RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 SNAP29O95721 258 aa11.06□□□□□ -0.64
PTPRF-203ENST00000372407 CHRM1P11229 460 aaPredicted RBP11.06□□□□□ -0.64
PTPRF-203ENST00000372407 PROZP22891 400 aa11.06□□□□□ -0.64
PTPRF-203ENST00000372407 F8A1P23610 371 aa11.06□□□□□ -0.64
PTPRF-203ENST00000372407 SEC13P55735 322 aa11.06□□□□□ -0.64
PTPRF-203ENST00000372407 GHRHRQ02643 423 aa11.06□□□□□ -0.64
PTPRF-203ENST00000372407 ADAM15Q13444 863 aa11.06□□□□□ -0.64
PTPRF-203ENST00000372407 ENPP2Q13822 863 aa11.06□□□□□ -0.64
PTPRF-203ENST00000372407 C1orf220Q5T0J3 134 aa11.06□□□□□ -0.64
PTPRF-203ENST00000372407 FAM72AQ5TYM5 149 aa11.06□□□□□ -0.64
PTPRF-203ENST00000372407 FAM72DQ6L9T8 149 aa11.06□□□□□ -0.64
PTPRF-203ENST00000372407 NOXRED1Q6NXP6 359 aa11.06□□□□□ -0.64
PTPRF-203ENST00000372407 SYCE2Q6PIF2 218 aa11.06□□□□□ -0.64
PTPRF-203ENST00000372407 ABHD13Q7L211 337 aa11.06□□□□□ -0.64
PTPRF-203ENST00000372407 FAM72BQ86X60 149 aa11.06□□□□□ -0.64
PTPRF-203ENST00000372407 GAS2L1Q99501 681 aaPredicted RBP11.06□□□□□ -0.64
PTPRF-203ENST00000372407 PCDHGB6Q9Y5F9 930 aa11.06□□□□□ -0.64
PTPRF-203ENST00000372407 CHP2O43745 196 aa11.05□□□□□ -0.64
PTPRF-203ENST00000372407 APOC1P02654 83 aa11.05□□□□□ -0.64
PTPRF-203ENST00000372407 CXCR1P25024 350 aa11.05□□□□□ -0.64
PTPRF-203ENST00000372407 RPS3AP61247 264 aaKnown RBP11.05□□□□□ -0.64
PTPRF-203ENST00000372407 CD83Q01151 205 aa11.05□□□□□ -0.64
PTPRF-203ENST00000372407 RING1Q06587 406 aa11.05□□□□□ -0.64
PTPRF-203ENST00000372407 CEP68Q76N32 757 aa11.05□□□□□ -0.64
PTPRF-203ENST00000372407 TRIM74Q86UV6 250 aa11.05□□□□□ -0.64
PTPRF-203ENST00000372407 TRIM73Q86UV7 250 aa11.05□□□□□ -0.64
PTPRF-203ENST00000372407 GOLM1Q8NBJ4 401 aa11.05□□□□□ -0.64
PTPRF-203ENST00000372407 OR4K1Q8NGD4 311 aa11.05□□□□□ -0.64
PTPRF-203ENST00000372407 OR9A1PQ8NGU1 263 aa11.05□□□□□ -0.64
PTPRF-203ENST00000372407 OR2AJ1Q8NGZ0 328 aa11.05□□□□□ -0.64
PTPRF-203ENST00000372407 CYB5D2Q8WUJ1 264 aa11.05□□□□□ -0.64
PTPRF-203ENST00000372407 NR4A3Q92570 626 aa11.05□□□□□ -0.64
PTPRF-203ENST00000372407 ISOC1Q96CN7 298 aa11.05□□□□□ -0.64
PTPRF-203ENST00000372407 BARD1Q99728 777 aaKnown RBP11.05□□□□□ -0.64
PTPRF-203ENST00000372407 C12orf4Q9NQ89 552 aa11.05□□□□□ -0.64
PTPRF-203ENST00000372407 MGAT4AQ9UM21 535 aa11.05□□□□□ -0.64
PTPRF-203ENST00000372407 TJP1Q07157 1748 aa11.05□□□□□ -0.64
PTPRF-203ENST00000372407 C6orf47O95873 294 aa11.05□□□□□ -0.64
PTPRF-203ENST00000372407 GBAP04062 536 aa11.05□□□□□ -0.64
PTPRF-203ENST00000372407 GLDCP23378 1020 aa11.05□□□□□ -0.64
PTPRF-203ENST00000372407 KDELR2P33947 212 aa11.05□□□□□ -0.64
PTPRF-203ENST00000372407 SLC11A1P49279 550 aa11.05□□□□□ -0.64
PTPRF-203ENST00000372407 RAB8AP61006 207 aa11.05□□□□□ -0.64
PTPRF-203ENST00000372407 GRSF1Q12849 480 aaKnown RBP eCLIP11.05□□□□□ -0.641e-18■■■■□ 22.3
PTPRF-203ENST00000372407 KCNC3Q14003 757 aa11.05□□□□□ -0.64
PTPRF-203ENST00000372407 PLEKHS1Q5SXH7 462 aa11.05□□□□□ -0.64
PTPRF-203ENST00000372407 GHDCQ8N2G8 530 aa11.05□□□□□ -0.64
PTPRF-203ENST00000372407 ZNF527Q8NB42 609 aa11.05□□□□□ -0.64
PTPRF-203ENST00000372407 AUTS2Q8WXX7 1259 aa11.05□□□□□ -0.64
PTPRF-203ENST00000372407 SIPA1Q96FS4 1042 aa11.05□□□□□ -0.64
PTPRF-203ENST00000372407 TMEM80Q96HE8 168 aa11.05□□□□□ -0.64
PTPRF-203ENST00000372407 FRMD6Q96NE9 622 aa11.05□□□□□ -0.64
PTPRF-203ENST00000372407 SLC2A13Q96QE2 648 aa11.05□□□□□ -0.64
PTPRF-203ENST00000372407 CENPMQ9NSP4 180 aa11.05□□□□□ -0.64
PTPRF-203ENST00000372407 MEMO1Q9Y316 297 aa11.05□□□□□ -0.64
PTPRF-203ENST00000372407 WDR45Q9Y484 360 aa11.05□□□□□ -0.64
PTPRF-203ENST00000372407 CFAP20Q9Y6A4 193 aaKnown RBP11.05□□□□□ -0.64
PTPRF-203ENST00000372407 KAT7O95251 611 aa11.05□□□□□ -0.64
PTPRF-203ENST00000372407 ITGBL1O95965 494 aaPredicted RBP11.05□□□□□ -0.64
PTPRF-203ENST00000372407 PRH1P02810 166 aa11.05□□□□□ -0.64
PTPRF-203ENST00000372407 FPGSQ05932 587 aa11.05□□□□□ -0.64
PTPRF-203ENST00000372407 PCBP2Q15366 365 aaKnown RBP eCLIP11.05□□□□□ -0.649e-9■■■■■ 31
PTPRF-203ENST00000372407 VMACQ2NL98 169 aa11.05□□□□□ -0.64
PTPRF-203ENST00000372407 EIF5AL1Q6IS14 154 aaKnown RBP11.05□□□□□ -0.64
PTPRF-203ENST00000372407 ALKBH2Q6NS38 261 aa11.05□□□□□ -0.64
PTPRF-203ENST00000372407 GALNT7Q86SF2 657 aa11.05□□□□□ -0.64
PTPRF-203ENST00000372407 TMEM17Q86X19 198 aa11.05□□□□□ -0.64
PTPRF-203ENST00000372407 GRHL3Q8TE85 626 aa11.05□□□□□ -0.64
PTPRF-203ENST00000372407 SLC25A36Q96CQ1 311 aa11.05□□□□□ -0.64
PTPRF-203ENST00000372407 FUZQ9BT04 418 aa11.05□□□□□ -0.64
PTPRF-203ENST00000372407 Q9N2J8 555 aa11.05□□□□□ -0.64
PTPRF-203ENST00000372407 DNAJC27Q9NZQ0 273 aa11.05□□□□□ -0.64
PTPRF-203ENST00000372407 MYH2Q9UKX2 1941 aa11.05□□□□□ -0.64
PTPRF-203ENST00000372407 C5orf51A6NDU8 294 aa11.05□□□□□ -0.64
PTPRF-203ENST00000372407 CAPN5O15484 640 aaPredicted RBP11.05□□□□□ -0.64
PTPRF-203ENST00000372407 ADH5P11766 374 aa11.05□□□□□ -0.64
PTPRF-203ENST00000372407 CD1DP15813 335 aa11.05□□□□□ -0.64
PTPRF-203ENST00000372407 EDNRAP25101 427 aa11.05□□□□□ -0.64
PTPRF-203ENST00000372407 SLC3A1Q07837 685 aa11.05□□□□□ -0.64
PTPRF-203ENST00000372407 NFATC2Q13469 925 aa11.05□□□□□ -0.64
PTPRF-203ENST00000372407 DSG2Q14126 1118 aa11.05□□□□□ -0.64
PTPRF-203ENST00000372407 NIPAL1Q6NVV3 410 aa11.05□□□□□ -0.64
PTPRF-203ENST00000372407 SYVN1Q86TM6 617 aa11.05□□□□□ -0.64
PTPRF-203ENST00000372407 MINDY1Q8N5J2 469 aa11.05□□□□□ -0.64
PTPRF-203ENST00000372407 ZNF615Q8N8J6 731 aa11.05□□□□□ -0.64
PTPRF-203ENST00000372407 ZNF548Q8NEK5 533 aaPredicted RBP11.05□□□□□ -0.64
PTPRF-203ENST00000372407 PROKR2Q8NFJ6 384 aa11.05□□□□□ -0.64
PTPRF-203ENST00000372407 TRIB2Q92519 343 aa11.05□□□□□ -0.64
PTPRF-203ENST00000372407 PCYT2Q99447 389 aa11.05□□□□□ -0.64
PTPRF-203ENST00000372407 EPYCQ99645 322 aa11.05□□□□□ -0.64
PTPRF-203ENST00000372407 TMED9Q9BVK6 235 aa11.05□□□□□ -0.64
PTPRF-203ENST00000372407 REEP4Q9H6H4 257 aa11.05□□□□□ -0.64
PTPRF-203ENST00000372407 BRD7Q9NPI1 651 aa11.05□□□□□ -0.64
PTPRF-203ENST00000372407 UCKL1Q9NWZ5 548 aa11.05□□□□□ -0.64
PTPRF-203ENST00000372407 HCN3Q9P1Z3 774 aa11.05□□□□□ -0.64
PTPRF-203ENST00000372407 PCDHB3Q9Y5E6 796 aa11.05□□□□□ -0.64
PTPRF-203ENST00000372407 A0A096LPI6 279 aa11.04□□□□□ -0.64
PTPRF-203ENST00000372407 A0A0D9SEW6 157 aa11.04□□□□□ -0.64
PTPRF-203ENST00000372407 J3QLW9 94 aa11.04□□□□□ -0.64
PTPRF-203ENST00000372407 CCRL2O00421 344 aa11.04□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms