RNA–Protein interactions for RNA: ENST00000477528.5

HDAC6-220, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 4,832 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-220ENST00000477528 LINC00471Q8N535 108 aa14.1□□□□□ -0.15
HDAC6-220ENST00000477528 CNIH3Q8TBE1 160 aa14.1□□□□□ -0.15
HDAC6-220ENST00000477528 DNASE1L2Q92874 299 aa14.1□□□□□ -0.15
HDAC6-220ENST00000477528 LMLNQ96KR4 655 aa14.1□□□□□ -0.15
HDAC6-220ENST00000477528 RIPOR3Q96MK2 946 aa14.1□□□□□ -0.15
HDAC6-220ENST00000477528 PKMYT1Q99640 499 aa14.1□□□□□ -0.15
HDAC6-220ENST00000477528 DPH2Q9BQC3 489 aaPredicted RBP14.1□□□□□ -0.15
HDAC6-220ENST00000477528 UCK2Q9BZX2 261 aa14.1□□□□□ -0.15
HDAC6-220ENST00000477528 MAN2B2Q9Y2E5 1009 aa14.1□□□□□ -0.15
HDAC6-220ENST00000477528 PCDHA9Q9Y5H5 950 aa14.1□□□□□ -0.15
HDAC6-220ENST00000477528 MCM3APO60318 1980 aa14.1□□□□□ -0.15
HDAC6-220ENST00000477528 CASKO14936 926 aa14.1□□□□□ -0.15
HDAC6-220ENST00000477528 XPNPEP2O43895 674 aa14.1□□□□□ -0.15
HDAC6-220ENST00000477528 IFNGP01579 166 aa14.1□□□□□ -0.15
HDAC6-220ENST00000477528 KLHL22Q53GT1 634 aa14.1□□□□□ -0.15
HDAC6-220ENST00000477528 C2orf27AQ580R0 203 aa14.1□□□□□ -0.15
HDAC6-220ENST00000477528 NXPE4Q6UWF7 544 aa14.1□□□□□ -0.15
HDAC6-220ENST00000477528 RSPO2Q6UXX9 243 aaPredicted RBP14.1□□□□□ -0.15
HDAC6-220ENST00000477528 TMPRSS11AQ6ZMR5 421 aa14.1□□□□□ -0.15
HDAC6-220ENST00000477528 USP30Q70CQ3 517 aa14.1□□□□□ -0.15
HDAC6-220ENST00000477528 FUNDC1Q8IVP5 155 aa14.1□□□□□ -0.15
HDAC6-220ENST00000477528 NETO1Q8TDF5 533 aa14.1□□□□□ -0.15
HDAC6-220ENST00000477528 INPP5KQ9BT40 448 aa14.1□□□□□ -0.15
HDAC6-220ENST00000477528 PDFQ9HBH1 243 aa14.1□□□□□ -0.15
HDAC6-220ENST00000477528 MAP10Q9P2G4 905 aa14.1□□□□□ -0.15
HDAC6-220ENST00000477528 SLC30A4O14863 429 aa14.1□□□□□ -0.15
HDAC6-220ENST00000477528 INMTO95050 263 aa14.1□□□□□ -0.15
HDAC6-220ENST00000477528 NUDT14O95848 222 aa14.1□□□□□ -0.15
HDAC6-220ENST00000477528 F11P03951 625 aa14.1□□□□□ -0.15
HDAC6-220ENST00000477528 IL3P08700 152 aa14.1□□□□□ -0.15
HDAC6-220ENST00000477528 SBK3P0C264 359 aa14.1□□□□□ -0.15
HDAC6-220ENST00000477528 LAMP1P11279 417 aa14.1□□□□□ -0.15
HDAC6-220ENST00000477528 SDC1P18827 310 aa14.1□□□□□ -0.15
HDAC6-220ENST00000477528 BMPR1AP36894 532 aa14.1□□□□□ -0.15
HDAC6-220ENST00000477528 WDR5P61964 334 aaKnown RBP14.1□□□□□ -0.15
HDAC6-220ENST00000477528 STX4Q12846 297 aa14.1□□□□□ -0.15
HDAC6-220ENST00000477528 BHLHA9Q7RTU4 235 aa14.1□□□□□ -0.15
HDAC6-220ENST00000477528 CLECL1Q8IZS7 167 aa14.1□□□□□ -0.15
HDAC6-220ENST00000477528 OR5P2Q8WZ92 322 aa14.1□□□□□ -0.15
HDAC6-220ENST00000477528 DCSTAMPQ9H295 470 aa14.1□□□□□ -0.15
HDAC6-220ENST00000477528 FBXL12Q9NXK8 326 aa14.1□□□□□ -0.15
HDAC6-220ENST00000477528 NDUFS4O43181 175 aa14.09□□□□□ -0.15
HDAC6-220ENST00000477528 C6P13671 934 aa14.09□□□□□ -0.15
HDAC6-220ENST00000477528 MTHFD2P13995 350 aa14.09□□□□□ -0.15
HDAC6-220ENST00000477528 AOAHP28039 575 aa14.09□□□□□ -0.15
HDAC6-220ENST00000477528 ACTR1BP42025 376 aa14.09□□□□□ -0.15
HDAC6-220ENST00000477528 SEPHS1P49903 392 aa14.09□□□□□ -0.15
HDAC6-220ENST00000477528 NUDT6P53370 316 aa14.09□□□□□ -0.15
HDAC6-220ENST00000477528 ACTR1AP61163 376 aa14.09□□□□□ -0.15
HDAC6-220ENST00000477528 PTPRRQ15256 657 aa14.09□□□□□ -0.15
HDAC6-220ENST00000477528 CRB2Q5IJ48 1285 aa14.09□□□□□ -0.15
HDAC6-220ENST00000477528 SLITRK2Q9H156 845 aa14.09□□□□□ -0.15
HDAC6-220ENST00000477528 UBAP1Q9NZ09 502 aa14.09□□□□□ -0.15
HDAC6-220ENST00000477528 IL37Q9NZH6 218 aa14.09□□□□□ -0.15
HDAC6-220ENST00000477528 SNX7Q9UNH6 387 aa14.09□□□□□ -0.15
HDAC6-220ENST00000477528 KCNK6Q9Y257 313 aa14.09□□□□□ -0.15
HDAC6-220ENST00000477528 HSPE1-MOB4S4R3N1 261 aa14.09□□□□□ -0.15
HDAC6-220ENST00000477528 GOLGA4Q13439 2230 aaKnown RBP14.09□□□□□ -0.15
HDAC6-220ENST00000477528 CCDC182A6NF36 153 aa14.09□□□□□ -0.15
HDAC6-220ENST00000477528 ZNF182P17025 639 aaPredicted RBP14.09□□□□□ -0.15
HDAC6-220ENST00000477528 HMGA1P17096 107 aaKnown RBP14.09□□□□□ -0.15
HDAC6-220ENST00000477528 IST1P53990 364 aa14.09□□□□□ -0.15
HDAC6-220ENST00000477528 SHQ1Q6PI26 577 aaKnown RBP14.09□□□□□ -0.15
HDAC6-220ENST00000477528 FAR1Q8WVX9 515 aa14.09□□□□□ -0.15
HDAC6-220ENST00000477528 HTRA1Q92743 480 aa14.09□□□□□ -0.15
HDAC6-220ENST00000477528 IL4I1Q96RQ9 567 aa14.09□□□□□ -0.15
HDAC6-220ENST00000477528 IL1RAPQ9NPH3 570 aa14.09□□□□□ -0.15
HDAC6-220ENST00000477528 FAM92AA1XBS5 289 aa14.09□□□□□ -0.15
HDAC6-220ENST00000477528 TARM1B6A8C7 271 aa14.09□□□□□ -0.15
HDAC6-220ENST00000477528 H7BY64 318 aa14.09□□□□□ -0.15
HDAC6-220ENST00000477528 PSMD11O00231 422 aa14.09□□□□□ -0.15
HDAC6-220ENST00000477528 SNPHO15079 494 aa14.09□□□□□ -0.15
HDAC6-220ENST00000477528 ADH1BP00325 375 aa14.09□□□□□ -0.15
HDAC6-220ENST00000477528 OR1E2P47887 323 aa14.09□□□□□ -0.15
HDAC6-220ENST00000477528 NRIP1P48552 1158 aa14.09□□□□□ -0.15
HDAC6-220ENST00000477528 ENTPD1P49961 510 aa14.09□□□□□ -0.15
HDAC6-220ENST00000477528 TRIM71Q2Q1W2 868 aaKnown RBP14.09□□□□□ -0.15
HDAC6-220ENST00000477528 CES4AQ5XG92 561 aa14.09□□□□□ -0.15
HDAC6-220ENST00000477528 HSD11B1LQ7Z5J1 315 aa14.09□□□□□ -0.15
HDAC6-220ENST00000477528 PRAP1Q96NZ9 151 aa14.09□□□□□ -0.15
HDAC6-220ENST00000477528 SLC22A12Q96S37 553 aa14.09□□□□□ -0.15
HDAC6-220ENST00000477528 YIPF4Q9BSR8 244 aa14.09□□□□□ -0.15
HDAC6-220ENST00000477528 TRMT61BQ9BVS5 477 aaKnown RBP14.09□□□□□ -0.15
HDAC6-220ENST00000477528 CLMPQ9H6B4 373 aa14.09□□□□□ -0.15
HDAC6-220ENST00000477528 BRF2Q9HAW0 419 aa14.09□□□□□ -0.15
HDAC6-220ENST00000477528 CTPS2Q9NRF8 586 aa14.09□□□□□ -0.15
HDAC6-220ENST00000477528 DCAF13Q9NV06 445 aaKnown RBP14.09□□□□□ -0.15
HDAC6-220ENST00000477528 SLAMF8Q9P0V8 285 aa14.09□□□□□ -0.15
HDAC6-220ENST00000477528 CD300AQ9UGN4 299 aa14.09□□□□□ -0.15
HDAC6-220ENST00000477528 SAGP10523 405 aaPredicted RBP14.08□□□□□ -0.15
HDAC6-220ENST00000477528 GSTM3P21266 225 aa14.08□□□□□ -0.15
HDAC6-220ENST00000477528 MYL9P24844 172 aa14.08□□□□□ -0.15
HDAC6-220ENST00000477528 TUBA1BP68363 451 aa14.08□□□□□ -0.15
HDAC6-220ENST00000477528 LGALS3BPQ08380 585 aa14.08□□□□□ -0.15
HDAC6-220ENST00000477528 TMEM44Q2T9K0 475 aa14.08□□□□□ -0.15
HDAC6-220ENST00000477528 ZNF311Q5JNZ3 666 aa14.08□□□□□ -0.15
HDAC6-220ENST00000477528 FAM131AQ6UXB0 335 aa14.08□□□□□ -0.15
HDAC6-220ENST00000477528 TUBA1AQ71U36 451 aa14.08□□□□□ -0.15
HDAC6-220ENST00000477528 VN1R5Q7Z5H4 357 aa14.08□□□□□ -0.15
HDAC6-220ENST00000477528 CHERPQ8IWX8 916 aaKnown RBP14.08□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms