RNA–Protein interactions for RNA: ENST00000347617.10

HMGA1-202, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,773 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-202ENST00000347617 ABCB1P08183 1280 aaPredicted RBP15.3■□□□□ 0.04
HMGA1-202ENST00000347617 GPX2P18283 190 aa15.3■□□□□ 0.04
HMGA1-202ENST00000347617 MAGP20916 626 aa15.3■□□□□ 0.04
HMGA1-202ENST00000347617 PPIBP23284 216 aaKnown RBP15.3■□□□□ 0.04
HMGA1-202ENST00000347617 RPS3P23396 243 aaKnown RBP eCLIP15.3■□□□□ 0.041e-11■■□□□ 11.4
HMGA1-202ENST00000347617 TNFSF8P32971 234 aa15.3■□□□□ 0.04
HMGA1-202ENST00000347617 CA8P35219 290 aa15.3■□□□□ 0.04
HMGA1-202ENST00000347617 VLDLRP98155 873 aa15.3■□□□□ 0.04
HMGA1-202ENST00000347617 GALK2Q01415 458 aa15.3■□□□□ 0.04
HMGA1-202ENST00000347617 RIPPLY1Q0D2K3 151 aa15.3■□□□□ 0.04
HMGA1-202ENST00000347617 DUOXA1Q1HG43 343 aa15.3■□□□□ 0.04
HMGA1-202ENST00000347617 MFSD4BQ5TF39 518 aa15.3■□□□□ 0.04
HMGA1-202ENST00000347617 DOK6Q6PKX4 331 aa15.3■□□□□ 0.04
HMGA1-202ENST00000347617 C7orf61Q8IZ16 206 aa15.3■□□□□ 0.04
HMGA1-202ENST00000347617 RGL4Q8IZJ4 473 aa15.3■□□□□ 0.04
HMGA1-202ENST00000347617 TCTE3Q8IZS6 198 aa15.3■□□□□ 0.04
HMGA1-202ENST00000347617 OR7D4Q8NG98 312 aa15.3■□□□□ 0.04
HMGA1-202ENST00000347617 ULK4Q96C45 1275 aa15.3■□□□□ 0.04
HMGA1-202ENST00000347617 MAGEB10Q96LZ2 347 aaPredicted RBP15.3■□□□□ 0.04
HMGA1-202ENST00000347617 HTATIP2Q9BUP3 242 aa15.3■□□□□ 0.04
HMGA1-202ENST00000347617 SYNDIG1Q9H7V2 258 aa15.3■□□□□ 0.04
HMGA1-202ENST00000347617 KRT87PA6NCN2 255 aa15.29■□□□□ 0.04
HMGA1-202ENST00000347617 hCG_2039718K7EN88 272 aa15.29■□□□□ 0.04
HMGA1-202ENST00000347617 EIF3FO00303 357 aaPredicted RBP15.29■□□□□ 0.04
HMGA1-202ENST00000347617 ALPPP05187 535 aa15.29■□□□□ 0.04
HMGA1-202ENST00000347617 IRF1P10914 325 aa15.29■□□□□ 0.04
HMGA1-202ENST00000347617 CR2P20023 1033 aa15.29■□□□□ 0.04
HMGA1-202ENST00000347617 HLA-DMAP28067 261 aa15.29■□□□□ 0.04
HMGA1-202ENST00000347617 C21orf33P30042 268 aaPredicted RBP15.29■□□□□ 0.04
HMGA1-202ENST00000347617 GRK5P34947 590 aa15.29■□□□□ 0.04
HMGA1-202ENST00000347617 GPAT3Q53EU6 434 aa15.29■□□□□ 0.04
HMGA1-202ENST00000347617 SMUG1Q53HV7 270 aa15.29■□□□□ 0.04
HMGA1-202ENST00000347617 TMPRSS11AQ6ZMR5 421 aa15.29■□□□□ 0.04
HMGA1-202ENST00000347617 ZNF438Q7Z4V0 828 aa15.29■□□□□ 0.04
HMGA1-202ENST00000347617 TCAIMQ8N3R3 496 aa15.29■□□□□ 0.04
HMGA1-202ENST00000347617 FAM181AQ8N9Y4 354 aa15.29■□□□□ 0.04
HMGA1-202ENST00000347617 CMTM7Q96FZ5 175 aa15.29■□□□□ 0.04
HMGA1-202ENST00000347617 Q96MT0 163 aa15.29■□□□□ 0.04
HMGA1-202ENST00000347617 CENPOQ9BU64 300 aa15.29■□□□□ 0.04
HMGA1-202ENST00000347617 MIR1-1HGQ9H1L0 117 aa15.29■□□□□ 0.04
HMGA1-202ENST00000347617 RDH14Q9HBH5 336 aa15.29■□□□□ 0.04
HMGA1-202ENST00000347617 PAQR5Q9NXK6 330 aaPredicted RBP15.29■□□□□ 0.04
HMGA1-202ENST00000347617 KLHL21Q9UJP4 597 aa15.29■□□□□ 0.04
HMGA1-202ENST00000347617 MAPRE3Q9UPY8 281 aa15.29■□□□□ 0.04
HMGA1-202ENST00000347617 SERTM1A2A2V5 107 aa15.29■□□□□ 0.04
HMGA1-202ENST00000347617 CCDC182A6NF36 153 aa15.29■□□□□ 0.04
HMGA1-202ENST00000347617 HIDE1A8MVS5 230 aa15.29■□□□□ 0.04
HMGA1-202ENST00000347617 SEC14L5O43304 696 aa15.29■□□□□ 0.04
HMGA1-202ENST00000347617 EPN2O95208 641 aa15.29■□□□□ 0.04
HMGA1-202ENST00000347617 PIRTP0C851 137 aa15.29■□□□□ 0.04
HMGA1-202ENST00000347617 PIPP12273 146 aaPredicted RBP15.29■□□□□ 0.04
HMGA1-202ENST00000347617 CTPS1P17812 591 aa15.29■□□□□ 0.04
HMGA1-202ENST00000347617 DGKAP23743 735 aa15.29■□□□□ 0.04
HMGA1-202ENST00000347617 SGSHP51688 502 aa15.29■□□□□ 0.04
HMGA1-202ENST00000347617 ZXDBP98169 803 aa15.29■□□□□ 0.04
HMGA1-202ENST00000347617 SRSF11Q05519 484 aaKnown RBP15.29■□□□□ 0.04
HMGA1-202ENST00000347617 CACNG1Q06432 222 aa15.29■□□□□ 0.04
HMGA1-202ENST00000347617 MTAPQ13126 283 aa15.29■□□□□ 0.04
HMGA1-202ENST00000347617 MPPE1Q53F39 396 aa15.29■□□□□ 0.04
HMGA1-202ENST00000347617 ZRANB3Q5FWF4 1079 aa15.29■□□□□ 0.04
HMGA1-202ENST00000347617 RNF219Q5W0B1 726 aaPredicted RBP15.29■□□□□ 0.04
HMGA1-202ENST00000347617 PSAPL1Q6NUJ1 521 aa15.29■□□□□ 0.04
HMGA1-202ENST00000347617 ZNF767PQ75MW2 155 aa15.29■□□□□ 0.04
HMGA1-202ENST00000347617 METTL3Q86U44 580 aaKnown RBP15.29■□□□□ 0.04
HMGA1-202ENST00000347617 HS6ST3Q8IZP7 471 aa15.29■□□□□ 0.04
HMGA1-202ENST00000347617 RDH10Q8IZV5 341 aa15.29■□□□□ 0.04
HMGA1-202ENST00000347617 CYP4Z2PQ8N1L4 340 aa15.29■□□□□ 0.04
HMGA1-202ENST00000347617 EFHBQ8N7U6 833 aa15.29■□□□□ 0.04
HMGA1-202ENST00000347617 NUDT8Q8WV74 236 aa15.29■□□□□ 0.04
HMGA1-202ENST00000347617 KIAA1143Q96AT1 154 aaPredicted RBP15.29■□□□□ 0.04
HMGA1-202ENST00000347617 HBEGFQ99075 208 aa15.29■□□□□ 0.04
HMGA1-202ENST00000347617 SPON2Q9BUD6 331 aa15.29■□□□□ 0.04
HMGA1-202ENST00000347617 CINPQ9BW66 212 aaPredicted RBP15.29■□□□□ 0.04
HMGA1-202ENST00000347617 ADGRE3Q9BY15 652 aa15.29■□□□□ 0.04
HMGA1-202ENST00000347617 NIPAL2Q9H841 368 aa15.29■□□□□ 0.04
HMGA1-202ENST00000347617 SLC6A13Q9NSD5 602 aa15.29■□□□□ 0.04
HMGA1-202ENST00000347617 WWOXQ9NZC7 414 aa15.29■□□□□ 0.04
HMGA1-202ENST00000347617 OR51B4Q9Y5P0 310 aa15.29■□□□□ 0.04
HMGA1-202ENST00000347617 CLIC1O00299 241 aa15.28■□□□□ 0.04
HMGA1-202ENST00000347617 TAPBPO15533 448 aa15.28■□□□□ 0.04
HMGA1-202ENST00000347617 TBL1XO60907 577 aa15.28■□□□□ 0.04
HMGA1-202ENST00000347617 KCNK5O95279 499 aa15.28■□□□□ 0.04
HMGA1-202ENST00000347617 CKMP06732 381 aa15.28■□□□□ 0.04
HMGA1-202ENST00000347617 EPB42P16452 691 aa15.28■□□□□ 0.04
HMGA1-202ENST00000347617 ENDOUP21128 410 aaKnown RBP15.28■□□□□ 0.04
HMGA1-202ENST00000347617 EPHA2P29317 976 aa15.28■□□□□ 0.04
HMGA1-202ENST00000347617 HSPA7P48741 367 aa15.28■□□□□ 0.04
HMGA1-202ENST00000347617 RUNX1T1Q06455 604 aa15.28■□□□□ 0.04
HMGA1-202ENST00000347617 ST3GAL4Q11206 333 aa15.28■□□□□ 0.04
HMGA1-202ENST00000347617 ELOAQ14241 798 aaKnown RBP15.28■□□□□ 0.04
HMGA1-202ENST00000347617 LAPTM4AQ15012 233 aa15.28■□□□□ 0.04
HMGA1-202ENST00000347617 HKDC1Q2TB90 917 aa15.28■□□□□ 0.04
HMGA1-202ENST00000347617 GGTA1PQ4G0N0 100 aa15.28■□□□□ 0.04
HMGA1-202ENST00000347617 NXNL2Q5VZ03 156 aa15.28■□□□□ 0.04
HMGA1-202ENST00000347617 OR4F3Q6IEY1 312 aa15.28■□□□□ 0.04
HMGA1-202ENST00000347617 ARMCX6Q7L4S7 300 aa15.28■□□□□ 0.04
HMGA1-202ENST00000347617 VWA5B2Q8N398 1253 aa15.28■□□□□ 0.04
HMGA1-202ENST00000347617 MDGA1Q8NFP4 955 aa15.28■□□□□ 0.04
HMGA1-202ENST00000347617 ZFAND1Q8TCF1 268 aa15.28■□□□□ 0.04
HMGA1-202ENST00000347617 HCAR2Q8TDS4 363 aa15.28■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms