RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 CLCA3PQ9Y6N3 262 aa9.91□□□□□ -0.82
COL6A3-205ENST00000392004 CHD7Q9P2D1 2997 aa9.9□□□□□ -0.82
COL6A3-205ENST00000392004 A0A0A6YYC8 382 aaPredicted RBP9.9□□□□□ -0.82
COL6A3-205ENST00000392004 MROH6A6NGR9 719 aa9.9□□□□□ -0.82
COL6A3-205ENST00000392004 OR5K4A6NMS3 321 aa9.9□□□□□ -0.82
COL6A3-205ENST00000392004 I3L1I5 382 aaPredicted RBP9.9□□□□□ -0.82
COL6A3-205ENST00000392004 IMPDH1P20839 514 aa9.9□□□□□ -0.82
COL6A3-205ENST00000392004 BUD31P41223 144 aaPredicted RBP9.9□□□□□ -0.82
COL6A3-205ENST00000392004 HTR6P50406 440 aa9.9□□□□□ -0.82
COL6A3-205ENST00000392004 STXBP1P61764 594 aaKnown RBP9.9□□□□□ -0.82
COL6A3-205ENST00000392004 CDKL1Q00532 357 aa9.9□□□□□ -0.82
COL6A3-205ENST00000392004 APOFQ13790 326 aa9.9□□□□□ -0.82
COL6A3-205ENST00000392004 FAM174BQ3ZCQ3 159 aa9.9□□□□□ -0.82
COL6A3-205ENST00000392004 HENMT1Q5T8I9 393 aaKnown RBP9.9□□□□□ -0.82
COL6A3-205ENST00000392004 CPTPQ5TA50 214 aa9.9□□□□□ -0.82
COL6A3-205ENST00000392004 CENPLQ8N0S6 344 aaPredicted RBP9.9□□□□□ -0.82
COL6A3-205ENST00000392004 ZNF480Q8WV37 535 aa9.9□□□□□ -0.82
COL6A3-205ENST00000392004 NEIL2Q969S2 332 aa9.9□□□□□ -0.82
COL6A3-205ENST00000392004 MSANTD3Q96H12 275 aa9.9□□□□□ -0.82
COL6A3-205ENST00000392004 PTCHD1Q96NR3 888 aa9.9□□□□□ -0.82
COL6A3-205ENST00000392004 BIRC8Q96P09 236 aa9.9□□□□□ -0.82
COL6A3-205ENST00000392004 C1QTNF2Q9BXJ5 285 aa9.9□□□□□ -0.82
COL6A3-205ENST00000392004 MRM3Q9HC36 420 aaKnown RBP9.9□□□□□ -0.82
COL6A3-205ENST00000392004 OXSMQ9NWU1 459 aa9.9□□□□□ -0.82
COL6A3-205ENST00000392004 EHD3Q9NZN3 535 aa9.9□□□□□ -0.82
COL6A3-205ENST00000392004 RAPGEFL1Q9UHV5 662 aa9.9□□□□□ -0.82
COL6A3-205ENST00000392004 RIMS3Q9UJD0 308 aa9.9□□□□□ -0.82
COL6A3-205ENST00000392004 EMCNQ9ULC0 261 aa9.9□□□□□ -0.82
COL6A3-205ENST00000392004 A0A087WXM4 84 aa9.9□□□□□ -0.82
COL6A3-205ENST00000392004 GUCY1B2O75343 617 aa9.9□□□□□ -0.82
COL6A3-205ENST00000392004 RBMS1P29558 406 aaKnown RBP9.9□□□□□ -0.82
COL6A3-205ENST00000392004 ENTPD1P49961 510 aa9.9□□□□□ -0.82
COL6A3-205ENST00000392004 TAS2R50P59544 299 aa9.9□□□□□ -0.82
COL6A3-205ENST00000392004 ALDH6A1Q02252 535 aaKnown RBP9.9□□□□□ -0.82
COL6A3-205ENST00000392004 KCTD21Q4G0X4 260 aa9.9□□□□□ -0.82
COL6A3-205ENST00000392004 TNFAIP8L2Q6P589 184 aaPredicted RBP9.9□□□□□ -0.82
COL6A3-205ENST00000392004 TTC33Q6PID6 262 aaPredicted RBP9.9□□□□□ -0.82
COL6A3-205ENST00000392004 ZNF786Q8N393 782 aa9.9□□□□□ -0.82
COL6A3-205ENST00000392004 CSNK1A1LQ8N752 337 aa9.9□□□□□ -0.82
COL6A3-205ENST00000392004 AVL9Q8NBF6 648 aa9.9□□□□□ -0.82
COL6A3-205ENST00000392004 OR52B2Q96RD2 323 aa9.9□□□□□ -0.82
COL6A3-205ENST00000392004 CLK4Q9HAZ1 481 aaKnown RBP9.9□□□□□ -0.82
COL6A3-205ENST00000392004 ACTR10Q9NZ32 417 aa9.9□□□□□ -0.82
COL6A3-205ENST00000392004 CACNA1CQ13936 2221 aa9.9□□□□□ -0.82
COL6A3-205ENST00000392004 CEP295Q9C0D2 2601 aa9.9□□□□□ -0.82
COL6A3-205ENST00000392004 HMX2A2RU54 273 aa9.9□□□□□ -0.83
COL6A3-205ENST00000392004 MAGEB17A8MXT2 336 aa9.9□□□□□ -0.83
COL6A3-205ENST00000392004 BOLA2-SMG1P6H3BVE0 249 aa9.9□□□□□ -0.83
COL6A3-205ENST00000392004 TRIM38O00635 465 aa9.9□□□□□ -0.83
COL6A3-205ENST00000392004 TPD52L2O43399 206 aaKnown RBP9.9□□□□□ -0.83
COL6A3-205ENST00000392004 PLRG1O43660 514 aaKnown RBP9.9□□□□□ -0.83
COL6A3-205ENST00000392004 B3GALT2O43825 422 aa9.9□□□□□ -0.83
COL6A3-205ENST00000392004 UBXN7O94888 489 aa9.9□□□□□ -0.83
COL6A3-205ENST00000392004 F10P00742 488 aa9.9□□□□□ -0.83
COL6A3-205ENST00000392004 FDXRP22570 491 aa9.9□□□□□ -0.83
COL6A3-205ENST00000392004 YBX1P67809 324 aaKnown RBP9.9□□□□□ -0.83
COL6A3-205ENST00000392004 FOXC1Q12948 553 aa9.9□□□□□ -0.83
COL6A3-205ENST00000392004 PTGR1Q14914 329 aa9.9□□□□□ -0.83
COL6A3-205ENST00000392004 DUOXA1Q1HG43 343 aa9.9□□□□□ -0.83
COL6A3-205ENST00000392004 ZBTB49Q6ZSB9 765 aa9.9□□□□□ -0.83
COL6A3-205ENST00000392004 ARL14Q8N4G2 192 aa9.9□□□□□ -0.83
COL6A3-205ENST00000392004 OR2L2Q8NH16 312 aa9.9□□□□□ -0.83
COL6A3-205ENST00000392004 USP7Q93009 1102 aa9.9□□□□□ -0.83
COL6A3-205ENST00000392004 COX4I2Q96KJ9 171 aa9.9□□□□□ -0.83
COL6A3-205ENST00000392004 STRADBQ9C0K7 418 aa9.9□□□□□ -0.83
COL6A3-205ENST00000392004 VPS29Q9UBQ0 182 aa9.9□□□□□ -0.83
COL6A3-205ENST00000392004 VTI1BQ9UEU0 232 aa9.9□□□□□ -0.83
COL6A3-205ENST00000392004 MBD1Q9UIS9 605 aaPredicted RBP9.9□□□□□ -0.83
COL6A3-205ENST00000392004 PCDHGB5Q9Y5G0 923 aa9.9□□□□□ -0.83
COL6A3-205ENST00000392004 MYO18BQ8IUG5 2567 aa9.9□□□□□ -0.83
COL6A3-205ENST00000392004 AKAP6Q13023 2319 aa9.89□□□□□ -0.83
COL6A3-205ENST00000392004 CDH23Q9H251 3354 aa9.89□□□□□ -0.83
COL6A3-205ENST00000392004 ANHXE9PGG2 379 aa9.89□□□□□ -0.83
COL6A3-205ENST00000392004 C1QAP02745 245 aa9.89□□□□□ -0.83
COL6A3-205ENST00000392004 OCM2P0CE71 109 aa9.89□□□□□ -0.83
COL6A3-205ENST00000392004 OCMP0CE72 109 aaPredicted RBP9.89□□□□□ -0.83
COL6A3-205ENST00000392004 NR2F1P10589 423 aa9.89□□□□□ -0.83
COL6A3-205ENST00000392004 PTNP21246 168 aa9.89□□□□□ -0.83
COL6A3-205ENST00000392004 AGXTP21549 392 aa9.89□□□□□ -0.83
COL6A3-205ENST00000392004 POU1F1P28069 291 aa9.89□□□□□ -0.83
COL6A3-205ENST00000392004 TAS2R38P59533 333 aa9.89□□□□□ -0.83
COL6A3-205ENST00000392004 GRIK2Q13002 908 aa9.89□□□□□ -0.83
COL6A3-205ENST00000392004 LSM12Q3MHD2 195 aaKnown RBP9.89□□□□□ -0.83
COL6A3-205ENST00000392004 ATAD3BQ5T9A4 648 aa9.89□□□□□ -0.83
COL6A3-205ENST00000392004 MFSD2AQ8NA29 543 aa9.89□□□□□ -0.83
COL6A3-205ENST00000392004 COQ10BQ9H8M1 238 aa9.89□□□□□ -0.83
COL6A3-205ENST00000392004 SELENONQ9NZV5 590 aa9.89□□□□□ -0.83
COL6A3-205ENST00000392004 IFT80Q9P2H3 777 aaPredicted RBP9.89□□□□□ -0.83
COL6A3-205ENST00000392004 PCDHB3Q9Y5E6 796 aa9.89□□□□□ -0.83
COL6A3-205ENST00000392004 ACACBO00763 2458 aa9.89□□□□□ -0.83
COL6A3-205ENST00000392004 BCAS2O75934 225 aaPredicted RBP9.89□□□□□ -0.83
COL6A3-205ENST00000392004 GSTM1P09488 218 aa9.89□□□□□ -0.83
COL6A3-205ENST00000392004 ENGP17813 658 aa9.89□□□□□ -0.83
COL6A3-205ENST00000392004 STT3AP46977 705 aa9.89□□□□□ -0.83
COL6A3-205ENST00000392004 AVPR1BP47901 424 aa9.89□□□□□ -0.83
COL6A3-205ENST00000392004 KCNC1P48547 511 aa9.89□□□□□ -0.83
COL6A3-205ENST00000392004 CD97P48960 835 aa9.89□□□□□ -0.83
COL6A3-205ENST00000392004 DIO3P55073 304 aa9.89□□□□□ -0.83
COL6A3-205ENST00000392004 RALGDSQ12967 914 aa9.89□□□□□ -0.83
COL6A3-205ENST00000392004 ZNF423Q2M1K9 1284 aa9.89□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 58.9 ms