RNA–Protein interactions for RNA: ENST00000347613.8

CLCN3-201, Transcript of chloride voltage-gated channel 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CLCN3, Length 3,635 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3-201ENST00000347613 PUM1Q14671 1186 aaKnown RBP eCLIP5.8□□□□□ -1.48
CLCN3-201ENST00000347613 GANABQ14697 944 aaKnown RBP5.8□□□□□ -1.48
CLCN3-201ENST00000347613 SLC5A12Q1EHB4 618 aa5.8□□□□□ -1.48
CLCN3-201ENST00000347613 TTLL9Q3SXZ7 439 aa5.8□□□□□ -1.48
CLCN3-201ENST00000347613 PLPP4Q5VZY2 271 aa5.8□□□□□ -1.48
CLCN3-201ENST00000347613 TTC23Q5W5X9 447 aa5.8□□□□□ -1.48
CLCN3-201ENST00000347613 CNKSR3Q6P9H4 555 aa5.8□□□□□ -1.48
CLCN3-201ENST00000347613 MEX3DQ86XN8 651 aaKnown RBP5.8□□□□□ -1.48
CLCN3-201ENST00000347613 CACUL1Q86Y37 369 aa5.8□□□□□ -1.48
CLCN3-201ENST00000347613 CFAP206Q8IYR0 622 aa5.8□□□□□ -1.48
CLCN3-201ENST00000347613 SVOPLQ8N434 492 aa5.8□□□□□ -1.48
CLCN3-201ENST00000347613 DYNC2LI1Q8TCX1 351 aa5.8□□□□□ -1.48
CLCN3-201ENST00000347613 BTN2A2Q8WVV5 523 aa5.8□□□□□ -1.48
CLCN3-201ENST00000347613 DUSP26Q9BV47 211 aa5.8□□□□□ -1.48
CLCN3-201ENST00000347613 ACAT2Q9BWD1 397 aa5.8□□□□□ -1.48
CLCN3-201ENST00000347613 YTHDF1Q9BYJ9 559 aaKnown RBP5.8□□□□□ -1.48
CLCN3-201ENST00000347613 SLIRPQ9GZT3 109 aaKnown RBP5.8□□□□□ -1.48
CLCN3-201ENST00000347613 GABARAPL1Q9H0R8 117 aa5.8□□□□□ -1.48
CLCN3-201ENST00000347613 SPHK2Q9NRA0 654 aa5.8□□□□□ -1.48
CLCN3-201ENST00000347613 SCN3AQ9NY46 2000 aa5.8□□□□□ -1.48
CLCN3-201ENST00000347613 GPR83Q9NYM4 423 aa5.8□□□□□ -1.48
CLCN3-201ENST00000347613 TMEM98Q9Y2Y6 226 aa5.8□□□□□ -1.48
CLCN3-201ENST00000347613 CAB39Q9Y376 341 aaPredicted RBP5.8□□□□□ -1.48
CLCN3-201ENST00000347613 SAMHD1Q9Y3Z3 626 aaKnown RBP5.8□□□□□ -1.48
CLCN3-201ENST00000347613 PCDHB11Q9Y5F2 797 aa5.8□□□□□ -1.48
CLCN3-201ENST00000347613 LYVE1Q9Y5Y7 322 aa5.8□□□□□ -1.48
CLCN3-201ENST00000347613 MUC22E2RYF6 1773 aaPredicted RBP5.8□□□□□ -1.48
CLCN3-201ENST00000347613 TRAV19A0A0A6YYK7 116 aa5.8□□□□□ -1.48
CLCN3-201ENST00000347613 DSCR3O14972 297 aa5.8□□□□□ -1.48
CLCN3-201ENST00000347613 LATO43561 262 aa5.8□□□□□ -1.48
CLCN3-201ENST00000347613 SSX4O60224 188 aa5.8□□□□□ -1.48
CLCN3-201ENST00000347613 TNFRSF21O75509 655 aa5.8□□□□□ -1.48
CLCN3-201ENST00000347613 FKBP9O95302 570 aa5.8□□□□□ -1.48
CLCN3-201ENST00000347613 BCL10O95999 233 aa5.8□□□□□ -1.48
CLCN3-201ENST00000347613 C8GP07360 202 aa5.8□□□□□ -1.48
CLCN3-201ENST00000347613 GSTM1P09488 218 aa5.8□□□□□ -1.48
CLCN3-201ENST00000347613 PRPS2P11908 318 aa5.8□□□□□ -1.48
CLCN3-201ENST00000347613 JUNDP17535 347 aa5.8□□□□□ -1.48
CLCN3-201ENST00000347613 GABRB1P18505 474 aa5.8□□□□□ -1.48
CLCN3-201ENST00000347613 CD72P21854 359 aa5.8□□□□□ -1.48
CLCN3-201ENST00000347613 HPCAL1P37235 193 aa5.8□□□□□ -1.48
CLCN3-201ENST00000347613 TGM4P49221 684 aa5.8□□□□□ -1.48
CLCN3-201ENST00000347613 LIM2P55344 173 aa5.8□□□□□ -1.48
CLCN3-201ENST00000347613 TBPL1P62380 186 aa5.8□□□□□ -1.48
CLCN3-201ENST00000347613 GSTM4Q03013 218 aa5.8□□□□□ -1.48
CLCN3-201ENST00000347613 NPRL3Q12980 569 aa5.8□□□□□ -1.48
CLCN3-201ENST00000347613 MAD2L1Q13257 205 aaPredicted RBP5.8□□□□□ -1.48
CLCN3-201ENST00000347613 GAB4Q2WGN9 574 aa5.8□□□□□ -1.48
CLCN3-201ENST00000347613 PLEKHS1Q5SXH7 462 aa5.8□□□□□ -1.48
CLCN3-201ENST00000347613 FKBP9P1Q75LS8 142 aa5.8□□□□□ -1.48
CLCN3-201ENST00000347613 EIF3MQ7L2H7 374 aaKnown RBP5.8□□□□□ -1.48
CLCN3-201ENST00000347613 KIAA0907Q7Z7F0 614 aaPredicted RBP5.8□□□□□ -1.48
CLCN3-201ENST00000347613 TMPRSS11BQ86T26 416 aa5.8□□□□□ -1.48
CLCN3-201ENST00000347613 DDHD1Q8NEL9 900 aa5.8□□□□□ -1.48
CLCN3-201ENST00000347613 ZNF555Q8NEP9 628 aa5.8□□□□□ -1.48
CLCN3-201ENST00000347613 OR4C15Q8NGM1 316 aa5.8□□□□□ -1.48
CLCN3-201ENST00000347613 OR56A3Q8NH54 315 aa5.8□□□□□ -1.48
CLCN3-201ENST00000347613 CHFRQ96EP1 664 aa5.8□□□□□ -1.48
CLCN3-201ENST00000347613 CNDP2Q96KP4 475 aaKnown RBP5.8□□□□□ -1.48
CLCN3-201ENST00000347613 ZNF717Q9BY31 904 aaPredicted RBP5.8□□□□□ -1.48
CLCN3-201ENST00000347613 SH3BP4Q9P0V3 963 aa5.8□□□□□ -1.48
CLCN3-201ENST00000347613 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP5.8□□□□□ -1.48
CLCN3-201ENST00000347613 ERGIC3Q9Y282 383 aa5.8□□□□□ -1.48
CLCN3-201ENST00000347613 SOBPA7XYQ1 873 aa5.79□□□□□ -1.48
CLCN3-201ENST00000347613 A8MU76 341 aa5.79□□□□□ -1.48
CLCN3-201ENST00000347613 H0YIV9 168 aa5.79□□□□□ -1.48
CLCN3-201ENST00000347613 SCAMP1O15126 338 aa5.79□□□□□ -1.48
CLCN3-201ENST00000347613 GRM6O15303 877 aa5.79□□□□□ -1.48
CLCN3-201ENST00000347613 GABARAPO95166 117 aa5.79□□□□□ -1.48
CLCN3-201ENST00000347613 RHOP08100 348 aa5.79□□□□□ -1.48
CLCN3-201ENST00000347613 HIST1H2AGP0C0S8 130 aaPredicted RBP5.79□□□□□ -1.48
CLCN3-201ENST00000347613 MPC1LP0DKB6 136 aa5.79□□□□□ -1.48
CLCN3-201ENST00000347613 SPNP16150 400 aa5.79□□□□□ -1.48
CLCN3-201ENST00000347613 CEBPBP17676 345 aa5.79□□□□□ -1.48
CLCN3-201ENST00000347613 HIST1H2ADP20671 130 aa5.79□□□□□ -1.48
CLCN3-201ENST00000347613 MAGP20916 626 aa5.79□□□□□ -1.48
CLCN3-201ENST00000347613 PRPS1L1P21108 318 aa5.79□□□□□ -1.48
CLCN3-201ENST00000347613 HOXD10P28358 340 aa5.79□□□□□ -1.48
CLCN3-201ENST00000347613 FEN1P39748 380 aaKnown RBP5.79□□□□□ -1.48
CLCN3-201ENST00000347613 LIMK1P53667 647 aa5.79□□□□□ -1.48
CLCN3-201ENST00000347613 CNTN1Q12860 1018 aa5.79□□□□□ -1.48
CLCN3-201ENST00000347613 ZNF77Q15935 545 aa5.79□□□□□ -1.48
CLCN3-201ENST00000347613 CARTPTQ16568 116 aa5.79□□□□□ -1.48
CLCN3-201ENST00000347613 PAGE2BQ5JRK9 111 aa5.79□□□□□ -1.48
CLCN3-201ENST00000347613 LYPLAL1Q5VWZ2 237 aa5.79□□□□□ -1.48
CLCN3-201ENST00000347613 COMMD6Q7Z4G1 85 aa5.79□□□□□ -1.48
CLCN3-201ENST00000347613 GRASPQ7Z6J2 395 aaPredicted RBP5.79□□□□□ -1.48
CLCN3-201ENST00000347613 SLCO6A1Q86UG4 719 aa5.79□□□□□ -1.48
CLCN3-201ENST00000347613 NLRP8Q86W28 1048 aa5.79□□□□□ -1.48
CLCN3-201ENST00000347613 LACC1Q8IV20 430 aa5.79□□□□□ -1.48
CLCN3-201ENST00000347613 C12orf76Q8N812 135 aaPredicted RBP5.79□□□□□ -1.48
CLCN3-201ENST00000347613 ANKRD53Q8N9V6 530 aa5.79□□□□□ -1.48
CLCN3-201ENST00000347613 LEMD2Q8NC56 503 aa5.79□□□□□ -1.48
CLCN3-201ENST00000347613 ZNF540Q8NDQ6 660 aa5.79□□□□□ -1.48
CLCN3-201ENST00000347613 NFKBIDQ8NI38 313 aa5.79□□□□□ -1.48
CLCN3-201ENST00000347613 ZNF566Q969W8 418 aa5.79□□□□□ -1.48
CLCN3-201ENST00000347613 ARRDC3Q96B67 414 aa5.79□□□□□ -1.48
CLCN3-201ENST00000347613 COQ8BQ96D53 544 aa5.79□□□□□ -1.48
CLCN3-201ENST00000347613 HIST1H2AHQ96KK5 128 aa5.79□□□□□ -1.48
CLCN3-201ENST00000347613 FAM210AQ96ND0 272 aa5.79□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms