RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 C14orf79Q96F83 325 aa12.48□□□□□ -0.41
HMGB3-204ENST00000448905 PBKQ96KB5 322 aa12.48□□□□□ -0.41
HMGB3-204ENST00000448905 SARGQ9BW04 601 aa12.48□□□□□ -0.41
HMGB3-204ENST00000448905 HES7Q9BYE0 225 aa12.48□□□□□ -0.41
HMGB3-204ENST00000448905 DEFB126Q9BYW3 111 aa12.48□□□□□ -0.41
HMGB3-204ENST00000448905 TRIM8Q9BZR9 551 aa12.48□□□□□ -0.41
HMGB3-204ENST00000448905 LANCL2Q9NS86 450 aa12.48□□□□□ -0.41
HMGB3-204ENST00000448905 ZFP69BQ9UJL9 534 aa12.48□□□□□ -0.41
HMGB3-204ENST00000448905 ADAMTS6Q9UKP5 1117 aa12.48□□□□□ -0.41
HMGB3-204ENST00000448905 FANCGO15287 622 aa12.47□□□□□ -0.41
HMGB3-204ENST00000448905 NME2P1O60361 137 aa12.47□□□□□ -0.41
HMGB3-204ENST00000448905 WISP2O76076 250 aa12.47□□□□□ -0.41
HMGB3-204ENST00000448905 NME2P22392 152 aa12.47□□□□□ -0.41
HMGB3-204ENST00000448905 PTGS2P35354 604 aa12.47□□□□□ -0.41
HMGB3-204ENST00000448905 SNRPNP63162 240 aaKnown RBP12.47□□□□□ -0.41
HMGB3-204ENST00000448905 CCDC137Q6PK04 289 aaKnown RBP12.47□□□□□ -0.41
HMGB3-204ENST00000448905 PAQR3Q6TCH7 311 aa12.47□□□□□ -0.41
HMGB3-204ENST00000448905 KIAA0408Q6ZU52 694 aa12.47□□□□□ -0.41
HMGB3-204ENST00000448905 PPIL6Q8IXY8 311 aa12.47□□□□□ -0.41
HMGB3-204ENST00000448905 ZNF295-AS1Q8N0V1 137 aa12.47□□□□□ -0.41
HMGB3-204ENST00000448905 C2CD4AQ8NCU7 369 aaPredicted RBP12.47□□□□□ -0.41
HMGB3-204ENST00000448905 ZNF740Q8NDX6 193 aa12.47□□□□□ -0.41
HMGB3-204ENST00000448905 OR5T3Q8NGG3 340 aa12.47□□□□□ -0.41
HMGB3-204ENST00000448905 LINGO1Q96FE5 620 aa12.47□□□□□ -0.41
HMGB3-204ENST00000448905 SIGLEC10Q96LC7 697 aa12.47□□□□□ -0.41
HMGB3-204ENST00000448905 TRIM51Q9BSJ1 452 aa12.47□□□□□ -0.41
HMGB3-204ENST00000448905 NAT9Q9BTE0 207 aa12.47□□□□□ -0.41
HMGB3-204ENST00000448905 RBCK1Q9BYM8 510 aa12.47□□□□□ -0.41
HMGB3-204ENST00000448905 TRIM45Q9H8W5 580 aaPredicted RBP12.47□□□□□ -0.41
HMGB3-204ENST00000448905 PPT2Q9UMR5 302 aa12.47□□□□□ -0.41
HMGB3-204ENST00000448905 KLF13Q9Y2Y9 288 aaPredicted RBP12.47□□□□□ -0.41
HMGB3-204ENST00000448905 CSMD1Q96PZ7 3565 aa12.47□□□□□ -0.41
HMGB3-204ENST00000448905 SVILO95425 2214 aa12.46□□□□□ -0.41
HMGB3-204ENST00000448905 PCM1Q15154 2024 aa12.46□□□□□ -0.41
HMGB3-204ENST00000448905 ZNF860A6NHJ4 632 aa12.46□□□□□ -0.41
HMGB3-204ENST00000448905 MAN1A2O60476 641 aa12.46□□□□□ -0.41
HMGB3-204ENST00000448905 RNH1P13489 461 aaKnown RBP12.46□□□□□ -0.41
HMGB3-204ENST00000448905 PGAM1P18669 254 aa12.46□□□□□ -0.41
HMGB3-204ENST00000448905 TPP2P29144 1249 aaPredicted RBP12.46□□□□□ -0.41
HMGB3-204ENST00000448905 TRHRP34981 398 aaPredicted RBP12.46□□□□□ -0.41
HMGB3-204ENST00000448905 AHRP35869 848 aa12.46□□□□□ -0.41
HMGB3-204ENST00000448905 KIR3DL1P43629 444 aa12.46□□□□□ -0.41
HMGB3-204ENST00000448905 ST13P50502 369 aaKnown RBP12.46□□□□□ -0.41
HMGB3-204ENST00000448905 MLF1P58340 268 aa12.46□□□□□ -0.41
HMGB3-204ENST00000448905 DHX9Q08211 1270 aaKnown RBP12.46□□□□□ -0.41
HMGB3-204ENST00000448905 PDAP1Q13442 181 aaKnown RBP12.46□□□□□ -0.41
HMGB3-204ENST00000448905 PAOXQ6QHF9 649 aa12.46□□□□□ -0.41
HMGB3-204ENST00000448905 QSOX2Q6ZRP7 698 aa12.46□□□□□ -0.41
HMGB3-204ENST00000448905 SIAH3Q8IW03 269 aa12.46□□□□□ -0.41
HMGB3-204ENST00000448905 NT5CQ8TCD5 201 aa12.46□□□□□ -0.41
HMGB3-204ENST00000448905 TSLPQ969D9 159 aa12.46□□□□□ -0.41
HMGB3-204ENST00000448905 SDCCAG3Q96C92 435 aa12.46□□□□□ -0.41
HMGB3-204ENST00000448905 NDNQ99608 321 aa12.46□□□□□ -0.41
HMGB3-204ENST00000448905 NPAS2Q99743 824 aa12.46□□□□□ -0.41
HMGB3-204ENST00000448905 PPANQ9NQ55 473 aaKnown RBP12.46□□□□□ -0.41
HMGB3-204ENST00000448905 PRDM9Q9NQV7 894 aa12.46□□□□□ -0.41
HMGB3-204ENST00000448905 DYRK1BQ9Y463 629 aa12.46□□□□□ -0.41
HMGB3-204ENST00000448905 KCNE2Q9Y6J6 123 aa12.46□□□□□ -0.41
HMGB3-204ENST00000448905 GOLGA6L10A0A0M3HER8 536 aa12.45□□□□□ -0.42
HMGB3-204ENST00000448905 FOXO6A8MYZ6 492 aa12.45□□□□□ -0.42
HMGB3-204ENST00000448905 CLDN4O14493 209 aa12.45□□□□□ -0.42
HMGB3-204ENST00000448905 TFECO14948 347 aaPredicted RBP12.45□□□□□ -0.42
HMGB3-204ENST00000448905 H2AFYO75367 372 aaKnown RBP12.45□□□□□ -0.42
HMGB3-204ENST00000448905 AHSGP02765 367 aa12.45□□□□□ -0.42
HMGB3-204ENST00000448905 F7P08709 466 aaPredicted RBP12.45□□□□□ -0.42
HMGB3-204ENST00000448905 ENO2P09104 434 aaPredicted RBP12.45□□□□□ -0.42
HMGB3-204ENST00000448905 ZNF888P0CJ79 500 aaPredicted RBP12.45□□□□□ -0.42
HMGB3-204ENST00000448905 MAGEA3P43357 314 aa12.45□□□□□ -0.42
HMGB3-204ENST00000448905 CLCN2P51788 898 aa12.45□□□□□ -0.42
HMGB3-204ENST00000448905 ITGA8P53708 1063 aa12.45□□□□□ -0.42
HMGB3-204ENST00000448905 TLE4Q04727 773 aa12.45□□□□□ -0.42
HMGB3-204ENST00000448905 RBBP5Q15291 538 aaKnown RBP12.45□□□□□ -0.42
HMGB3-204ENST00000448905 SPANXN3Q5MJ09 141 aa12.45□□□□□ -0.42
HMGB3-204ENST00000448905 TTC27Q6P3X3 843 aa12.45□□□□□ -0.42
HMGB3-204ENST00000448905 MYO7BQ6PIF6 2116 aa12.45□□□□□ -0.42
HMGB3-204ENST00000448905 MBOAT1Q6ZNC8 495 aa12.45□□□□□ -0.42
HMGB3-204ENST00000448905 TMEM156Q8N614 296 aa12.45□□□□□ -0.42
HMGB3-204ENST00000448905 CPSF7Q8N684 471 aaKnown RBP12.45□□□□□ -0.42
HMGB3-204ENST00000448905 NAT8LQ8N9F0 302 aa12.45□□□□□ -0.42
HMGB3-204ENST00000448905 OR56A3Q8NH54 315 aa12.45□□□□□ -0.42
HMGB3-204ENST00000448905 ASB5Q8WWX0 329 aa12.45□□□□□ -0.42
HMGB3-204ENST00000448905 SLC5A11Q8WWX8 675 aa12.45□□□□□ -0.42
HMGB3-204ENST00000448905 PYCR2Q96C36 320 aa12.45□□□□□ -0.42
HMGB3-204ENST00000448905 FBXL8Q96CD0 374 aa12.45□□□□□ -0.42
HMGB3-204ENST00000448905 FAR2Q96K12 515 aa12.45□□□□□ -0.42
HMGB3-204ENST00000448905 AIF1LQ9BQI0 150 aa12.45□□□□□ -0.42
HMGB3-204ENST00000448905 CCDC77Q9BR77 488 aa12.45□□□□□ -0.42
HMGB3-204ENST00000448905 RHBGQ9H310 441 aa12.45□□□□□ -0.42
HMGB3-204ENST00000448905 MCCC2Q9HCC0 563 aa12.45□□□□□ -0.42
HMGB3-204ENST00000448905 VWA7Q9Y334 891 aa12.45□□□□□ -0.42
HMGB3-204ENST00000448905 JRKLQ9Y4A0 524 aa12.45□□□□□ -0.42
HMGB3-204ENST00000448905 ABCA12Q86UK0 2595 aa12.44□□□□□ -0.42
HMGB3-204ENST00000448905 SYNDIG1LA6NDD5 238 aa12.44□□□□□ -0.42
HMGB3-204ENST00000448905 SAGE2PA6NJ88 616 aa12.44□□□□□ -0.42
HMGB3-204ENST00000448905 PEX1O43933 1283 aa12.44□□□□□ -0.42
HMGB3-204ENST00000448905 GUCA1CO95843 209 aa12.44□□□□□ -0.42
HMGB3-204ENST00000448905 TPOP07202 933 aa12.44□□□□□ -0.42
HMGB3-204ENST00000448905 HPDP32754 393 aaPredicted RBP12.44□□□□□ -0.42
HMGB3-204ENST00000448905 HNF4AP41235 474 aa12.44□□□□□ -0.42
HMGB3-204ENST00000448905 SCTRP47872 440 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms