RNA–Protein interactions for RNA: ENST00000449264.2

TNF-208, Transcript of tumor necrosis factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TNF, Length 1,676 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNF-208ENST00000449264 SPIN4Q56A73 249 aa13.95□□□□□ -0.18
TNF-208ENST00000449264 DEPDC1Q5TB30 811 aa13.95□□□□□ -0.18
TNF-208ENST00000449264 RBM44Q6ZP01 1051 aaKnown RBP13.95□□□□□ -0.18
TNF-208ENST00000449264 ARHGAP22Q7Z5H3 698 aa13.95□□□□□ -0.18
TNF-208ENST00000449264 D2HGDHQ8N465 521 aa13.95□□□□□ -0.18
TNF-208ENST00000449264 NT5CQ8TCD5 201 aa13.95□□□□□ -0.18
TNF-208ENST00000449264 C17orf62Q9BQA9 187 aa13.95□□□□□ -0.18
TNF-208ENST00000449264 NLNQ9BYT8 704 aa13.95□□□□□ -0.18
TNF-208ENST00000449264 SLC6A16Q9GZN6 736 aa13.95□□□□□ -0.18
TNF-208ENST00000449264 NMUR2Q9GZQ4 415 aa13.95□□□□□ -0.18
TNF-208ENST00000449264 PDP2Q9P2J9 529 aa13.95□□□□□ -0.18
TNF-208ENST00000449264 C4orf51C9J302 202 aa13.94□□□□□ -0.18
TNF-208ENST00000449264 FCHO1O14526 889 aa13.94□□□□□ -0.18
TNF-208ENST00000449264 DCTN3O75935 186 aa13.94□□□□□ -0.18
TNF-208ENST00000449264 SEMA3DO95025 777 aa13.94□□□□□ -0.18
TNF-208ENST00000449264 GBAP04062 536 aa13.94□□□□□ -0.18
TNF-208ENST00000449264 ZNF888P0CJ79 500 aaPredicted RBP13.94□□□□□ -0.18
TNF-208ENST00000449264 FOLR1P15328 257 aa13.94□□□□□ -0.18
TNF-208ENST00000449264 GABRA4P48169 554 aa13.94□□□□□ -0.18
TNF-208ENST00000449264 PDX1P52945 283 aa13.94□□□□□ -0.18
TNF-208ENST00000449264 NME5P56597 212 aa13.94□□□□□ -0.18
TNF-208ENST00000449264 CLDN6P56747 220 aa13.94□□□□□ -0.18
TNF-208ENST00000449264 RAB8AP61006 207 aa13.94□□□□□ -0.18
TNF-208ENST00000449264 MAD2L1Q13257 205 aaPredicted RBP13.94□□□□□ -0.18
TNF-208ENST00000449264 ILKQ13418 452 aa13.94□□□□□ -0.18
TNF-208ENST00000449264 UBAP2LQ14157 1087 aaKnown RBP13.94□□□□□ -0.18
TNF-208ENST00000449264 WASHC2DQ5SRD0 308 aa13.94□□□□□ -0.18
TNF-208ENST00000449264 IL23RQ5VWK5 629 aa13.94□□□□□ -0.18
TNF-208ENST00000449264 OGFOD2Q6N063 350 aa13.94□□□□□ -0.18
TNF-208ENST00000449264 TRIM40Q6P9F5 258 aa13.94□□□□□ -0.18
TNF-208ENST00000449264 COMMD6Q7Z4G1 85 aa13.94□□□□□ -0.18
TNF-208ENST00000449264 CDC26Q8NHZ8 85 aa13.94□□□□□ -0.18
TNF-208ENST00000449264 MS4A6EQ96DS6 147 aa13.94□□□□□ -0.18
TNF-208ENST00000449264 TM4SF19Q96DZ7 209 aa13.94□□□□□ -0.18
TNF-208ENST00000449264 CHRNA10Q9GZZ6 450 aa13.94□□□□□ -0.18
TNF-208ENST00000449264 TOR4AQ9NXH8 423 aa13.94□□□□□ -0.18
TNF-208ENST00000449264 NOP53Q9NZM5 478 aaKnown RBP13.94□□□□□ -0.18
TNF-208ENST00000449264 ARMCX1Q9P291 453 aa13.94□□□□□ -0.18
TNF-208ENST00000449264 RUVBL1Q9Y265 456 aaKnown RBP13.94□□□□□ -0.18
TNF-208ENST00000449264 NPIPB8E9PQR5 432 aa13.93□□□□□ -0.18
TNF-208ENST00000449264 PCDH7O60245 1069 aa13.93□□□□□ -0.18
TNF-208ENST00000449264 MYO1DO94832 1006 aa13.93□□□□□ -0.18
TNF-208ENST00000449264 SSR2P43308 183 aa13.93□□□□□ -0.18
TNF-208ENST00000449264 E2F1Q01094 437 aa13.93□□□□□ -0.18
TNF-208ENST00000449264 EMX2Q04743 252 aa13.93□□□□□ -0.18
TNF-208ENST00000449264 KIAA0040Q15053 153 aa13.93□□□□□ -0.18
TNF-208ENST00000449264 ADPRMQ3LIE5 342 aa13.93□□□□□ -0.18
TNF-208ENST00000449264 TMEM35AQ53FP2 167 aa13.93□□□□□ -0.18
TNF-208ENST00000449264 DHRS13Q6UX07 377 aa13.93□□□□□ -0.18
TNF-208ENST00000449264 SPATA19Q7Z5L4 167 aa13.93□□□□□ -0.18
TNF-208ENST00000449264 METTL4Q8N3J2 472 aa13.93□□□□□ -0.18
TNF-208ENST00000449264 LIX1Q8N485 282 aa13.93□□□□□ -0.18
TNF-208ENST00000449264 OR2L5Q8NG80 312 aa13.93□□□□□ -0.18
TNF-208ENST00000449264 NETO1Q8TDF5 533 aa13.93□□□□□ -0.18
TNF-208ENST00000449264 CHTF18Q8WVB6 975 aa13.93□□□□□ -0.18
TNF-208ENST00000449264 GAL3ST3Q96A11 431 aa13.93□□□□□ -0.18
TNF-208ENST00000449264 RGMAQ96B86 450 aa13.93□□□□□ -0.18
TNF-208ENST00000449264 SLC45A3Q96JT2 553 aa13.93□□□□□ -0.18
TNF-208ENST00000449264 FANCEQ9HB96 536 aa13.93□□□□□ -0.18
TNF-208ENST00000449264 AHSPQ9NZD4 102 aa13.93□□□□□ -0.18
TNF-208ENST00000449264 EIF3LQ9Y262 564 aaKnown RBP13.93□□□□□ -0.18
TNF-208ENST00000449264 DLGAP4Q9Y2H0 992 aa13.93□□□□□ -0.18
TNF-208ENST00000449264 TMED5Q9Y3A6 229 aa13.93□□□□□ -0.18
TNF-208ENST00000449264 COPG1Q9Y678 874 aaKnown RBP13.93□□□□□ -0.18
TNF-208ENST00000449264 SPAARA0A1B0GVQ0 90 aa13.92□□□□□ -0.18
TNF-208ENST00000449264 GNG14A0A1W2PPG7 69 aa13.92□□□□□ -0.18
TNF-208ENST00000449264 ZSCAN9O15535 394 aaPredicted RBP13.92□□□□□ -0.18
TNF-208ENST00000449264 SRPX2O60687 465 aaPredicted RBP13.92□□□□□ -0.18
TNF-208ENST00000449264 CCDC22O60826 627 aa13.92□□□□□ -0.18
TNF-208ENST00000449264 B3GALT4O96024 378 aa13.92□□□□□ -0.18
TNF-208ENST00000449264 KLK1P06870 262 aa13.92□□□□□ -0.18
TNF-208ENST00000449264 MAPK1P28482 360 aa13.92□□□□□ -0.18
TNF-208ENST00000449264 TIA1P31483 386 aaKnown RBP eCLIP13.92□□□□□ -0.18
TNF-208ENST00000449264 CSTF2P33240 577 aaKnown RBP eCLIP13.92□□□□□ -0.18
TNF-208ENST00000449264 STX1BP61266 288 aa13.92□□□□□ -0.18
TNF-208ENST00000449264 SNRPNP63162 240 aaKnown RBP13.92□□□□□ -0.18
TNF-208ENST00000449264 INSM1Q01101 510 aaPredicted RBP13.92□□□□□ -0.18
TNF-208ENST00000449264 FOXM1Q08050 763 aa13.92□□□□□ -0.18
TNF-208ENST00000449264 TGM3Q08188 693 aa13.92□□□□□ -0.18
TNF-208ENST00000449264 PTGR1Q14914 329 aa13.92□□□□□ -0.18
TNF-208ENST00000449264 C16orf72Q14CZ0 275 aa13.92□□□□□ -0.18
TNF-208ENST00000449264 RPS6KA2Q15349 733 aa13.92□□□□□ -0.18
TNF-208ENST00000449264 METTL21CQ5VZV1 264 aa13.92□□□□□ -0.18
TNF-208ENST00000449264 NOXRED1Q6NXP6 359 aa13.92□□□□□ -0.18
TNF-208ENST00000449264 RIPOR1Q6ZS17 1223 aa13.92□□□□□ -0.18
TNF-208ENST00000449264 UBE3DQ7Z6J8 389 aa13.92□□□□□ -0.18
TNF-208ENST00000449264 NUDT13Q86X67 352 aa13.92□□□□□ -0.18
TNF-208ENST00000449264 CLHC1Q8NHS4 586 aa13.92□□□□□ -0.18
TNF-208ENST00000449264 ERP27Q96DN0 273 aa13.92□□□□□ -0.18
TNF-208ENST00000449264 KCNC2Q96PR1 638 aa13.92□□□□□ -0.18
TNF-208ENST00000449264 LRRC37BQ96QE4 947 aa13.92□□□□□ -0.18
TNF-208ENST00000449264 SPRTNQ9H040 489 aaPredicted RBP13.92□□□□□ -0.18
TNF-208ENST00000449264 COPS7BQ9H9Q2 264 aaPredicted RBP13.92□□□□□ -0.18
TNF-208ENST00000449264 SAR1AQ9NR31 198 aa13.92□□□□□ -0.18
TNF-208ENST00000449264 FGF21Q9NSA1 209 aa13.92□□□□□ -0.18
TNF-208ENST00000449264 AIG1Q9NVV5 245 aa13.92□□□□□ -0.18
TNF-208ENST00000449264 MRPS2Q9Y399 296 aaKnown RBP13.92□□□□□ -0.18
TNF-208ENST00000449264 PCDHGA1Q9Y5H4 931 aa13.92□□□□□ -0.18
TNF-208ENST00000449264 URADA6NGE7 173 aa13.91□□□□□ -0.18
TNF-208ENST00000449264 HYAL3O43820 417 aaPredicted RBP13.91□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms