RNA–Protein interactions for RNA: ENST00000455596.5

HMGB3-205, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene HMGB3, Length 793 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-205ENST00000455596 KIAA1191Q96A73 305 aa20.02■□□□□ 0.8
HMGB3-205ENST00000455596 RBCK1Q9BYM8 510 aa20.02■□□□□ 0.8
HMGB3-205ENST00000455596 ZDHHC18Q9NUE0 388 aa20.02■□□□□ 0.8
HMGB3-205ENST00000455596 CD274Q9NZQ7 290 aa20.02■□□□□ 0.8
HMGB3-205ENST00000455596 RNF112Q9ULX5 631 aa20.02■□□□□ 0.8
HMGB3-205ENST00000455596 SPENQ96T58 3664 aaKnown RBP20.01■□□□□ 0.79
HMGB3-205ENST00000455596 IGHV3-20A0A0C4DH32 117 aa20.01■□□□□ 0.79
HMGB3-205ENST00000455596 DYTNA2CJ06 578 aa20.01■□□□□ 0.79
HMGB3-205ENST00000455596 CTAGE15A4D2H0 777 aa20.01■□□□□ 0.79
HMGB3-205ENST00000455596 OR2W5A6NFC9 320 aa20.01■□□□□ 0.79
HMGB3-205ENST00000455596 CLGNO14967 610 aa20.01■□□□□ 0.79
HMGB3-205ENST00000455596 CHST10O43529 356 aa20.01■□□□□ 0.79
HMGB3-205ENST00000455596 CDC123O75794 336 aaPredicted RBP20.01■□□□□ 0.79
HMGB3-205ENST00000455596 SEC24DO94855 1032 aaPredicted RBP20.01■□□□□ 0.79
HMGB3-205ENST00000455596 B3GALT4O96024 378 aa20.01■□□□□ 0.79
HMGB3-205ENST00000455596 S100BP04271 92 aaPredicted RBP20.01■□□□□ 0.79
HMGB3-205ENST00000455596 SERPINA6P08185 405 aa20.01■□□□□ 0.79
HMGB3-205ENST00000455596 ITGAMP11215 1152 aa20.01■□□□□ 0.79
HMGB3-205ENST00000455596 HNF4AP41235 474 aa20.01■□□□□ 0.79
HMGB3-205ENST00000455596 ARG2P78540 354 aa20.01■□□□□ 0.79
HMGB3-205ENST00000455596 HYAL2Q12891 473 aa20.01■□□□□ 0.79
HMGB3-205ENST00000455596 EFTUD2Q15029 972 aaKnown RBP eCLIP20.01■□□□□ 0.791e-8■■■■■ 59.6
HMGB3-205ENST00000455596 FHL5Q5TD97 284 aa20.01■□□□□ 0.79
HMGB3-205ENST00000455596 B3GNTL1Q67FW5 361 aaPredicted RBP20.01■□□□□ 0.79
HMGB3-205ENST00000455596 ANKRD37Q7Z713 158 aa20.01■□□□□ 0.79
HMGB3-205ENST00000455596 CMC1Q7Z7K0 106 aa20.01■□□□□ 0.79
HMGB3-205ENST00000455596 TBC1D1Q86TI0 1168 aaPredicted RBP20.01■□□□□ 0.79
HMGB3-205ENST00000455596 CTAGE6Q86UF2 777 aa20.01■□□□□ 0.79
HMGB3-205ENST00000455596 KRT78Q8N1N4 520 aa20.01■□□□□ 0.79
HMGB3-205ENST00000455596 PDPRQ8NCN5 879 aa20.01■□□□□ 0.79
HMGB3-205ENST00000455596 PLPP5Q8NEB5 264 aa20.01■□□□□ 0.79
HMGB3-205ENST00000455596 TTLQ8NG68 377 aa20.01■□□□□ 0.79
HMGB3-205ENST00000455596 TBC1D20Q96BZ9 403 aa20.01■□□□□ 0.79
HMGB3-205ENST00000455596 DNAJC11Q9NVH1 559 aa20.01■□□□□ 0.79
HMGB3-205ENST00000455596 DOPEY2Q9Y3R5 2298 aa20■□□□□ 0.79
HMGB3-205ENST00000455596 STK16O75716 305 aa20■□□□□ 0.79
HMGB3-205ENST00000455596 FHP07954 510 aa20■□□□□ 0.79
HMGB3-205ENST00000455596 SLC35E2BP0CK96 405 aa20■□□□□ 0.79
HMGB3-205ENST00000455596 JAK1P23458 1154 aa20■□□□□ 0.79
HMGB3-205ENST00000455596 GSTM2P28161 218 aa20■□□□□ 0.79
HMGB3-205ENST00000455596 CRABP2P29373 138 aa20■□□□□ 0.79
HMGB3-205ENST00000455596 TSFMP43897 325 aaKnown RBP20■□□□□ 0.79
HMGB3-205ENST00000455596 HSPA7P48741 367 aa20■□□□□ 0.79
HMGB3-205ENST00000455596 RAB8AP61006 207 aa20■□□□□ 0.79
HMGB3-205ENST00000455596 OLR1P78380 273 aa20■□□□□ 0.79
HMGB3-205ENST00000455596 RHAGQ02094 409 aa20■□□□□ 0.79
HMGB3-205ENST00000455596 MRPL49Q13405 166 aaKnown RBP20■□□□□ 0.79
HMGB3-205ENST00000455596 SLBPQ14493 270 aaKnown RBP eCLIP20■□□□□ 0.79
HMGB3-205ENST00000455596 BTBD16Q32M84 506 aa20■□□□□ 0.79
HMGB3-205ENST00000455596 TOR1AIP1Q5JTV8 583 aa20■□□□□ 0.79
HMGB3-205ENST00000455596 TMIGD1Q6UXZ0 262 aa20■□□□□ 0.79
HMGB3-205ENST00000455596 CEP128Q6ZU80 1094 aa20■□□□□ 0.79
HMGB3-205ENST00000455596 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP20■□□□□ 0.79
HMGB3-205ENST00000455596 MMGT1Q8N4V1 131 aa20■□□□□ 0.79
HMGB3-205ENST00000455596 STAG3L4Q8TBR4 150 aa20■□□□□ 0.79
HMGB3-205ENST00000455596 CREB3L4Q8TEY5 395 aa20■□□□□ 0.79
HMGB3-205ENST00000455596 EXT2Q93063 718 aa20■□□□□ 0.79
HMGB3-205ENST00000455596 PITHD1Q9GZP4 211 aaPredicted RBP20■□□□□ 0.79
HMGB3-205ENST00000455596 KLHL31Q9H511 634 aa20■□□□□ 0.79
HMGB3-205ENST00000455596 CLK4Q9HAZ1 481 aaKnown RBP20■□□□□ 0.79
HMGB3-205ENST00000455596 NMRAL1Q9HBL8 299 aa20■□□□□ 0.79
HMGB3-205ENST00000455596 AGPAT4Q9NRZ5 378 aa20■□□□□ 0.79
HMGB3-205ENST00000455596 LANCL2Q9NS86 450 aa20■□□□□ 0.79
HMGB3-205ENST00000455596 MTRF1LQ9UGC7 380 aaKnown RBP20■□□□□ 0.79
HMGB3-205ENST00000455596 CNTRLQ7Z7A1 2325 aa19.99■□□□□ 0.79
HMGB3-205ENST00000455596 MAGEB17A8MXT2 336 aa19.99■□□□□ 0.79
HMGB3-205ENST00000455596 LTA4HP09960 611 aaKnown RBP19.99■□□□□ 0.79
HMGB3-205ENST00000455596 SMIM10L1P0DMW3 83 aa19.99■□□□□ 0.79
HMGB3-205ENST00000455596 PHBP35232 272 aa19.99■□□□□ 0.79
HMGB3-205ENST00000455596 STXBP1P61764 594 aaKnown RBP19.99■□□□□ 0.79
HMGB3-205ENST00000455596 ABRAXAS2Q15018 415 aa19.99■□□□□ 0.79
HMGB3-205ENST00000455596 NR6A1Q15406 480 aa19.99■□□□□ 0.79
HMGB3-205ENST00000455596 NSDHLQ15738 373 aa19.99■□□□□ 0.79
HMGB3-205ENST00000455596 FBXO48Q5FWF7 155 aa19.99■□□□□ 0.79
HMGB3-205ENST00000455596 PLAG1Q6DJT9 500 aa19.99■□□□□ 0.79
HMGB3-205ENST00000455596 SNX31Q8N9S9 440 aa19.99■□□□□ 0.79
HMGB3-205ENST00000455596 CATSPER1Q8NEC5 780 aa19.99■□□□□ 0.79
HMGB3-205ENST00000455596 HAS2Q92819 552 aa19.99■□□□□ 0.79
HMGB3-205ENST00000455596 ESAMQ96AP7 390 aa19.99■□□□□ 0.79
HMGB3-205ENST00000455596 SMIM10Q96HG1 83 aa19.99■□□□□ 0.79
HMGB3-205ENST00000455596 EHD1Q9H4M9 534 aa19.99■□□□□ 0.79
HMGB3-205ENST00000455596 NT5DC2Q9H857 520 aa19.99■□□□□ 0.79
HMGB3-205ENST00000455596 COPG2Q9UBF2 871 aa19.99■□□□□ 0.79
HMGB3-205ENST00000455596 PTBP2Q9UKA9 531 aaKnown RBP19.99■□□□□ 0.79
HMGB3-205ENST00000455596 NTNG1Q9Y2I2 539 aa19.99■□□□□ 0.79
HMGB3-205ENST00000455596 ASH1LQ9NR48 2969 aaKnown RBP19.99■□□□□ 0.79
HMGB3-205ENST00000455596 DNAJB6O75190 326 aa19.98■□□□□ 0.79
HMGB3-205ENST00000455596 TFEBP19484 476 aa19.98■□□□□ 0.79
HMGB3-205ENST00000455596 GMPRP36959 345 aa19.98■□□□□ 0.79
HMGB3-205ENST00000455596 ACTN3Q08043 901 aaPredicted RBP19.98■□□□□ 0.79
HMGB3-205ENST00000455596 DLG1Q12959 904 aa19.98■□□□□ 0.79
HMGB3-205ENST00000455596 EXT1Q16394 746 aa19.98■□□□□ 0.79
HMGB3-205ENST00000455596 PDK4Q16654 411 aa19.98■□□□□ 0.79
HMGB3-205ENST00000455596 SFT2D3Q587I9 215 aa19.98■□□□□ 0.79
HMGB3-205ENST00000455596 ABHD17BQ5VST6 288 aa19.98■□□□□ 0.79
HMGB3-205ENST00000455596 ISCA2Q86U28 154 aa19.98■□□□□ 0.79
HMGB3-205ENST00000455596 MNS1Q8NEH6 495 aa19.98■□□□□ 0.79
HMGB3-205ENST00000455596 OR1N1Q8NGS0 311 aa19.98■□□□□ 0.79
HMGB3-205ENST00000455596 CCT6BQ92526 530 aa19.98■□□□□ 0.79
HMGB3-205ENST00000455596 GAL3ST3Q96A11 431 aa19.98■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 84.3 ms