RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 SIM2Q14190 667 aaPredicted RBP8.36□□□□□ -1.07
LIMCH1-209ENST00000509277 ZNF267Q14586 743 aaPredicted RBP8.36□□□□□ -1.07
LIMCH1-209ENST00000509277 ISCA2Q86U28 154 aa8.36□□□□□ -1.07
LIMCH1-209ENST00000509277 SYNPOQ8N3V7 929 aa8.36□□□□□ -1.07
LIMCH1-209ENST00000509277 GALNT6Q8NCL4 622 aa8.36□□□□□ -1.07
LIMCH1-209ENST00000509277 OR7G1Q8NGA0 311 aa8.36□□□□□ -1.07
LIMCH1-209ENST00000509277 FBXO30Q8TB52 745 aa8.36□□□□□ -1.07
LIMCH1-209ENST00000509277 NDNFQ8TB73 568 aa8.36□□□□□ -1.07
LIMCH1-209ENST00000509277 MCOLN3Q8TDD5 553 aa8.36□□□□□ -1.07
LIMCH1-209ENST00000509277 CXorf40BQ96DE9 158 aa8.36□□□□□ -1.07
LIMCH1-209ENST00000509277 P2RY12Q9H244 342 aa8.36□□□□□ -1.07
LIMCH1-209ENST00000509277 APOBEC3BQ9UH17 382 aaKnown RBP8.36□□□□□ -1.07
LIMCH1-209ENST00000509277 ZDHHC2Q9UIJ5 367 aa8.36□□□□□ -1.07
LIMCH1-209ENST00000509277 ZNF221Q9UK13 617 aa8.36□□□□□ -1.07
LIMCH1-209ENST00000509277 MYO1GB0I1T2 1018 aa8.36□□□□□ -1.07
LIMCH1-209ENST00000509277 PRAMEF26H0Y7S4 382 aa8.36□□□□□ -1.07
LIMCH1-209ENST00000509277 SEC16AO15027 2179 aa8.36□□□□□ -1.07
LIMCH1-209ENST00000509277 HS6ST1O60243 411 aa8.36□□□□□ -1.07
LIMCH1-209ENST00000509277 WDR47O94967 919 aa8.36□□□□□ -1.07
LIMCH1-209ENST00000509277 CSF2P04141 144 aa8.36□□□□□ -1.07
LIMCH1-209ENST00000509277 TYRP1P17643 537 aa8.36□□□□□ -1.07
LIMCH1-209ENST00000509277 HTR2BP41595 481 aa8.36□□□□□ -1.07
LIMCH1-209ENST00000509277 SRP54P61011 504 aaKnown RBP8.36□□□□□ -1.07
LIMCH1-209ENST00000509277 TP53BP2Q13625 1128 aa8.36□□□□□ -1.07
LIMCH1-209ENST00000509277 ZNF547Q8IVP9 402 aa8.36□□□□□ -1.07
LIMCH1-209ENST00000509277 HS3ST5Q8IZT8 346 aa8.36□□□□□ -1.07
LIMCH1-209ENST00000509277 SFRP1Q8N474 314 aa8.36□□□□□ -1.07
LIMCH1-209ENST00000509277 CELF2-AS1Q8N7Q2 184 aa8.36□□□□□ -1.07
LIMCH1-209ENST00000509277 MCFD2Q8NI22 146 aa8.36□□□□□ -1.07
LIMCH1-209ENST00000509277 TFGQ92734 400 aaPredicted RBP8.36□□□□□ -1.07
LIMCH1-209ENST00000509277 RPL3LQ92901 407 aaKnown RBP8.36□□□□□ -1.07
LIMCH1-209ENST00000509277 MRPL57Q9BQC6 102 aaKnown RBP8.36□□□□□ -1.07
LIMCH1-209ENST00000509277 FUNDC2Q9BWH2 189 aa8.36□□□□□ -1.07
LIMCH1-209ENST00000509277 MID1IP1Q9NPA3 183 aa8.36□□□□□ -1.07
LIMCH1-209ENST00000509277 FETUBQ9UGM5 382 aa8.36□□□□□ -1.07
LIMCH1-209ENST00000509277 PSME2Q9UL46 239 aa8.36□□□□□ -1.07
LIMCH1-209ENST00000509277 RIMKLBQ9ULI2 386 aa8.36□□□□□ -1.07
LIMCH1-209ENST00000509277 BTRCQ9Y297 605 aa8.36□□□□□ -1.07
LIMCH1-209ENST00000509277 KLHL20Q9Y2M5 609 aa8.36□□□□□ -1.07
LIMCH1-209ENST00000509277 COPG1Q9Y678 874 aaKnown RBP8.36□□□□□ -1.07
LIMCH1-209ENST00000509277 A8MT66 165 aa8.35□□□□□ -1.07
LIMCH1-209ENST00000509277 UBDO15205 165 aa8.35□□□□□ -1.07
LIMCH1-209ENST00000509277 HDAC3O15379 428 aa8.35□□□□□ -1.07
LIMCH1-209ENST00000509277 AP1G1O43747 822 aa8.35□□□□□ -1.07
LIMCH1-209ENST00000509277 CATP04040 527 aaKnown RBP8.35□□□□□ -1.07
LIMCH1-209ENST00000509277 IDSP22304 550 aa8.35□□□□□ -1.07
LIMCH1-209ENST00000509277 CD38P28907 300 aa8.35□□□□□ -1.07
LIMCH1-209ENST00000509277 HNF4AP41235 474 aa8.35□□□□□ -1.07
LIMCH1-209ENST00000509277 MAP2K4P45985 399 aa8.35□□□□□ -1.07
LIMCH1-209ENST00000509277 RPL14P50914 215 aaKnown RBP8.35□□□□□ -1.07
LIMCH1-209ENST00000509277 TIAL1Q01085 375 aaKnown RBP eCLIP8.35□□□□□ -1.07
LIMCH1-209ENST00000509277 MEF2AQ02078 507 aaPredicted RBP8.35□□□□□ -1.07
LIMCH1-209ENST00000509277 NHSL2Q5HYW2 709 aa8.35□□□□□ -1.07
LIMCH1-209ENST00000509277 DESI1Q6ICB0 168 aa8.35□□□□□ -1.07
LIMCH1-209ENST00000509277 SPESP1Q6UW49 350 aa8.35□□□□□ -1.07
LIMCH1-209ENST00000509277 GCNT7Q6ZNI0 430 aa8.35□□□□□ -1.07
LIMCH1-209ENST00000509277 R3HCC1LQ7Z5L2 792 aaKnown RBP8.35□□□□□ -1.07
LIMCH1-209ENST00000509277 TBC1D21Q8IYX1 336 aa8.35□□□□□ -1.07
LIMCH1-209ENST00000509277 ACMSDQ8TDX5 336 aa8.35□□□□□ -1.07
LIMCH1-209ENST00000509277 VPS35Q96QK1 796 aa8.35□□□□□ -1.07
LIMCH1-209ENST00000509277 OR2M4Q96R27 311 aa8.35□□□□□ -1.07
LIMCH1-209ENST00000509277 KCNA7Q96RP8 456 aa8.35□□□□□ -1.07
LIMCH1-209ENST00000509277 TBCDQ9BTW9 1192 aa8.35□□□□□ -1.07
LIMCH1-209ENST00000509277 FAM86C1Q9NVL1 165 aa8.35□□□□□ -1.07
LIMCH1-209ENST00000509277 STMN3Q9NZ72 180 aa8.35□□□□□ -1.07
LIMCH1-209ENST00000509277 ANKRD6Q9Y2G4 727 aa8.35□□□□□ -1.07
LIMCH1-209ENST00000509277 KMOO15229 486 aa8.35□□□□□ -1.07
LIMCH1-209ENST00000509277 NUAK1O60285 661 aa8.35□□□□□ -1.07
LIMCH1-209ENST00000509277 CEACAM5P06731 702 aa8.35□□□□□ -1.07
LIMCH1-209ENST00000509277 CYP2A7P20853 494 aa8.35□□□□□ -1.07
LIMCH1-209ENST00000509277 KELP23276 732 aa8.35□□□□□ -1.07
LIMCH1-209ENST00000509277 OXTRP30559 389 aa8.35□□□□□ -1.07
LIMCH1-209ENST00000509277 CPSF6Q16630 551 aaKnown RBP eCLIP8.35□□□□□ -1.07
LIMCH1-209ENST00000509277 LYSMD4Q5XG99 296 aa8.35□□□□□ -1.07
LIMCH1-209ENST00000509277 CYP2U1Q7Z449 544 aa8.35□□□□□ -1.07
LIMCH1-209ENST00000509277 ANKRD13BQ86YJ7 626 aa8.35□□□□□ -1.07
LIMCH1-209ENST00000509277 PGAM4Q8N0Y7 254 aa8.35□□□□□ -1.07
LIMCH1-209ENST00000509277 CDYL2Q8N8U2 506 aa8.35□□□□□ -1.07
LIMCH1-209ENST00000509277 ASCC1Q8N9N2 400 aaKnown RBP8.35□□□□□ -1.07
LIMCH1-209ENST00000509277 HCAR2Q8TDS4 363 aa8.35□□□□□ -1.07
LIMCH1-209ENST00000509277 DLG3Q92796 817 aa8.35□□□□□ -1.07
LIMCH1-209ENST00000509277 SH3YL1Q96HL8 342 aaPredicted RBP8.35□□□□□ -1.07
LIMCH1-209ENST00000509277 ASB1Q9Y576 335 aa8.35□□□□□ -1.07
LIMCH1-209ENST00000509277 PTGDR2Q9Y5Y4 395 aa8.35□□□□□ -1.07
LIMCH1-209ENST00000509277 A0A1W2PPC4 97 aa8.35□□□□□ -1.07
LIMCH1-209ENST00000509277 MGAT4DA6NG13 374 aa8.35□□□□□ -1.07
LIMCH1-209ENST00000509277 BCAS1O75363 584 aaPredicted RBP8.35□□□□□ -1.07
LIMCH1-209ENST00000509277 EPN2O95208 641 aa8.35□□□□□ -1.07
LIMCH1-209ENST00000509277 ITIH1P19827 911 aa8.35□□□□□ -1.07
LIMCH1-209ENST00000509277 AGXTP21549 392 aa8.35□□□□□ -1.07
LIMCH1-209ENST00000509277 ATP5F1P24539 256 aaPredicted RBP8.35□□□□□ -1.07
LIMCH1-209ENST00000509277 S100A5P33763 92 aa8.35□□□□□ -1.07
LIMCH1-209ENST00000509277 POLR2IP36954 125 aaKnown RBP8.35□□□□□ -1.07
LIMCH1-209ENST00000509277 SERPINB10P48595 397 aa8.35□□□□□ -1.07
LIMCH1-209ENST00000509277 SUOXP51687 545 aa8.35□□□□□ -1.07
LIMCH1-209ENST00000509277 SLC18A1P54219 525 aa8.35□□□□□ -1.07
LIMCH1-209ENST00000509277 DCDC1P59894 354 aa8.35□□□□□ -1.07
LIMCH1-209ENST00000509277 POU6F2P78424 691 aaPredicted RBP8.35□□□□□ -1.07
LIMCH1-209ENST00000509277 NFATC4Q14934 902 aa8.35□□□□□ -1.07
LIMCH1-209ENST00000509277 NDUFA5Q16718 116 aa8.35□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms