RNA–Protein interactions for RNA: ENST00000451053.2

VPS33A-202, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3 BASIC

Gene VPS33A, Length 1,154 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-202ENST00000451053 TMEM214Q6NUQ4 689 aaKnown RBP12.4□□□□□ -0.42
VPS33A-202ENST00000451053 TTLL10Q6ZVT0 673 aa12.4□□□□□ -0.42
VPS33A-202ENST00000451053 SPATA21Q7Z572 469 aa12.4□□□□□ -0.42
VPS33A-202ENST00000451053 CLYBLQ8N0X4 340 aa12.4□□□□□ -0.42
VPS33A-202ENST00000451053 TTLQ8NG68 377 aa12.4□□□□□ -0.42
VPS33A-202ENST00000451053 HUS1BQ8NHY5 278 aa12.4□□□□□ -0.42
VPS33A-202ENST00000451053 WDR20Q8TBZ3 569 aa12.4□□□□□ -0.42
VPS33A-202ENST00000451053 ZNF473Q8WTR7 871 aaKnown RBP12.4□□□□□ -0.42
VPS33A-202ENST00000451053 CLIP3Q96DZ5 547 aa12.4□□□□□ -0.42
VPS33A-202ENST00000451053 MTERF1Q99551 399 aaKnown RBP12.4□□□□□ -0.42
VPS33A-202ENST00000451053 CCT7Q99832 543 aa12.4□□□□□ -0.42
VPS33A-202ENST00000451053 NLNQ9BYT8 704 aa12.4□□□□□ -0.42
VPS33A-202ENST00000451053 SLC7A5P2Q9GIP4 190 aa12.4□□□□□ -0.42
VPS33A-202ENST00000451053 SLC6A16Q9GZN6 736 aa12.4□□□□□ -0.42
VPS33A-202ENST00000451053 KLHL31Q9H511 634 aa12.4□□□□□ -0.42
VPS33A-202ENST00000451053 ZNF395Q9H8N7 513 aaPredicted RBP12.4□□□□□ -0.42
VPS33A-202ENST00000451053 AKIRIN1Q9H9L7 192 aaPredicted RBP12.4□□□□□ -0.42
VPS33A-202ENST00000451053 NPHS2Q9NP85 383 aa12.4□□□□□ -0.42
VPS33A-202ENST00000451053 ACSL6Q9UKU0 697 aa12.4□□□□□ -0.42
VPS33A-202ENST00000451053 SRPK3Q9UPE1 567 aa12.4□□□□□ -0.42
VPS33A-202ENST00000451053 TRAF6Q9Y4K3 522 aa12.4□□□□□ -0.42
VPS33A-202ENST00000451053 PCDHGA11Q9Y5H2 935 aa12.4□□□□□ -0.42
VPS33A-202ENST00000451053 SDK2Q58EX2 2172 aa12.4□□□□□ -0.42
VPS33A-202ENST00000451053 SPTBP11277 2137 aa12.4□□□□□ -0.43
VPS33A-202ENST00000451053 STMND1H3BQB6 276 aa12.39□□□□□ -0.43
VPS33A-202ENST00000451053 DSCR3O14972 297 aa12.39□□□□□ -0.43
VPS33A-202ENST00000451053 HDAC3O15379 428 aa12.39□□□□□ -0.43
VPS33A-202ENST00000451053 FOXS1O43638 330 aa12.39□□□□□ -0.43
VPS33A-202ENST00000451053 TLX3O43711 291 aaPredicted RBP12.39□□□□□ -0.43
VPS33A-202ENST00000451053 SH3BGRLO75368 114 aa12.39□□□□□ -0.43
VPS33A-202ENST00000451053 CAPNS1P04632 268 aa12.39□□□□□ -0.43
VPS33A-202ENST00000451053 CAPN1P07384 714 aa12.39□□□□□ -0.43
VPS33A-202ENST00000451053 SERPINA6P08185 405 aa12.39□□□□□ -0.43
VPS33A-202ENST00000451053 HBQ1P09105 142 aa12.39□□□□□ -0.43
VPS33A-202ENST00000451053 ATXN8OSP0DMR3 200 aa12.39□□□□□ -0.43
VPS33A-202ENST00000451053 KITP10721 976 aa12.39□□□□□ -0.43
VPS33A-202ENST00000451053 UROSP10746 265 aa12.39□□□□□ -0.43
VPS33A-202ENST00000451053 ITGAXP20702 1163 aa12.39□□□□□ -0.43
VPS33A-202ENST00000451053 ALAS2P22557 587 aa12.39□□□□□ -0.43
VPS33A-202ENST00000451053 CD82P27701 267 aa12.39□□□□□ -0.43
VPS33A-202ENST00000451053 GSTM2P28161 218 aa12.39□□□□□ -0.43
VPS33A-202ENST00000451053 HMOX2P30519 316 aa12.39□□□□□ -0.43
VPS33A-202ENST00000451053 SERPINB1P30740 379 aa12.39□□□□□ -0.43
VPS33A-202ENST00000451053 HNRNPH1P31943 449 aaKnown RBP12.39□□□□□ -0.43
VPS33A-202ENST00000451053 RORAP35398 523 aa12.39□□□□□ -0.43
VPS33A-202ENST00000451053 HTR6P50406 440 aa12.39□□□□□ -0.43
VPS33A-202ENST00000451053 ARSFP54793 590 aa12.39□□□□□ -0.43
VPS33A-202ENST00000451053 EMP3P54852 163 aa12.39□□□□□ -0.43
VPS33A-202ENST00000451053 FOXA1P55317 472 aa12.39□□□□□ -0.43
VPS33A-202ENST00000451053 MUM1Q2TAK8 710 aa12.39□□□□□ -0.43
VPS33A-202ENST00000451053 SGO1Q5FBB7 561 aa12.39□□□□□ -0.43
VPS33A-202ENST00000451053 TOR1AIP1Q5JTV8 583 aa12.39□□□□□ -0.43
VPS33A-202ENST00000451053 YOD1Q5VVQ6 348 aaPredicted RBP12.39□□□□□ -0.43
VPS33A-202ENST00000451053 KANK2Q63ZY3 851 aa12.39□□□□□ -0.43
VPS33A-202ENST00000451053 FRG2Q64ET8 278 aa12.39□□□□□ -0.43
VPS33A-202ENST00000451053 ZNF385CQ66K41 422 aaPredicted RBP12.39□□□□□ -0.43
VPS33A-202ENST00000451053 LCN10Q6JVE6 187 aa12.39□□□□□ -0.43
VPS33A-202ENST00000451053 C6orf15Q6UXA7 325 aaPredicted RBP12.39□□□□□ -0.43
VPS33A-202ENST00000451053 METTL27Q8N6F8 245 aaPredicted RBP12.39□□□□□ -0.43
VPS33A-202ENST00000451053 AGR3Q8TD06 166 aa12.39□□□□□ -0.43
VPS33A-202ENST00000451053 STON2Q8WXE9 905 aa12.39□□□□□ -0.43
VPS33A-202ENST00000451053 REPS1Q96D71 796 aa12.39□□□□□ -0.43
VPS33A-202ENST00000451053 MTFMTQ96DP5 389 aaKnown RBP12.39□□□□□ -0.43
VPS33A-202ENST00000451053 SEC16BQ96JE7 1060 aa12.39□□□□□ -0.43
VPS33A-202ENST00000451053 GBP5Q96PP8 586 aa12.39□□□□□ -0.43
VPS33A-202ENST00000451053 FRG2BQ96QU4 278 aa12.39□□□□□ -0.43
VPS33A-202ENST00000451053 ELAC2Q9BQ52 826 aaKnown RBP12.39□□□□□ -0.43
VPS33A-202ENST00000451053 MS4A8Q9BY19 250 aa12.39□□□□□ -0.43
VPS33A-202ENST00000451053 SLC29A3Q9BZD2 475 aa12.39□□□□□ -0.43
VPS33A-202ENST00000451053 CCDC86Q9H6F5 360 aaKnown RBP12.39□□□□□ -0.43
VPS33A-202ENST00000451053 PRM3Q9NNZ6 103 aa12.39□□□□□ -0.43
VPS33A-202ENST00000451053 DMRT3Q9NQL9 472 aa12.39□□□□□ -0.43
VPS33A-202ENST00000451053 FARSBQ9NSD9 589 aaKnown RBP12.39□□□□□ -0.43
VPS33A-202ENST00000451053 TXLNGQ9NUQ3 528 aa12.39□□□□□ -0.43
VPS33A-202ENST00000451053 PNPOQ9NVS9 261 aa12.39□□□□□ -0.43
VPS33A-202ENST00000451053 DKK4Q9UBT3 224 aa12.39□□□□□ -0.43
VPS33A-202ENST00000451053 MARCOQ9UEW3 520 aaPredicted RBP12.39□□□□□ -0.43
VPS33A-202ENST00000451053 NDOR1Q9UHB4 597 aa12.39□□□□□ -0.43
VPS33A-202ENST00000451053 ZDHHC2Q9UIJ5 367 aa12.39□□□□□ -0.43
VPS33A-202ENST00000451053 TSC22D4Q9Y3Q8 395 aa12.39□□□□□ -0.43
VPS33A-202ENST00000451053 TIMM22Q9Y584 194 aa12.39□□□□□ -0.43
VPS33A-202ENST00000451053 USH1CQ9Y6N9 552 aa12.39□□□□□ -0.43
VPS33A-202ENST00000451053 A0A0A6YYC8 382 aaPredicted RBP12.38□□□□□ -0.43
VPS33A-202ENST00000451053 A0A1B0GX78 115 aa12.38□□□□□ -0.43
VPS33A-202ENST00000451053 MAGEB17A8MXT2 336 aa12.38□□□□□ -0.43
VPS33A-202ENST00000451053 IQCJ-SCHIP1C9J366 451 aaPredicted RBP12.38□□□□□ -0.43
VPS33A-202ENST00000451053 I3L1I5 382 aaPredicted RBP12.38□□□□□ -0.43
VPS33A-202ENST00000451053 MEN1O00255 615 aa12.38□□□□□ -0.43
VPS33A-202ENST00000451053 MANBAO00462 879 aa12.38□□□□□ -0.43
VPS33A-202ENST00000451053 SNX3O60493 162 aa12.38□□□□□ -0.43
VPS33A-202ENST00000451053 RAD1O60671 282 aa12.38□□□□□ -0.43
VPS33A-202ENST00000451053 B3GALT4O96024 378 aa12.38□□□□□ -0.43
VPS33A-202ENST00000451053 TGFB1P01137 390 aa12.38□□□□□ -0.43
VPS33A-202ENST00000451053 KRT6AP02538 564 aa12.38□□□□□ -0.43
VPS33A-202ENST00000451053 KRT6BP04259 564 aa12.38□□□□□ -0.43
VPS33A-202ENST00000451053 ZNF888P0CJ79 500 aaPredicted RBP12.38□□□□□ -0.43
VPS33A-202ENST00000451053 ALOX15P16050 662 aaPredicted RBP12.38□□□□□ -0.43
VPS33A-202ENST00000451053 IL1RNP18510 177 aa12.38□□□□□ -0.43
VPS33A-202ENST00000451053 PIK3CBP42338 1070 aa12.38□□□□□ -0.43
VPS33A-202ENST00000451053 KRT6CP48668 564 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms