RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 FAM129AQ9BZQ8 928 aa13.64□□□□□ -0.23
SDC1-204ENST00000429035 SPNS1Q9H2V7 528 aa13.64□□□□□ -0.23
SDC1-204ENST00000429035 LANCL2Q9NS86 450 aa13.64□□□□□ -0.23
SDC1-204ENST00000429035 LRFN1Q9P244 771 aa13.64□□□□□ -0.23
SDC1-204ENST00000429035 CHMP2BQ9UQN3 213 aa13.64□□□□□ -0.23
SDC1-204ENST00000429035 DYRK1BQ9Y463 629 aa13.64□□□□□ -0.23
SDC1-204ENST00000429035 SLC22A7Q9Y694 548 aa13.64□□□□□ -0.23
SDC1-204ENST00000429035 CSMD1Q96PZ7 3565 aa13.63□□□□□ -0.23
SDC1-204ENST00000429035 TRBC2A0A5B9 178 aa13.63□□□□□ -0.23
SDC1-204ENST00000429035 A8MUA0 341 aa13.63□□□□□ -0.23
SDC1-204ENST00000429035 PSMD12O00232 456 aaPredicted RBP13.63□□□□□ -0.23
SDC1-204ENST00000429035 ZNHIT1O43257 154 aa13.63□□□□□ -0.23
SDC1-204ENST00000429035 CHST10O43529 356 aa13.63□□□□□ -0.23
SDC1-204ENST00000429035 GALR3O60755 368 aaPredicted RBP13.63□□□□□ -0.23
SDC1-204ENST00000429035 TTC4O95801 387 aa13.63□□□□□ -0.23
SDC1-204ENST00000429035 NPPBP16860 134 aa13.63□□□□□ -0.23
SDC1-204ENST00000429035 GABRB3P28472 473 aa13.63□□□□□ -0.23
SDC1-204ENST00000429035 SMSP52788 366 aa13.63□□□□□ -0.23
SDC1-204ENST00000429035 ADORA2A-AS1P86434 159 aa13.63□□□□□ -0.23
SDC1-204ENST00000429035 HSF1Q00613 529 aa13.63□□□□□ -0.23
SDC1-204ENST00000429035 CSHL1Q14406 222 aa13.63□□□□□ -0.23
SDC1-204ENST00000429035 DUPD1Q68J44 220 aa13.63□□□□□ -0.23
SDC1-204ENST00000429035 FAM45BPQ6NSW5 357 aa13.63□□□□□ -0.23
SDC1-204ENST00000429035 H3F3CQ6NXT2 135 aa13.63□□□□□ -0.23
SDC1-204ENST00000429035 NCCRP1Q6ZVX7 275 aaPredicted RBP13.63□□□□□ -0.23
SDC1-204ENST00000429035 PNPLA5Q7Z6Z6 429 aaPredicted RBP13.63□□□□□ -0.23
SDC1-204ENST00000429035 PLPP5Q8NEB5 264 aa13.63□□□□□ -0.23
SDC1-204ENST00000429035 OR56A3Q8NH54 315 aa13.63□□□□□ -0.23
SDC1-204ENST00000429035 FAM45AQ8TCE6 357 aa13.63□□□□□ -0.23
SDC1-204ENST00000429035 SLC5A11Q8WWX8 675 aa13.63□□□□□ -0.23
SDC1-204ENST00000429035 SCMH1Q96GD3 660 aa13.63□□□□□ -0.23
SDC1-204ENST00000429035 PTCHD1Q96NR3 888 aa13.63□□□□□ -0.23
SDC1-204ENST00000429035 OR4K3Q96R72 315 aa13.63□□□□□ -0.23
SDC1-204ENST00000429035 OSBPL9Q96SU4 736 aa13.63□□□□□ -0.23
SDC1-204ENST00000429035 DDX47Q9H0S4 455 aaKnown RBP13.63□□□□□ -0.23
SDC1-204ENST00000429035 CHST11Q9NPF2 352 aa13.63□□□□□ -0.23
SDC1-204ENST00000429035 NPEPPSL1A6NEC2 478 aa13.62□□□□□ -0.23
SDC1-204ENST00000429035 DNAJB6O75190 326 aa13.62□□□□□ -0.23
SDC1-204ENST00000429035 SLC25A12O75746 678 aa13.62□□□□□ -0.23
SDC1-204ENST00000429035 AHSGP02765 367 aa13.62□□□□□ -0.23
SDC1-204ENST00000429035 ZNF24P17028 368 aa13.62□□□□□ -0.23
SDC1-204ENST00000429035 IL10P22301 178 aa13.62□□□□□ -0.23
SDC1-204ENST00000429035 ELAVL4P26378 380 aaKnown RBP13.62□□□□□ -0.23
SDC1-204ENST00000429035 TPP2P29144 1249 aaPredicted RBP13.62□□□□□ -0.23
SDC1-204ENST00000429035 AP1S2P56377 157 aa13.62□□□□□ -0.23
SDC1-204ENST00000429035 RAB8AP61006 207 aa13.62□□□□□ -0.23
SDC1-204ENST00000429035 REEP5Q00765 189 aa13.62□□□□□ -0.23
SDC1-204ENST00000429035 RBBP5Q15291 538 aaKnown RBP13.62□□□□□ -0.23
SDC1-204ENST00000429035 MSS51Q4VC12 460 aa13.62□□□□□ -0.23
SDC1-204ENST00000429035 SLC25A25Q6KCM7 469 aa13.62□□□□□ -0.23
SDC1-204ENST00000429035 KIAA0408Q6ZU52 694 aa13.62□□□□□ -0.23
SDC1-204ENST00000429035 PCGF5Q86SE9 256 aa13.62□□□□□ -0.23
SDC1-204ENST00000429035 ABHD11Q8NFV4 315 aa13.62□□□□□ -0.23
SDC1-204ENST00000429035 ATL1Q8WXF7 558 aa13.62□□□□□ -0.23
SDC1-204ENST00000429035 CCT6BQ92526 530 aa13.62□□□□□ -0.23
SDC1-204ENST00000429035 NEIL2Q969S2 332 aa13.62□□□□□ -0.23
SDC1-204ENST00000429035 FBXL8Q96CD0 374 aa13.62□□□□□ -0.23
SDC1-204ENST00000429035 OLFM1Q99784 485 aa13.62□□□□□ -0.23
SDC1-204ENST00000429035 EGFL8Q99944 293 aa13.62□□□□□ -0.23
SDC1-204ENST00000429035 PRM3Q9NNZ6 103 aa13.62□□□□□ -0.23
SDC1-204ENST00000429035 LRBAP50851 2863 aa13.61□□□□□ -0.23
SDC1-204ENST00000429035 SAGE2PA6NJ88 616 aa13.61□□□□□ -0.23
SDC1-204ENST00000429035 PRMT3O60678 531 aa13.61□□□□□ -0.23
SDC1-204ENST00000429035 TSPAN12O95859 305 aa13.61□□□□□ -0.23
SDC1-204ENST00000429035 SP1P08047 785 aa13.61□□□□□ -0.23
SDC1-204ENST00000429035 MAOAP21397 527 aa13.61□□□□□ -0.23
SDC1-204ENST00000429035 PTGER4P35408 488 aa13.61□□□□□ -0.23
SDC1-204ENST00000429035 SCTRP47872 440 aa13.61□□□□□ -0.23
SDC1-204ENST00000429035 BTG2P78543 158 aa13.61□□□□□ -0.23
SDC1-204ENST00000429035 HYAL2Q12891 473 aa13.61□□□□□ -0.23
SDC1-204ENST00000429035 PWP1Q13610 501 aa13.61□□□□□ -0.23
SDC1-204ENST00000429035 ZNF630Q2M218 657 aaPredicted RBP13.61□□□□□ -0.23
SDC1-204ENST00000429035 ZXDCQ2QGD7 858 aaPredicted RBP13.61□□□□□ -0.23
SDC1-204ENST00000429035 TOR1AIP1Q5JTV8 583 aa13.61□□□□□ -0.23
SDC1-204ENST00000429035 ZNF468Q5VIY5 522 aaPredicted RBP13.61□□□□□ -0.23
SDC1-204ENST00000429035 NIPAL1Q6NVV3 410 aa13.61□□□□□ -0.23
SDC1-204ENST00000429035 C3P1Q6ZMU1 363 aa13.61□□□□□ -0.23
SDC1-204ENST00000429035 FRA10AC1Q70Z53 315 aa13.61□□□□□ -0.23
SDC1-204ENST00000429035 RPS19BP1Q86WX3 136 aaKnown RBP13.61□□□□□ -0.23
SDC1-204ENST00000429035 SPPL2CQ8IUH8 684 aa13.61□□□□□ -0.23
SDC1-204ENST00000429035 IGDCC3Q8IVU1 814 aa13.61□□□□□ -0.23
SDC1-204ENST00000429035 CNTN4Q8IWV2 1026 aa13.61□□□□□ -0.23
SDC1-204ENST00000429035 GHDCQ8N2G8 530 aa13.61□□□□□ -0.23
SDC1-204ENST00000429035 AFAP1L2Q8N4X5 818 aa13.61□□□□□ -0.23
SDC1-204ENST00000429035 CPSF7Q8N684 471 aaKnown RBP13.61□□□□□ -0.23
SDC1-204ENST00000429035 NT5CQ8TCD5 201 aa13.61□□□□□ -0.23
SDC1-204ENST00000429035 ACTRT1Q8TDG2 376 aa13.61□□□□□ -0.23
SDC1-204ENST00000429035 THAP3Q8WTV1 239 aaPredicted RBP13.61□□□□□ -0.23
SDC1-204ENST00000429035 TMEM125Q96AQ2 219 aa13.61□□□□□ -0.23
SDC1-204ENST00000429035 PWWP2AQ96N64 755 aa13.61□□□□□ -0.23
SDC1-204ENST00000429035 AIF1LQ9BQI0 150 aa13.61□□□□□ -0.23
SDC1-204ENST00000429035 NAT9Q9BTE0 207 aa13.61□□□□□ -0.23
SDC1-204ENST00000429035 ZFP69BQ9UJL9 534 aa13.61□□□□□ -0.23
SDC1-204ENST00000429035 PCDHGB6Q9Y5F9 930 aa13.61□□□□□ -0.23
SDC1-204ENST00000429035 A0A0G2JN53 185 aa13.6□□□□□ -0.23
SDC1-204ENST00000429035 TRBV11-1A0A0K0K1C0 115 aa13.6□□□□□ -0.23
SDC1-204ENST00000429035 ASPDHA6ND91 283 aa13.6□□□□□ -0.23
SDC1-204ENST00000429035 URADA6NGE7 173 aa13.6□□□□□ -0.23
SDC1-204ENST00000429035 FCHO1O14526 889 aa13.6□□□□□ -0.23
SDC1-204ENST00000429035 TFECO14948 347 aaPredicted RBP13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 56.8 ms