RNA–Protein interactions for RNA: ENST00000473373.1

CPNE1-222, Transcript of copine 1, human

TSL 2

Gene CPNE1, Length 821 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPNE1-222	ENST00000473373	AGTR2	P50052	363 aa		10.9	□□□□□ -0.66
CPNE1-222	ENST00000473373	SERPINB8	P50452	374 aa		10.9	□□□□□ -0.66
CPNE1-222	ENST00000473373	OLR1	P78380	273 aa		10.9	□□□□□ -0.66
CPNE1-222	ENST00000473373	CBLB	Q13191	982 aa		10.9	□□□□□ -0.66
CPNE1-222	ENST00000473373	ELOA	Q14241	798 aa	Known RBP	10.9	□□□□□ -0.66
CPNE1-222	ENST00000473373	OR4D1	Q15615	310 aa		10.9	□□□□□ -0.66
CPNE1-222	ENST00000473373	PDK4	Q16654	411 aa		10.9	□□□□□ -0.66
CPNE1-222	ENST00000473373	FAM83E	Q2M2I3	478 aa		10.9	□□□□□ -0.66
CPNE1-222	ENST00000473373	BTBD16	Q32M84	506 aa		10.9	□□□□□ -0.66
CPNE1-222	ENST00000473373	C4orf17	Q53FE4	359 aa		10.9	□□□□□ -0.66
CPNE1-222	ENST00000473373	PAGE2B	Q5JRK9	111 aa		10.9	□□□□□ -0.66
CPNE1-222	ENST00000473373	ISLR2	Q6UXK2	745 aa		10.9	□□□□□ -0.66
CPNE1-222	ENST00000473373	TMIGD1	Q6UXZ0	262 aa		10.9	□□□□□ -0.66
CPNE1-222	ENST00000473373	CYP4X1	Q8N118	509 aa		10.9	□□□□□ -0.66
CPNE1-222	ENST00000473373	SIRT6	Q8N6T7	355 aa		10.9	□□□□□ -0.66
CPNE1-222	ENST00000473373	RBMXL3	Q8N7X1	1067 aa	Known RBP	10.9	□□□□□ -0.66
CPNE1-222	ENST00000473373	NOA1	Q8NC60	698 aa	Known RBP	10.9	□□□□□ -0.66
CPNE1-222	ENST00000473373	UHMK1	Q8TAS1	419 aa	Known RBP	10.9	□□□□□ -0.66
CPNE1-222	ENST00000473373	DNAJB14	Q8TBM8	379 aa		10.9	□□□□□ -0.66
CPNE1-222	ENST00000473373	KIAA1191	Q96A73	305 aa		10.9	□□□□□ -0.66
CPNE1-222	ENST00000473373	TM4SF19	Q96DZ7	209 aa		10.9	□□□□□ -0.66
CPNE1-222	ENST00000473373	MOCOS	Q96EN8	888 aa		10.9	□□□□□ -0.66
CPNE1-222	ENST00000473373	SCYL1	Q96KG9	808 aa		10.9	□□□□□ -0.66
CPNE1-222	ENST00000473373	TGIF2	Q9GZN2	237 aa		10.9	□□□□□ -0.66
CPNE1-222	ENST00000473373	SPNS1	Q9H2V7	528 aa		10.9	□□□□□ -0.66
CPNE1-222	ENST00000473373	CDC42EP4	Q9H3Q1	356 aa	Known RBP	10.9	□□□□□ -0.66
CPNE1-222	ENST00000473373	MLXIPL	Q9NP71	852 aa		10.9	□□□□□ -0.66
CPNE1-222	ENST00000473373	NINJ2	Q9NZG7	142 aa		10.9	□□□□□ -0.66
CPNE1-222	ENST00000473373	GPRC5B	Q9NZH0	403 aa		10.9	□□□□□ -0.66
CPNE1-222	ENST00000473373	NUDT4	Q9NZJ9	180 aa		10.9	□□□□□ -0.66
CPNE1-222	ENST00000473373	OPTC	Q9UBM4	332 aa		10.9	□□□□□ -0.66
CPNE1-222	ENST00000473373	SLC22A7	Q9Y694	548 aa		10.9	□□□□□ -0.66
CPNE1-222	ENST00000473373	UTP20	O75691	2785 aa	Known RBP	10.9	□□□□□ -0.66
CPNE1-222	ENST00000473373	SVIL	O95425	2214 aa		10.89	□□□□□ -0.67
CPNE1-222	ENST00000473373	IGHV1-45	A0A0A0MS14	117 aa		10.89	□□□□□ -0.67
CPNE1-222	ENST00000473373	UBXN8	O00124	270 aa		10.89	□□□□□ -0.67
CPNE1-222	ENST00000473373	B4GALT2	O60909	372 aa		10.89	□□□□□ -0.67
CPNE1-222	ENST00000473373	SEC24D	O94855	1032 aa	Predicted RBP	10.89	□□□□□ -0.67
CPNE1-222	ENST00000473373	RHOXF2B	P0C7M4	288 aa		10.89	□□□□□ -0.67
CPNE1-222	ENST00000473373	PCNA	P12004	261 aa		10.89	□□□□□ -0.67
CPNE1-222	ENST00000473373	COX6A1	P12074	109 aa		10.89	□□□□□ -0.67
CPNE1-222	ENST00000473373	MSH2	P43246	934 aa		10.89	□□□□□ -0.67
CPNE1-222	ENST00000473373	IRF8	Q02556	426 aa		10.89	□□□□□ -0.67
CPNE1-222	ENST00000473373	TGM3	Q08188	693 aa		10.89	□□□□□ -0.67
CPNE1-222	ENST00000473373	ABRAXAS2	Q15018	415 aa		10.89	□□□□□ -0.67
CPNE1-222	ENST00000473373	INPP5J	Q15735	1006 aa	Predicted RBP	10.89	□□□□□ -0.67
CPNE1-222	ENST00000473373	NSDHL	Q15738	373 aa		10.89	□□□□□ -0.67
CPNE1-222	ENST00000473373	ZKSCAN8	Q15776	578 aa	Predicted RBP	10.89	□□□□□ -0.67
CPNE1-222	ENST00000473373	ZXDC	Q2QGD7	858 aa	Predicted RBP	10.89	□□□□□ -0.67
CPNE1-222	ENST00000473373	ATG9B	Q674R7	924 aa		10.89	□□□□□ -0.67
CPNE1-222	ENST00000473373	TRIM40	Q6P9F5	258 aa		10.89	□□□□□ -0.67
CPNE1-222	ENST00000473373	LANCL3	Q6ZV70	420 aa		10.89	□□□□□ -0.67
CPNE1-222	ENST00000473373	CPEB2	Q7Z5Q1	589 aa	Known RBP	10.89	□□□□□ -0.67
CPNE1-222	ENST00000473373	CCDC91	Q7Z6B0	441 aa		10.89	□□□□□ -0.67
CPNE1-222	ENST00000473373	IFT20	Q8IY31	132 aa		10.89	□□□□□ -0.67
CPNE1-222	ENST00000473373	SUPV3L1	Q8IYB8	786 aa	Known RBP eCLIP	10.89	□□□□□ -0.67
CPNE1-222	ENST00000473373	ARMC2	Q8NEN0	867 aa		10.89	□□□□□ -0.67
CPNE1-222	ENST00000473373	OR4K1	Q8NGD4	311 aa		10.89	□□□□□ -0.67
CPNE1-222	ENST00000473373	SUN3	Q8TAQ9	357 aa		10.89	□□□□□ -0.67
CPNE1-222	ENST00000473373	NT5C	Q8TCD5	201 aa		10.89	□□□□□ -0.67
CPNE1-222	ENST00000473373	BRIX1	Q8TDN6	353 aa	Known RBP	10.89	□□□□□ -0.67
CPNE1-222	ENST00000473373	KCTD4	Q8WVF5	259 aa		10.89	□□□□□ -0.67
CPNE1-222	ENST00000473373	NXNL1	Q96CM4	212 aa		10.89	□□□□□ -0.67
CPNE1-222	ENST00000473373	WDR77	Q9BQA1	342 aa	Predicted RBP	10.89	□□□□□ -0.67
CPNE1-222	ENST00000473373	RHOXF2	Q9BQY4	288 aa		10.89	□□□□□ -0.67
CPNE1-222	ENST00000473373	TUBB6	Q9BUF5	446 aa		10.89	□□□□□ -0.67
CPNE1-222	ENST00000473373	VN1R1	Q9GZP7	353 aa		10.89	□□□□□ -0.67
CPNE1-222	ENST00000473373	CSTF2T	Q9H0L4	616 aa	Known RBP eCLIP	10.89	□□□□□ -0.67
CPNE1-222	ENST00000473373	SNX15	Q9NRS6	342 aa		10.89	□□□□□ -0.67
CPNE1-222	ENST00000473373	ZDHHC18	Q9NUE0	388 aa		10.89	□□□□□ -0.67
CPNE1-222	ENST00000473373	ABI3	Q9P2A4	366 aa		10.89	□□□□□ -0.67
CPNE1-222	ENST00000473373	CPSF2	Q9P2I0	782 aa	Known RBP	10.89	□□□□□ -0.67
CPNE1-222	ENST00000473373	DMGDH	Q9UI17	866 aa	Known RBP	10.89	□□□□□ -0.67
CPNE1-222	ENST00000473373	TEKT2	Q9UIF3	430 aa		10.89	□□□□□ -0.67
CPNE1-222	ENST00000473373	TEX15	Q9BXT5	2789 aa		10.89	□□□□□ -0.67
CPNE1-222	ENST00000473373	NBAS	A2RRP1	2371 aa		10.89	□□□□□ -0.67
CPNE1-222	ENST00000473373	SHANK1	Q9Y566	2161 aa		10.89	□□□□□ -0.67
CPNE1-222	ENST00000473373	DOPEY2	Q9Y3R5	2298 aa		10.88	□□□□□ -0.67
CPNE1-222	ENST00000473373	BSN	Q9UPA5	3926 aa		10.88	□□□□□ -0.67
CPNE1-222	ENST00000473373		A0A087WUV0	522 aa	Predicted RBP	10.88	□□□□□ -0.67
CPNE1-222	ENST00000473373		A0A096LPK6	155 aa		10.88	□□□□□ -0.67
CPNE1-222	ENST00000473373	IGHV3-20	A0A0C4DH32	117 aa		10.88	□□□□□ -0.67
CPNE1-222	ENST00000473373		A0A0G2JN53	185 aa		10.88	□□□□□ -0.67
CPNE1-222	ENST00000473373	BLACE	A4D250	179 aa		10.88	□□□□□ -0.67
CPNE1-222	ENST00000473373		A8MUI8	341 aa		10.88	□□□□□ -0.67
CPNE1-222	ENST00000473373	ERI3	O43414	337 aa	Known RBP	10.88	□□□□□ -0.67
CPNE1-222	ENST00000473373	CHST10	O43529	356 aa		10.88	□□□□□ -0.67
CPNE1-222	ENST00000473373	GALR3	O60755	368 aa	Predicted RBP	10.88	□□□□□ -0.67
CPNE1-222	ENST00000473373	KERA	O60938	352 aa		10.88	□□□□□ -0.67
CPNE1-222	ENST00000473373	KRT38	O76015	456 aa		10.88	□□□□□ -0.67
CPNE1-222	ENST00000473373	B3GALT4	O96024	378 aa		10.88	□□□□□ -0.67
CPNE1-222	ENST00000473373	FH	P07954	510 aa		10.88	□□□□□ -0.67
CPNE1-222	ENST00000473373	SERPINA6	P08185	405 aa		10.88	□□□□□ -0.67
CPNE1-222	ENST00000473373	PRR35	P0CG20	571 aa		10.88	□□□□□ -0.67
CPNE1-222	ENST00000473373	SLC35E2B	P0CK96	405 aa		10.88	□□□□□ -0.67
CPNE1-222	ENST00000473373	MYBL2	P10244	700 aa		10.88	□□□□□ -0.67
CPNE1-222	ENST00000473373	RNH1	P13489	461 aa	Known RBP	10.88	□□□□□ -0.67
CPNE1-222	ENST00000473373	IL10	P22301	178 aa		10.88	□□□□□ -0.67
CPNE1-222	ENST00000473373	GMPR	P36959	345 aa		10.88	□□□□□ -0.67
CPNE1-222	ENST00000473373	SERPINB9	P50453	376 aa		10.88	□□□□□ -0.67

Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms