RNA–Protein interactions for RNA: ENST00000477421.2

COL27A1-204, Transcript of collagen type XXVII alpha 1 chain, humanhuman

TSL 2

Gene COL27A1, Length 3,991 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL27A1-204ENST00000477421 ID2Q02363 134 aa10.63□□□□□ -0.71
COL27A1-204ENST00000477421 TMEM236Q5W0B7 351 aa10.63□□□□□ -0.71
COL27A1-204ENST00000477421 ZNF57Q68EA5 555 aaPredicted RBP10.63□□□□□ -0.71
COL27A1-204ENST00000477421 DUS1LQ6P1R4 473 aaKnown RBP10.63□□□□□ -0.71
COL27A1-204ENST00000477421 TEFMQ96QE5 360 aaKnown RBP10.63□□□□□ -0.71
COL27A1-204ENST00000477421 CNPPD1Q9BV87 410 aa10.63□□□□□ -0.71
COL27A1-204ENST00000477421 HDHD2Q9H0R4 259 aa10.63□□□□□ -0.71
COL27A1-204ENST00000477421 FZD3Q9NPG1 666 aa10.63□□□□□ -0.71
COL27A1-204ENST00000477421 FAM186AA6NE01 2351 aa10.62□□□□□ -0.71
COL27A1-204ENST00000477421 LOC110117498-PIK3R3F6TDL0 507 aa10.62□□□□□ -0.71
COL27A1-204ENST00000477421 AP2A2O94973 939 aa10.62□□□□□ -0.71
COL27A1-204ENST00000477421 C9P02748 559 aa10.62□□□□□ -0.71
COL27A1-204ENST00000477421 F11P03951 625 aa10.62□□□□□ -0.71
COL27A1-204ENST00000477421 NUDT7P0C024 238 aa10.62□□□□□ -0.71
COL27A1-204ENST00000477421 MTAPQ13126 283 aa10.62□□□□□ -0.71
COL27A1-204ENST00000477421 TRIM71Q2Q1W2 868 aaKnown RBP10.62□□□□□ -0.71
COL27A1-204ENST00000477421 UGT3A2Q3SY77 523 aa10.62□□□□□ -0.71
COL27A1-204ENST00000477421 CCDC157Q569K6 752 aa10.62□□□□□ -0.71
COL27A1-204ENST00000477421 COLEC12Q5KU26 742 aa10.62□□□□□ -0.71
COL27A1-204ENST00000477421 RBM48Q5RL73 367 aaKnown RBP10.62□□□□□ -0.71
COL27A1-204ENST00000477421 FOXB2Q5VYV0 432 aa10.62□□□□□ -0.71
COL27A1-204ENST00000477421 HMBOX1Q6NT76 420 aa10.62□□□□□ -0.71
COL27A1-204ENST00000477421 TRAF7Q6Q0C0 670 aa10.62□□□□□ -0.71
COL27A1-204ENST00000477421 ENPP7Q6UWV6 458 aa10.62□□□□□ -0.71
COL27A1-204ENST00000477421 PRR23BQ6ZRT6 265 aa10.62□□□□□ -0.71
COL27A1-204ENST00000477421 PLEKHM3Q6ZWE6 761 aa10.62□□□□□ -0.71
COL27A1-204ENST00000477421 RNF44Q7L0R7 432 aa10.62□□□□□ -0.71
COL27A1-204ENST00000477421 C19orf18Q8NEA5 215 aa10.62□□□□□ -0.71
COL27A1-204ENST00000477421 SPATA5L1Q9BVQ7 753 aa10.62□□□□□ -0.71
COL27A1-204ENST00000477421 C3orf14Q9HBI5 128 aa10.62□□□□□ -0.71
COL27A1-204ENST00000477421 KNTC1P50748 2209 aa10.62□□□□□ -0.71
COL27A1-204ENST00000477421 RB1P06400 928 aa10.62□□□□□ -0.71
COL27A1-204ENST00000477421 BMP7P18075 431 aa10.62□□□□□ -0.71
COL27A1-204ENST00000477421 NT5EP21589 574 aa10.62□□□□□ -0.71
COL27A1-204ENST00000477421 LHCGRP22888 699 aa10.62□□□□□ -0.71
COL27A1-204ENST00000477421 PTX3P26022 381 aaPredicted RBP10.62□□□□□ -0.71
COL27A1-204ENST00000477421 IFNGR2P38484 337 aa10.62□□□□□ -0.71
COL27A1-204ENST00000477421 CCR8P51685 355 aa10.62□□□□□ -0.71
COL27A1-204ENST00000477421 ERVFC1P60507 584 aa10.62□□□□□ -0.71
COL27A1-204ENST00000477421 RGS1Q08116 209 aa10.62□□□□□ -0.71
COL27A1-204ENST00000477421 IHHQ14623 411 aa10.62□□□□□ -0.71
COL27A1-204ENST00000477421 PUS10Q3MIT2 529 aaKnown RBP10.62□□□□□ -0.71
COL27A1-204ENST00000477421 CCSMST1Q4G0I0 132 aa10.62□□□□□ -0.71
COL27A1-204ENST00000477421 COQ5Q5HYK3 327 aa10.62□□□□□ -0.71
COL27A1-204ENST00000477421 AFMIDQ63HM1 303 aa10.62□□□□□ -0.71
COL27A1-204ENST00000477421 PIWIL3Q7Z3Z3 882 aaKnown RBP10.62□□□□□ -0.71
COL27A1-204ENST00000477421 COMMD6Q7Z4G1 85 aa10.62□□□□□ -0.71
COL27A1-204ENST00000477421 ZSCAN2Q7Z7L9 614 aaPredicted RBP10.62□□□□□ -0.71
COL27A1-204ENST00000477421 CHERPQ8IWX8 916 aaKnown RBP10.62□□□□□ -0.71
COL27A1-204ENST00000477421 DNAJB8Q8NHS0 232 aa10.62□□□□□ -0.71
COL27A1-204ENST00000477421 HERVK_113Q902F9 699 aa10.62□□□□□ -0.71
COL27A1-204ENST00000477421 RERGQ96A58 199 aaPredicted RBP10.62□□□□□ -0.71
COL27A1-204ENST00000477421 Q96MT0 163 aa10.62□□□□□ -0.71
COL27A1-204ENST00000477421 ZNF583Q96ND8 569 aa10.62□□□□□ -0.71
COL27A1-204ENST00000477421 TRIB3Q96RU7 358 aa10.62□□□□□ -0.71
COL27A1-204ENST00000477421 REEP4Q9H6H4 257 aa10.62□□□□□ -0.71
COL27A1-204ENST00000477421 PALMDQ9NP74 551 aa10.62□□□□□ -0.71
COL27A1-204ENST00000477421 MRPS30Q9NP92 439 aaKnown RBP10.62□□□□□ -0.71
COL27A1-204ENST00000477421 DNAJC27Q9NZQ0 273 aa10.62□□□□□ -0.71
COL27A1-204ENST00000477421 OR10H1Q9Y4A9 318 aa10.62□□□□□ -0.71
COL27A1-204ENST00000477421 ZNF860A6NHJ4 632 aa10.62□□□□□ -0.71
COL27A1-204ENST00000477421 LRRC72A6NJI9 287 aa10.62□□□□□ -0.71
COL27A1-204ENST00000477421 MT-ND2P03891 347 aa10.62□□□□□ -0.71
COL27A1-204ENST00000477421 C1GALT1C1LP0DN25 315 aa10.62□□□□□ -0.71
COL27A1-204ENST00000477421 MYF6P23409 242 aa10.62□□□□□ -0.71
COL27A1-204ENST00000477421 FSHRP23945 695 aa10.62□□□□□ -0.71
COL27A1-204ENST00000477421 PCSK6P29122 969 aa10.62□□□□□ -0.71
COL27A1-204ENST00000477421 TIA1P31483 386 aaKnown RBP eCLIP10.62□□□□□ -0.711e-6■□□□□ 8.2
COL27A1-204ENST00000477421 SLC9A5Q14940 896 aa10.62□□□□□ -0.71
COL27A1-204ENST00000477421 KIAA1614Q5VZ46 1190 aa10.62□□□□□ -0.71
COL27A1-204ENST00000477421 LIPJQ5W064 366 aa10.62□□□□□ -0.71
COL27A1-204ENST00000477421 CCDC116Q8IYX3 515 aa10.62□□□□□ -0.71
COL27A1-204ENST00000477421 GHDCQ8N2G8 530 aa10.62□□□□□ -0.71
COL27A1-204ENST00000477421 C7orf57Q8NEG2 295 aa10.62□□□□□ -0.71
COL27A1-204ENST00000477421 SLC35G5Q96KT7 338 aa10.62□□□□□ -0.71
COL27A1-204ENST00000477421 PDFQ9HBH1 243 aa10.62□□□□□ -0.71
COL27A1-204ENST00000477421 OLAHQ9NV23 265 aa10.62□□□□□ -0.71
COL27A1-204ENST00000477421 SOHLH2Q9NX45 425 aa10.62□□□□□ -0.71
COL27A1-204ENST00000477421 PCDHA9Q9Y5H5 950 aa10.62□□□□□ -0.71
COL27A1-204ENST00000477421 CPSF4LA6NMK7 179 aaKnown RBP10.61□□□□□ -0.71
COL27A1-204ENST00000477421 ASNA1O43681 348 aa10.61□□□□□ -0.71
COL27A1-204ENST00000477421 BMP10O95393 424 aa10.61□□□□□ -0.71
COL27A1-204ENST00000477421 SAGP10523 405 aaPredicted RBP10.61□□□□□ -0.71
COL27A1-204ENST00000477421 ANXA8P13928 327 aa10.61□□□□□ -0.71
COL27A1-204ENST00000477421 CDKN2CP42773 168 aa10.61□□□□□ -0.71
COL27A1-204ENST00000477421 CCT3P49368 545 aaKnown RBP10.61□□□□□ -0.71
COL27A1-204ENST00000477421 SMIM11AP58511 58 aa10.61□□□□□ -0.71
COL27A1-204ENST00000477421 DNASE1L3Q13609 305 aa10.61□□□□□ -0.71
COL27A1-204ENST00000477421 MRPL58Q14197 206 aaKnown RBP10.61□□□□□ -0.71
COL27A1-204ENST00000477421 CRB2Q5IJ48 1285 aa10.61□□□□□ -0.71
COL27A1-204ENST00000477421 IQCHQ86VS3 1027 aa10.61□□□□□ -0.71
COL27A1-204ENST00000477421 NUDT13Q86X67 352 aa10.61□□□□□ -0.71
COL27A1-204ENST00000477421 TRAM1L1Q8N609 369 aa10.61□□□□□ -0.71
COL27A1-204ENST00000477421 PDPRQ8NCN5 879 aa10.61□□□□□ -0.71
COL27A1-204ENST00000477421 ZNF740Q8NDX6 193 aa10.61□□□□□ -0.71
COL27A1-204ENST00000477421 OR5AR1Q8NGP9 310 aa10.61□□□□□ -0.71
COL27A1-204ENST00000477421 CIDECQ96AQ7 238 aaPredicted RBP10.61□□□□□ -0.71
COL27A1-204ENST00000477421 COX4I2Q96KJ9 171 aa10.61□□□□□ -0.71
COL27A1-204ENST00000477421 SLC38A2Q96QD8 506 aa10.61□□□□□ -0.71
COL27A1-204ENST00000477421 GPATCH1Q9BRR8 931 aaKnown RBP10.61□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 191.3 ms