RNA–Protein interactions for RNA: ENST00000417997.1

HMGB3P20-201, Transcript of high mobility group box 3 pseudogene 20, humanhuman

BASIC

Gene HMGB3P20, Length 600 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P20-201ENST00000417997 OIT3Q8WWZ8 545 aa3.72□□□□□ -1.81
HMGB3P20-201ENST00000417997 SMARCD2Q92925 531 aa3.72□□□□□ -1.81
HMGB3P20-201ENST00000417997 TBRG4Q969Z0 631 aaKnown RBP eCLIP3.72□□□□□ -1.81
HMGB3P20-201ENST00000417997 CENPTQ96BT3 561 aa3.72□□□□□ -1.81
HMGB3P20-201ENST00000417997 ZNF707Q96C28 371 aaPredicted RBP3.72□□□□□ -1.81
HMGB3P20-201ENST00000417997 CHMP6Q96FZ7 201 aa3.72□□□□□ -1.81
HMGB3P20-201ENST00000417997 VPS39Q96JC1 886 aa3.72□□□□□ -1.81
HMGB3P20-201ENST00000417997 ZNF479Q96JC4 524 aa3.72□□□□□ -1.81
HMGB3P20-201ENST00000417997 CCDC138Q96M89 665 aa3.72□□□□□ -1.81
HMGB3P20-201ENST00000417997 KLF6Q99612 283 aaPredicted RBP3.72□□□□□ -1.81
HMGB3P20-201ENST00000417997 FEM1AQ9BSK4 669 aa3.72□□□□□ -1.81
HMGB3P20-201ENST00000417997 KIFC1Q9BW19 673 aa3.72□□□□□ -1.81
HMGB3P20-201ENST00000417997 SF3B5Q9BWJ5 86 aaKnown RBP3.72□□□□□ -1.81
HMGB3P20-201ENST00000417997 MYLK2Q9H1R3 596 aa3.72□□□□□ -1.81
HMGB3P20-201ENST00000417997 CCDC68Q9H2F9 335 aa3.72□□□□□ -1.81
HMGB3P20-201ENST00000417997 RABEP2Q9H5N1 569 aa3.72□□□□□ -1.81
HMGB3P20-201ENST00000417997 ZDHHC6Q9H6R6 413 aa3.72□□□□□ -1.81
HMGB3P20-201ENST00000417997 ATP13A3Q9H7F0 1226 aa3.72□□□□□ -1.81
HMGB3P20-201ENST00000417997 UGT1A7Q9HAW7 530 aa3.72□□□□□ -1.81
HMGB3P20-201ENST00000417997 UGT1A10Q9HAW8 530 aa3.72□□□□□ -1.81
HMGB3P20-201ENST00000417997 UGT1A8Q9HAW9 530 aa3.72□□□□□ -1.81
HMGB3P20-201ENST00000417997 NOD2Q9HC29 1040 aa3.72□□□□□ -1.81
HMGB3P20-201ENST00000417997 CHRAC1Q9NRG0 131 aa3.72□□□□□ -1.81
HMGB3P20-201ENST00000417997 DUS2Q9NX74 493 aaKnown RBP3.72□□□□□ -1.81
HMGB3P20-201ENST00000417997 HACD3Q9P035 362 aa3.72□□□□□ -1.81
HMGB3P20-201ENST00000417997 ZKSCAN7Q9P0L1 754 aaPredicted RBP3.72□□□□□ -1.81
HMGB3P20-201ENST00000417997 LHX3Q9UBR4 397 aa3.72□□□□□ -1.81
HMGB3P20-201ENST00000417997 GGA2Q9UJY4 613 aa3.72□□□□□ -1.81
HMGB3P20-201ENST00000417997 CA14Q9ULX7 337 aa3.72□□□□□ -1.81
HMGB3P20-201ENST00000417997 CHKBQ9Y259 395 aa3.72□□□□□ -1.81
HMGB3P20-201ENST00000417997 PKP3Q9Y446 797 aa3.72□□□□□ -1.81
HMGB3P20-201ENST00000417997 DTNAQ9Y4J8 743 aa3.72□□□□□ -1.81
HMGB3P20-201ENST00000417997 RAI2Q9Y5P3 530 aa3.72□□□□□ -1.81
HMGB3P20-201ENST00000417997 PLXNA2O75051 1894 aa3.72□□□□□ -1.81
HMGB3P20-201ENST00000417997 MYOFQ9NZM1 2061 aa3.71□□□□□ -1.82
HMGB3P20-201ENST00000417997 ZCWPW2A0A1B0GU75 182 aa3.71□□□□□ -1.82
HMGB3P20-201ENST00000417997 LOC285095A0A1B0GVY8 99 aa3.71□□□□□ -1.82
HMGB3P20-201ENST00000417997 A0A1W2PQ67 120 aa3.71□□□□□ -1.82
HMGB3P20-201ENST00000417997 RPS10-NUDT3A0A1W2PQS6 291 aa3.71□□□□□ -1.82
HMGB3P20-201ENST00000417997 GMNCA6NCL1 334 aa3.71□□□□□ -1.82
HMGB3P20-201ENST00000417997 CXorf65A6NEN9 183 aa3.71□□□□□ -1.82
HMGB3P20-201ENST00000417997 EPOPA6NHQ4 379 aa3.71□□□□□ -1.82
HMGB3P20-201ENST00000417997 C2orf81A6NN90 581 aa3.71□□□□□ -1.82
HMGB3P20-201ENST00000417997 HEPACAM2A8MVW5 462 aa3.71□□□□□ -1.82
HMGB3P20-201ENST00000417997 FOXO6A8MYZ6 492 aa3.71□□□□□ -1.82
HMGB3P20-201ENST00000417997 TCP11X1B4DZS4 312 aa3.71□□□□□ -1.82
HMGB3P20-201ENST00000417997 GOLGA8TH3BQL2 631 aa3.71□□□□□ -1.82
HMGB3P20-201ENST00000417997 GTPBP1O00178 669 aaKnown RBP3.71□□□□□ -1.82
HMGB3P20-201ENST00000417997 PCDH17O14917 1159 aa3.71□□□□□ -1.82
HMGB3P20-201ENST00000417997 PIP5K1BO14986 540 aa3.71□□□□□ -1.82
HMGB3P20-201ENST00000417997 STX7O15400 261 aaKnown RBP3.71□□□□□ -1.82
HMGB3P20-201ENST00000417997 NKX2-8O15522 239 aa3.71□□□□□ -1.82
HMGB3P20-201ENST00000417997 SLC7A4O43246 635 aa3.71□□□□□ -1.82
HMGB3P20-201ENST00000417997 HOXC11O43248 304 aaPredicted RBP3.71□□□□□ -1.82
HMGB3P20-201ENST00000417997 SOCS5O75159 536 aa3.71□□□□□ -1.82
HMGB3P20-201ENST00000417997 PEX14O75381 377 aa3.71□□□□□ -1.82
HMGB3P20-201ENST00000417997 GJB3O75712 270 aa3.71□□□□□ -1.82
HMGB3P20-201ENST00000417997 RPP40O75818 363 aaKnown RBP3.71□□□□□ -1.82
HMGB3P20-201ENST00000417997 ZMPSTE24O75844 475 aa3.71□□□□□ -1.82
HMGB3P20-201ENST00000417997 PAPSS2O95340 614 aaPredicted RBP3.71□□□□□ -1.82
HMGB3P20-201ENST00000417997 PIGNO95427 931 aa3.71□□□□□ -1.82
HMGB3P20-201ENST00000417997 GLP2RO95838 553 aa3.71□□□□□ -1.82
HMGB3P20-201ENST00000417997 GSRP00390 522 aa3.71□□□□□ -1.82
HMGB3P20-201ENST00000417997 PENKP01210 267 aaPredicted RBP3.71□□□□□ -1.82
HMGB3P20-201ENST00000417997 EPOP01588 193 aa3.71□□□□□ -1.82
HMGB3P20-201ENST00000417997 WNT1P04628 370 aa3.71□□□□□ -1.82
HMGB3P20-201ENST00000417997 ATP5BP06576 529 aaKnown RBP3.71□□□□□ -1.82
HMGB3P20-201ENST00000417997 NGFRP08138 427 aa3.71□□□□□ -1.82
HMGB3P20-201ENST00000417997 ALDOCP09972 364 aaKnown RBP3.71□□□□□ -1.82
HMGB3P20-201ENST00000417997 PIRTP0C851 137 aa3.71□□□□□ -1.82
HMGB3P20-201ENST00000417997 SRCP12931 536 aa3.71□□□□□ -1.82
HMGB3P20-201ENST00000417997 STMN1P16949 149 aa3.71□□□□□ -1.82
HMGB3P20-201ENST00000417997 HOXB8P17481 243 aaPredicted RBP3.71□□□□□ -1.82
HMGB3P20-201ENST00000417997 CTPS1P17812 591 aa3.71□□□□□ -1.82
HMGB3P20-201ENST00000417997 OGNP20774 298 aaKnown RBP3.71□□□□□ -1.82
HMGB3P20-201ENST00000417997 SAT1P21673 171 aa3.71□□□□□ -1.82
HMGB3P20-201ENST00000417997 TYK2P29597 1187 aa3.71□□□□□ -1.82
HMGB3P20-201ENST00000417997 HLA-FP30511 346 aa3.71□□□□□ -1.82
HMGB3P20-201ENST00000417997 GRK5P34947 590 aa3.71□□□□□ -1.82
HMGB3P20-201ENST00000417997 RPA3P35244 121 aaPredicted RBP3.71□□□□□ -1.82
HMGB3P20-201ENST00000417997 HADHAP40939 763 aa3.71□□□□□ -1.82
HMGB3P20-201ENST00000417997 MTHFRP42898 656 aa3.71□□□□□ -1.82
HMGB3P20-201ENST00000417997 SLC1A2P43004 574 aa3.71□□□□□ -1.82
HMGB3P20-201ENST00000417997 CCT5P48643 541 aa3.71□□□□□ -1.82
HMGB3P20-201ENST00000417997 HSPA7P48741 367 aa3.71□□□□□ -1.82
HMGB3P20-201ENST00000417997 STK19P49842 368 aaPredicted RBP3.71□□□□□ -1.82
HMGB3P20-201ENST00000417997 CLCN5P51795 746 aa3.71□□□□□ -1.82
HMGB3P20-201ENST00000417997 CCNHP51946 323 aaPredicted RBP3.71□□□□□ -1.82
HMGB3P20-201ENST00000417997 PLK1P53350 603 aa3.71□□□□□ -1.82
HMGB3P20-201ENST00000417997 SLC18A1P54219 525 aa3.71□□□□□ -1.82
HMGB3P20-201ENST00000417997 ALDH18A1P54886 795 aaKnown RBP3.71□□□□□ -1.82
HMGB3P20-201ENST00000417997 TAS2R50P59544 299 aa3.71□□□□□ -1.82
HMGB3P20-201ENST00000417997 RPL26P61254 145 aaKnown RBP3.71□□□□□ -1.82
HMGB3P20-201ENST00000417997 MPP1Q00013 466 aa3.71□□□□□ -1.82
HMGB3P20-201ENST00000417997 ECT2LQ008S8 904 aa3.71□□□□□ -1.82
HMGB3P20-201ENST00000417997 SLC18A2Q05940 514 aa3.71□□□□□ -1.82
HMGB3P20-201ENST00000417997 KDSRQ06136 332 aa3.71□□□□□ -1.82
HMGB3P20-201ENST00000417997 SLC20A2Q08357 652 aa3.71□□□□□ -1.82
HMGB3P20-201ENST00000417997 PMPCAQ10713 525 aa3.71□□□□□ -1.82
HMGB3P20-201ENST00000417997 HYAL1Q12794 435 aa3.71□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 73.8 ms