RNA–Protein interactions for RNA: ENST00000413725.5

SF1-206, Transcript of splicing factor 1, human

TSL 2

Gene SF1, Length 843 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SF1-206	ENST00000413725		A0A1B0GTL3	188 aa		12.51	□□□□□ -0.41
SF1-206	ENST00000413725	LRIT2	A6NDA9	550 aa		12.51	□□□□□ -0.41
SF1-206	ENST00000413725		C9J4A7	227 aa		12.51	□□□□□ -0.41
SF1-206	ENST00000413725	FOXE1	O00358	373 aa	Predicted RBP	12.51	□□□□□ -0.41
SF1-206	ENST00000413725	UBFD1	O14562	309 aa	Known RBP	12.51	□□□□□ -0.41
SF1-206	ENST00000413725	HSPA4L	O95757	839 aa		12.51	□□□□□ -0.41
SF1-206	ENST00000413725	ZNF888	P0CJ79	500 aa	Predicted RBP	12.51	□□□□□ -0.41
SF1-206	ENST00000413725	CHN1	P15882	459 aa		12.51	□□□□□ -0.41
SF1-206	ENST00000413725	ZNF10	P21506	573 aa	Predicted RBP	12.51	□□□□□ -0.41
SF1-206	ENST00000413725	RORA	P35398	523 aa		12.51	□□□□□ -0.41
SF1-206	ENST00000413725	AVPR1B	P47901	424 aa		12.51	□□□□□ -0.41
SF1-206	ENST00000413725	ABCE1	P61221	599 aa	Known RBP	12.51	□□□□□ -0.41
SF1-206	ENST00000413725	DCD	P81605	110 aa	Known RBP	12.51	□□□□□ -0.41
SF1-206	ENST00000413725	ZNF33B	Q06732	778 aa		12.51	□□□□□ -0.41
SF1-206	ENST00000413725	STX3	Q13277	289 aa		12.51	□□□□□ -0.41
SF1-206	ENST00000413725	TMEM35A	Q53FP2	167 aa		12.51	□□□□□ -0.41
SF1-206	ENST00000413725	ARL13A	Q5H913	290 aa	Predicted RBP	12.51	□□□□□ -0.41
SF1-206	ENST00000413725	C1orf189	Q5VU69	101 aa		12.51	□□□□□ -0.41
SF1-206	ENST00000413725	ATG16L1	Q676U5	607 aa		12.51	□□□□□ -0.41
SF1-206	ENST00000413725	ADNP2	Q6IQ32	1131 aa		12.51	□□□□□ -0.41
SF1-206	ENST00000413725	TRIM40	Q6P9F5	258 aa		12.51	□□□□□ -0.41
SF1-206	ENST00000413725	CHSY3	Q70JA7	882 aa		12.51	□□□□□ -0.41
SF1-206	ENST00000413725	CACNA2D3	Q8IZS8	1091 aa		12.51	□□□□□ -0.41
SF1-206	ENST00000413725	ARHGEF39	Q8N4T4	335 aa		12.51	□□□□□ -0.41
SF1-206	ENST00000413725	ARFGAP2	Q8N6H7	521 aa		12.51	□□□□□ -0.41
SF1-206	ENST00000413725	IL22RA1	Q8N6P7	574 aa		12.51	□□□□□ -0.41
SF1-206	ENST00000413725	SLC38A9	Q8NBW4	561 aa		12.51	□□□□□ -0.41
SF1-206	ENST00000413725	ZNF248	Q8NDW4	579 aa		12.51	□□□□□ -0.41
SF1-206	ENST00000413725	SRFBP1	Q8NEF9	429 aa	Known RBP	12.51	□□□□□ -0.41
SF1-206	ENST00000413725	OR6Y1	Q8NGX8	325 aa		12.51	□□□□□ -0.41
SF1-206	ENST00000413725	SNIP1	Q8TAD8	396 aa	Known RBP	12.51	□□□□□ -0.41
SF1-206	ENST00000413725	DYDC1	Q8WWB3	177 aa		12.51	□□□□□ -0.41
SF1-206	ENST00000413725	SELENOM	Q8WWX9	145 aa		12.51	□□□□□ -0.41
SF1-206	ENST00000413725	MR1	Q95460	341 aa		12.51	□□□□□ -0.41
SF1-206	ENST00000413725	GBP5	Q96PP8	586 aa		12.51	□□□□□ -0.41
SF1-206	ENST00000413725	C17orf62	Q9BQA9	187 aa		12.51	□□□□□ -0.41
SF1-206	ENST00000413725	TMEM121B	Q9BXQ6	578 aa	Predicted RBP	12.51	□□□□□ -0.41
SF1-206	ENST00000413725	MS4A8	Q9BY19	250 aa		12.51	□□□□□ -0.41
SF1-206	ENST00000413725	SHCBP1L	Q9BZQ2	653 aa		12.51	□□□□□ -0.41
SF1-206	ENST00000413725	REXO4	Q9GZR2	422 aa	Known RBP	12.51	□□□□□ -0.41
SF1-206	ENST00000413725	LHX9	Q9NQ69	397 aa		12.51	□□□□□ -0.41
SF1-206	ENST00000413725	INTS9	Q9NV88	658 aa	Known RBP	12.51	□□□□□ -0.41
SF1-206	ENST00000413725	PPT2	Q9UMR5	302 aa		12.51	□□□□□ -0.41
SF1-206	ENST00000413725	FREM2	Q5SZK8	3169 aa		12.51	□□□□□ -0.41
SF1-206	ENST00000413725	ACACB	O00763	2458 aa		12.51	□□□□□ -0.41
SF1-206	ENST00000413725	FRY	Q5TBA9	3013 aa		12.5	□□□□□ -0.41
SF1-206	ENST00000413725	TEX51	A0A1B0GUA7	166 aa		12.5	□□□□□ -0.41
SF1-206	ENST00000413725	TMEM8B	A6NDV4	472 aa		12.5	□□□□□ -0.41
SF1-206	ENST00000413725	MAGEB17	A8MXT2	336 aa		12.5	□□□□□ -0.41
SF1-206	ENST00000413725	C1QTNF9B	B2RNN3	333 aa		12.5	□□□□□ -0.41
SF1-206	ENST00000413725	MANBA	O00462	879 aa		12.5	□□□□□ -0.41
SF1-206	ENST00000413725	AZIN1	O14977	448 aa		12.5	□□□□□ -0.41
SF1-206	ENST00000413725	ERI3	O43414	337 aa	Known RBP	12.5	□□□□□ -0.41
SF1-206	ENST00000413725	ULK1	O75385	1050 aa		12.5	□□□□□ -0.41
SF1-206	ENST00000413725	MED26	O95402	600 aa		12.5	□□□□□ -0.41
SF1-206	ENST00000413725	NSA2	O95478	260 aa	Known RBP	12.5	□□□□□ -0.41
SF1-206	ENST00000413725	CHEK2	O96017	543 aa		12.5	□□□□□ -0.41
SF1-206	ENST00000413725	TGFB1	P01137	390 aa		12.5	□□□□□ -0.41
SF1-206	ENST00000413725	CHRNG	P07510	517 aa		12.5	□□□□□ -0.41
SF1-206	ENST00000413725	C1QTNF9	P0C862	333 aa		12.5	□□□□□ -0.41
SF1-206	ENST00000413725	UROS	P10746	265 aa		12.5	□□□□□ -0.41
SF1-206	ENST00000413725	HSD3B1	P14060	373 aa		12.5	□□□□□ -0.41
SF1-206	ENST00000413725	ALOX12	P18054	663 aa		12.5	□□□□□ -0.41
SF1-206	ENST00000413725	IL1RN	P18510	177 aa		12.5	□□□□□ -0.41
SF1-206	ENST00000413725	PTX3	P26022	381 aa	Predicted RBP	12.5	□□□□□ -0.41
SF1-206	ENST00000413725	HSD3B2	P26439	372 aa		12.5	□□□□□ -0.41
SF1-206	ENST00000413725	HNRNPH1	P31943	449 aa	Known RBP	12.5	□□□□□ -0.41
SF1-206	ENST00000413725	SLC1A6	P48664	564 aa		12.5	□□□□□ -0.41
SF1-206	ENST00000413725	NEK2	P51955	445 aa		12.5	□□□□□ -0.41
SF1-206	ENST00000413725	RAP1GDS1	P52306	607 aa		12.5	□□□□□ -0.41
SF1-206	ENST00000413725	RPS13	P62277	151 aa	Known RBP	12.5	□□□□□ -0.41
SF1-206	ENST00000413725	HYAL2	Q12891	473 aa		12.5	□□□□□ -0.41
SF1-206	ENST00000413725	ADPRM	Q3LIE5	342 aa		12.5	□□□□□ -0.41
SF1-206	ENST00000413725	SGO1	Q5FBB7	561 aa		12.5	□□□□□ -0.41
SF1-206	ENST00000413725	ARHGAP40	Q5TG30	622 aa		12.5	□□□□□ -0.41
SF1-206	ENST00000413725	KHDRBS2	Q5VWX1	349 aa	Known RBP	12.5	□□□□□ -0.41
SF1-206	ENST00000413725	TIPARP	Q7Z3E1	657 aa	Known RBP	12.5	□□□□□ -0.41
SF1-206	ENST00000413725	DTX1	Q86Y01	620 aa		12.5	□□□□□ -0.41
SF1-206	ENST00000413725	KIRREL3	Q8IZU9	778 aa		12.5	□□□□□ -0.41
SF1-206	ENST00000413725	AFAP1L2	Q8N4X5	818 aa		12.5	□□□□□ -0.41
SF1-206	ENST00000413725	METTL27	Q8N6F8	245 aa	Predicted RBP	12.5	□□□□□ -0.41
SF1-206	ENST00000413725	OR2L5	Q8NG80	312 aa		12.5	□□□□□ -0.41
SF1-206	ENST00000413725	UTP15	Q8TED0	518 aa	Known RBP	12.5	□□□□□ -0.41
SF1-206	ENST00000413725	KCNE4	Q8WWG9	221 aa		12.5	□□□□□ -0.41
SF1-206	ENST00000413725	COL26A1	Q96A83	441 aa		12.5	□□□□□ -0.41
SF1-206	ENST00000413725	KIAA1143	Q96AT1	154 aa	Predicted RBP	12.5	□□□□□ -0.41
SF1-206	ENST00000413725	MTFMT	Q96DP5	389 aa	Known RBP	12.5	□□□□□ -0.41
SF1-206	ENST00000413725	MS4A6E	Q96DS6	147 aa		12.5	□□□□□ -0.41
SF1-206	ENST00000413725	MMAB	Q96EY8	250 aa	Predicted RBP	12.5	□□□□□ -0.41
SF1-206	ENST00000413725	FAR2	Q96K12	515 aa		12.5	□□□□□ -0.41
SF1-206	ENST00000413725	KCNA7	Q96RP8	456 aa		12.5	□□□□□ -0.41
SF1-206	ENST00000413725	SERPINI1	Q99574	410 aa		12.5	□□□□□ -0.41
SF1-206	ENST00000413725	COPS7B	Q9H9Q2	264 aa	Predicted RBP	12.5	□□□□□ -0.41
SF1-206	ENST00000413725	BRF2	Q9HAW0	419 aa		12.5	□□□□□ -0.41
SF1-206	ENST00000413725	ZNF304	Q9HCX3	659 aa		12.5	□□□□□ -0.41
SF1-206	ENST00000413725	WDR70	Q9NW82	654 aa		12.5	□□□□□ -0.41
SF1-206	ENST00000413725	NMRK1	Q9NWW6	199 aa		12.5	□□□□□ -0.41
SF1-206	ENST00000413725	PSD3	Q9NYI0	1048 aa		12.5	□□□□□ -0.41
SF1-206	ENST00000413725	GPN3	Q9UHW5	284 aa	Predicted RBP	12.5	□□□□□ -0.41
SF1-206	ENST00000413725	MRPS2	Q9Y399	296 aa	Known RBP	12.5	□□□□□ -0.41

Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms