST00000509638 I3L1I5 382 aaPredicted RBP28.12■■■□□ 2.09
LIMCH1-211ENST00000509638 SAP18O00422 153 aaKnown RBP28.12■■■□□ 2.09
LIMCH1-211ENST00000509638 KLF11O14901 512 aa28.12■■■□□ 2.09
LIMCH1-211ENST00000509638 FOXS1O43638 330 aa28.12■■■□□ 2.09
LIMCH1-211ENST00000509638 SNUPNO95149 360 aaKnown RBP28.12■■■□□ 2.09
LIMCH1-211ENST00000509638 ALOX12P18054 663 aa28.12■■■□□ 2.09
LIMCH1-211ENST00000509638 ITGAXP20702 1163 aa28.12■■■□□ 2.09
LIMCH1-211ENST00000509638 DEFB134Q4QY38 66 aa28.12■■■□□ 2.09
LIMCH1-211ENST00000509638 TRIM40Q6P9F5 258 aa28.12■■■□□ 2.09
LIMCH1-211ENST00000509638 PDSS2Q86YH6 399 aa28.12■■■□□ 2.09
LIMCH1-211ENST00000509638 AFAP1L2Q8N4X5 818 aa28.12■■■□□ 2.09
LIMCH1-211ENST00000509638 OR2L5Q8NG80 312 aa28.12■■■□□ 2.09
LIMCH1-211ENST00000509638 OR9A4Q8NGU2 314 aa28.12■■■□□ 2.09
LIMCH1-211ENST00000509638 C17orf62Q9BQA9 187 aa28.12■■■□□ 2.09
LIMCH1-211ENST00000509638 BRF2Q9HAW0 419 aa28.12■■■□□ 2.09
LIMCH1-211ENST00000509638 ANKHQ9HCJ1 492 aa28.12■■■□□ 2.09
LIMCH1-211ENST00000509638 THAP1Q9NVV9 213 aa28.12■■■□□ 2.09
LIMCH1-211ENST00000509638 RAP2CQ9Y3L5 183 aa28.12■■■□□ 2.09
LIMCH1-211ENST00000509638 A0A0G2JN53 185 aa28.11■■■□□ 2.09
LIMCH1-211ENST00000509638 RAD1O60671 282 aa28.11■■■□□ 2.09
LIMCH1-211ENST00000509638 B3GALT4O96024 378 aa28.11■■■□□ 2.09
LIMCH1-211ENST00000509638 PLA2G16P53816 162 aa28.11■■■□□ 2.09
LIMCH1-211ENST00000509638 ABHD18Q0P651 414 aa28.11■■■□□ 2.09
LIMCH1-211ENST00000509638 MAP7Q14244 749 aa28.11■■■□□ 2.09
LIMCH1-211ENST00000509638 TMEM35AQ53FP2 167 aa28.11■■■□□ 2.09
LIMCH1-211ENST00000509638 SCIMPQ6UWF3 145 aa28.11■■■□□ 2.09
LIMCH1-211ENST00000509638 CHSY3Q70JA7 882 aa28.11■■■□□ 2.09
LIMCH1-211ENST00000509638 NLGN4XQ8N0W4 816 aa28.11■■■□□ 2.09
LIMCH1-211ENST00000509638 ESX1Q8N693 406 aa28.11■■■□□ 2.09
LIMCH1-211ENST00000509638 NLGN4YQ8NFZ3 816 aaPredicted RBP28.11■■■□□ 2.09
LIMCH1-211ENST00000509638 CCDC86Q9H6F5 360 aaKnown RBP28.11■■■□□ 2.09
LIMCH1-211ENST00000509638 NAALAD2Q9Y3Q0 740 aa28.11■■■□□ 2.09
LIMCH1-211ENST00000509638 MAU2Q9Y6X3 613 aa28.11■■■□□ 2.09
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms