RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 SMU1Q2TAY7 513 aa9.63□□□□□ -0.87
CD44-207ENST00000425428 DEPDC1Q5TB30 811 aa9.63□□□□□ -0.87
CD44-207ENST00000425428 SCIMPQ6UWF3 145 aa9.63□□□□□ -0.87
CD44-207ENST00000425428 SPATA19Q7Z5L4 167 aa9.63□□□□□ -0.87
CD44-207ENST00000425428 NUDT13Q86X67 352 aa9.63□□□□□ -0.87
CD44-207ENST00000425428 OR2L5Q8NG80 312 aa9.63□□□□□ -0.87
CD44-207ENST00000425428 CLIP3Q96DZ5 547 aa9.63□□□□□ -0.87
CD44-207ENST00000425428 ZNF317Q96PQ6 595 aaPredicted RBP9.63□□□□□ -0.87
CD44-207ENST00000425428 ELAC2Q9BQ52 826 aaKnown RBP9.63□□□□□ -0.87
CD44-207ENST00000425428 MS4A8Q9BY19 250 aa9.63□□□□□ -0.87
CD44-207ENST00000425428 FAM60AQ9NP50 221 aa9.63□□□□□ -0.87
CD44-207ENST00000425428 FBXO8Q9NRD0 319 aa9.63□□□□□ -0.87
CD44-207ENST00000425428 NOP53Q9NZM5 478 aaKnown RBP9.63□□□□□ -0.87
CD44-207ENST00000425428 DNAH14Q0VDD8 3507 aa9.63□□□□□ -0.87
CD44-207ENST00000425428 DMDP11532 3685 aa9.63□□□□□ -0.87
CD44-207ENST00000425428 LOC105369274A0A096LPK9 316 aa9.63□□□□□ -0.87
CD44-207ENST00000425428 LOC102723532A0A0G2JNH3 316 aa9.63□□□□□ -0.87
CD44-207ENST00000425428 LRIT2A6NDA9 550 aa9.63□□□□□ -0.87
CD44-207ENST00000425428 HAX1O00165 279 aa9.63□□□□□ -0.87
CD44-207ENST00000425428 PSMD12O00232 456 aaPredicted RBP9.63□□□□□ -0.87
CD44-207ENST00000425428 AGRPO00253 132 aa9.63□□□□□ -0.87
CD44-207ENST00000425428 PLD2O14939 933 aa9.63□□□□□ -0.87
CD44-207ENST00000425428 B3GALT2O43825 422 aa9.63□□□□□ -0.87
CD44-207ENST00000425428 SHOX2O60902 331 aaPredicted RBP9.63□□□□□ -0.87
CD44-207ENST00000425428 PEX11AO75192 247 aa9.63□□□□□ -0.87
CD44-207ENST00000425428 SCRG1O75711 98 aa9.63□□□□□ -0.87
CD44-207ENST00000425428 FAM107AO95990 144 aa9.63□□□□□ -0.87
CD44-207ENST00000425428 KLK3P07288 261 aaPredicted RBP9.63□□□□□ -0.87
CD44-207ENST00000425428 FOLR1P15328 257 aa9.63□□□□□ -0.87
CD44-207ENST00000425428 AGXTP21549 392 aa9.63□□□□□ -0.87
CD44-207ENST00000425428 RBMS1P29558 406 aaKnown RBP9.63□□□□□ -0.87
CD44-207ENST00000425428 TLX1P31314 330 aaPredicted RBP9.63□□□□□ -0.87
CD44-207ENST00000425428 GSTM5P46439 218 aa9.63□□□□□ -0.87
CD44-207ENST00000425428 MAPK10P53779 464 aa9.63□□□□□ -0.87
CD44-207ENST00000425428 PLA2G16P53816 162 aa9.63□□□□□ -0.87
CD44-207ENST00000425428 MC2RQ01718 297 aa9.63□□□□□ -0.87
CD44-207ENST00000425428 PUM1Q14671 1186 aaKnown RBP eCLIP9.63□□□□□ -0.87
CD44-207ENST00000425428 TCHHL1Q5QJ38 904 aaPredicted RBP9.63□□□□□ -0.87
CD44-207ENST00000425428 CCNYL2Q5T2Q4 361 aa9.63□□□□□ -0.87
CD44-207ENST00000425428 CDCP2Q5VXM1 449 aa9.63□□□□□ -0.87
CD44-207ENST00000425428 OR4C11Q6IEV9 310 aa9.63□□□□□ -0.87
CD44-207ENST00000425428 FRMPD2BQ6IN97 320 aa9.63□□□□□ -0.87
CD44-207ENST00000425428 EPGNQ6UW88 154 aa9.63□□□□□ -0.87
CD44-207ENST00000425428 SLCO6A1Q86UG4 719 aa9.63□□□□□ -0.87
CD44-207ENST00000425428 ALYREFQ86V81 257 aaKnown RBP9.63□□□□□ -0.87
CD44-207ENST00000425428 OR4N4Q8N0Y3 316 aa9.63□□□□□ -0.87
CD44-207ENST00000425428 ANKRD53Q8N9V6 530 aa9.63□□□□□ -0.87
CD44-207ENST00000425428 ZCCHC10Q8TBK6 192 aa9.63□□□□□ -0.87
CD44-207ENST00000425428 ADAMTS14Q8WXS8 1223 aa9.63□□□□□ -0.87
CD44-207ENST00000425428 MVB12AQ96EY5 273 aa9.63□□□□□ -0.87
CD44-207ENST00000425428 THOC1Q96FV9 657 aaKnown RBP9.63□□□□□ -0.87
CD44-207ENST00000425428 TAAR9Q96RI9 348 aa9.63□□□□□ -0.87
CD44-207ENST00000425428 HBEGFQ99075 208 aa9.63□□□□□ -0.87
CD44-207ENST00000425428 C17orf62Q9BQA9 187 aa9.63□□□□□ -0.87
CD44-207ENST00000425428 CCDC28BQ9BUN5 200 aa9.63□□□□□ -0.87
CD44-207ENST00000425428 SPNS1Q9H2V7 528 aa9.63□□□□□ -0.87
CD44-207ENST00000425428 OR51B5Q9H339 312 aa9.63□□□□□ -0.87
CD44-207ENST00000425428 WDR41Q9HAD4 459 aa9.63□□□□□ -0.87
CD44-207ENST00000425428 FARSBQ9NSD9 589 aaKnown RBP9.63□□□□□ -0.87
CD44-207ENST00000425428 SLC22A7Q9Y694 548 aa9.63□□□□□ -0.87
CD44-207ENST00000425428 SCN3AQ9NY46 2000 aa9.62□□□□□ -0.87
CD44-207ENST00000425428 GVINP1Q7Z2Y8 2422 aa9.62□□□□□ -0.87
CD44-207ENST00000425428 A0A1B0GTL3 188 aa9.62□□□□□ -0.87
CD44-207ENST00000425428 ATP6AP2A0A1C7CYW4 349 aa9.62□□□□□ -0.87
CD44-207ENST00000425428 TM4SF5O14894 197 aa9.62□□□□□ -0.87
CD44-207ENST00000425428 UBDO15205 165 aa9.62□□□□□ -0.87
CD44-207ENST00000425428 PRAMEF4O60810 478 aa9.62□□□□□ -0.87
CD44-207ENST00000425428 CCDC22O60826 627 aa9.62□□□□□ -0.87
CD44-207ENST00000425428 SH3BGRLO75368 114 aa9.62□□□□□ -0.87
CD44-207ENST00000425428 ATP6AP2O75787 350 aa9.62□□□□□ -0.87
CD44-207ENST00000425428 PRPS2P11908 318 aa9.62□□□□□ -0.87
CD44-207ENST00000425428 ALOX12P18054 663 aa9.62□□□□□ -0.87
CD44-207ENST00000425428 ARRB2P32121 409 aa9.62□□□□□ -0.87
CD44-207ENST00000425428 RPL3P39023 403 aaKnown RBP9.62□□□□□ -0.87
CD44-207ENST00000425428 PLA2G5P39877 138 aa9.62□□□□□ -0.87
CD44-207ENST00000425428 ASMTP46597 345 aa9.62□□□□□ -0.87
CD44-207ENST00000425428 MTTPP55157 894 aa9.62□□□□□ -0.87
CD44-207ENST00000425428 ERVK-8P63133 956 aa9.62□□□□□ -0.87
CD44-207ENST00000425428 RPL38P63173 70 aaKnown RBP9.62□□□□□ -0.87
CD44-207ENST00000425428 HMGCS1Q01581 520 aa9.62□□□□□ -0.87
CD44-207ENST00000425428 FAM53BQ14153 422 aa9.62□□□□□ -0.87
CD44-207ENST00000425428 SLC9A5Q14940 896 aa9.62□□□□□ -0.87
CD44-207ENST00000425428 UGT3A2Q3SY77 523 aa9.62□□□□□ -0.87
CD44-207ENST00000425428 LARP7Q4G0J3 582 aaKnown RBP eCLIP9.62□□□□□ -0.87
CD44-207ENST00000425428 PRAMEF9Q5VWM5 478 aa9.62□□□□□ -0.87
CD44-207ENST00000425428 CES4AQ5XG92 561 aa9.62□□□□□ -0.87
CD44-207ENST00000425428 PRMT9Q6P2P2 845 aa9.62□□□□□ -0.87
CD44-207ENST00000425428 TMPRSS9Q7Z410 1059 aa9.62□□□□□ -0.87
CD44-207ENST00000425428 B3GNT8Q7Z7M8 397 aa9.62□□□□□ -0.87
CD44-207ENST00000425428 BCAS4Q8TDM0 211 aa9.62□□□□□ -0.87
CD44-207ENST00000425428 ACTRT2Q8TDY3 377 aa9.62□□□□□ -0.87
CD44-207ENST00000425428 CREB3L4Q8TEY5 395 aa9.62□□□□□ -0.87
CD44-207ENST00000425428 STON2Q8WXE9 905 aa9.62□□□□□ -0.87
CD44-207ENST00000425428 STARD8Q92502 1023 aa9.62□□□□□ -0.87
CD44-207ENST00000425428 ZNF501Q96CX3 271 aaPredicted RBP9.62□□□□□ -0.87
CD44-207ENST00000425428 TM4SF19Q96DZ7 209 aa9.62□□□□□ -0.87
CD44-207ENST00000425428 F2RL3Q96RI0 385 aa9.62□□□□□ -0.87
CD44-207ENST00000425428 SERINC2Q96SA4 455 aa9.62□□□□□ -0.87
CD44-207ENST00000425428 CCT8L2Q96SF2 557 aa9.62□□□□□ -0.87
CD44-207ENST00000425428 ZBTB18Q99592 522 aa9.62□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms