RNA–Protein interactions for RNA: ENST00000338963.6

NEDD4-201, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-201ENST00000338963 ATXN1LP0C7T5 689 aaKnown RBP4.02□□□□□ -1.77
NEDD4-201ENST00000338963 GKN3PP0CG01 181 aa4.02□□□□□ -1.77
NEDD4-201ENST00000338963 PSMA1P25786 263 aaKnown RBP4.02□□□□□ -1.77
NEDD4-201ENST00000338963 DDTP30046 118 aa4.02□□□□□ -1.77
NEDD4-201ENST00000338963 SDC4P31431 198 aa4.02□□□□□ -1.77
NEDD4-201ENST00000338963 KCNQ1P51787 676 aa4.02□□□□□ -1.77
NEDD4-201ENST00000338963 SNRPEP62304 92 aaKnown RBP4.02□□□□□ -1.77
NEDD4-201ENST00000338963 SLC35A2P78381 396 aa4.02□□□□□ -1.77
NEDD4-201ENST00000338963 MTM1Q13496 603 aa4.02□□□□□ -1.77
NEDD4-201ENST00000338963 LARS2Q15031 903 aaKnown RBP4.02□□□□□ -1.77
NEDD4-201ENST00000338963 PROX2Q3B8N5 592 aa4.02□□□□□ -1.77
NEDD4-201ENST00000338963 SPANXN3Q5MJ09 141 aa4.02□□□□□ -1.77
NEDD4-201ENST00000338963 OTUD3Q5T2D3 398 aaPredicted RBP4.02□□□□□ -1.77
NEDD4-201ENST00000338963 OR5M10Q6IEU7 315 aa4.02□□□□□ -1.77
NEDD4-201ENST00000338963 CES5AQ6NT32 575 aa4.02□□□□□ -1.77
NEDD4-201ENST00000338963 DNAJC24Q6P3W2 148 aa4.02□□□□□ -1.77
NEDD4-201ENST00000338963 ISCA2Q86U28 154 aa4.02□□□□□ -1.77
NEDD4-201ENST00000338963 ADGRF3Q8IZF5 1079 aa4.02□□□□□ -1.77
NEDD4-201ENST00000338963 SLC34A3Q8N130 599 aa4.02□□□□□ -1.77
NEDD4-201ENST00000338963 OR52E4Q8NGH9 312 aa4.02□□□□□ -1.77
NEDD4-201ENST00000338963 UCN3Q969E3 161 aa4.02□□□□□ -1.77
NEDD4-201ENST00000338963 DNAJC19Q96DA6 116 aa4.02□□□□□ -1.77
NEDD4-201ENST00000338963 MAPKAP1Q9BPZ7 522 aa4.02□□□□□ -1.77
NEDD4-201ENST00000338963 MARVELD1Q9BSK0 173 aa4.02□□□□□ -1.77
NEDD4-201ENST00000338963 MECRQ9BV79 373 aa4.02□□□□□ -1.77
NEDD4-201ENST00000338963 NFKBIZQ9BYH8 718 aa4.02□□□□□ -1.77
NEDD4-201ENST00000338963 SPRTNQ9H040 489 aaPredicted RBP4.02□□□□□ -1.77
NEDD4-201ENST00000338963 CERS4Q9HA82 394 aa4.02□□□□□ -1.77
NEDD4-201ENST00000338963 GPR160Q9UJ42 338 aa4.02□□□□□ -1.77
NEDD4-201ENST00000338963 UBQLN1Q9UMX0 589 aaKnown RBP4.02□□□□□ -1.77
NEDD4-201ENST00000338963 KIAA1024Q9UPX6 916 aa4.02□□□□□ -1.77
NEDD4-201ENST00000338963 SYNDIG1LA6NDD5 238 aa4.02□□□□□ -1.77
NEDD4-201ENST00000338963 NCF1BA6NI72 391 aaPredicted RBP4.02□□□□□ -1.77
NEDD4-201ENST00000338963 SLC15A5A6NIM6 579 aa4.02□□□□□ -1.77
NEDD4-201ENST00000338963 PP2D1A8MPX8 630 aa4.02□□□□□ -1.77
NEDD4-201ENST00000338963 NCF1CA8MVU1 366 aaPredicted RBP4.02□□□□□ -1.77
NEDD4-201ENST00000338963 M0QYV0 167 aa4.02□□□□□ -1.77
NEDD4-201ENST00000338963 ZNF197O14709 1029 aa4.02□□□□□ -1.77
NEDD4-201ENST00000338963 POP7O75817 140 aaKnown RBP4.02□□□□□ -1.77
NEDD4-201ENST00000338963 AP2A1O95782 977 aa4.02□□□□□ -1.77
NEDD4-201ENST00000338963 TGFBR2P37173 567 aa4.02□□□□□ -1.77
NEDD4-201ENST00000338963 RAD52P43351 418 aa4.02□□□□□ -1.77
NEDD4-201ENST00000338963 SESN2P58004 480 aaPredicted RBP4.02□□□□□ -1.77
NEDD4-201ENST00000338963 RAB8AP61006 207 aa4.02□□□□□ -1.77
NEDD4-201ENST00000338963 POU4F1Q01851 419 aa4.02□□□□□ -1.77
NEDD4-201ENST00000338963 DSC2Q02487 901 aa4.02□□□□□ -1.77
NEDD4-201ENST00000338963 SMAD4Q13485 552 aaKnown RBP4.02□□□□□ -1.77
NEDD4-201ENST00000338963 FNBP1LQ5T0N5 605 aa4.02□□□□□ -1.77
NEDD4-201ENST00000338963 PRSS55Q6UWB4 352 aaPredicted RBP4.02□□□□□ -1.77
NEDD4-201ENST00000338963 NLRC3Q7RTR2 1065 aa4.02□□□□□ -1.77
NEDD4-201ENST00000338963 GALNT5Q7Z7M9 940 aa4.02□□□□□ -1.77
NEDD4-201ENST00000338963 C7orf31Q8N865 590 aa4.02□□□□□ -1.77
NEDD4-201ENST00000338963 PXT1Q8NFP0 134 aa4.02□□□□□ -1.77
NEDD4-201ENST00000338963 OR5T3Q8NGG3 340 aa4.02□□□□□ -1.77
NEDD4-201ENST00000338963 SLC22A11Q9NSA0 550 aa4.02□□□□□ -1.77
NEDD4-201ENST00000338963 C1orf112Q9NSG2 853 aa4.02□□□□□ -1.77
NEDD4-201ENST00000338963 ZNF629Q9UEG4 869 aaPredicted RBP4.02□□□□□ -1.77
NEDD4-201ENST00000338963 TMEM72A0PK05 275 aa4.01□□□□□ -1.77
NEDD4-201ENST00000338963 TRDCB7Z8K6 153 aa4.01□□□□□ -1.77
NEDD4-201ENST00000338963 TXNL1O43396 289 aa4.01□□□□□ -1.77
NEDD4-201ENST00000338963 SELENOFO60613 162 aa4.01□□□□□ -1.77
NEDD4-201ENST00000338963 CILPO75339 1184 aa4.01□□□□□ -1.77
NEDD4-201ENST00000338963 GIPP09681 153 aaPredicted RBP4.01□□□□□ -1.77
NEDD4-201ENST00000338963 IGFBP5P24593 272 aa4.01□□□□□ -1.77
NEDD4-201ENST00000338963 SHMT2P34897 504 aa4.01□□□□□ -1.77
NEDD4-201ENST00000338963 GRK5P34947 590 aa4.01□□□□□ -1.77
NEDD4-201ENST00000338963 PMELP40967 661 aa4.01□□□□□ -1.77
NEDD4-201ENST00000338963 ADPRHP54922 357 aa4.01□□□□□ -1.77
NEDD4-201ENST00000338963 TNFRSF17Q02223 184 aa4.01□□□□□ -1.77
NEDD4-201ENST00000338963 ILKQ13418 452 aa4.01□□□□□ -1.77
NEDD4-201ENST00000338963 DHCR24Q15392 516 aa4.01□□□□□ -1.77
NEDD4-201ENST00000338963 NPY5RQ15761 445 aa4.01□□□□□ -1.77
NEDD4-201ENST00000338963 DPY19L2P1Q6NXN4 242 aa4.01□□□□□ -1.77
NEDD4-201ENST00000338963 PMF1Q6P1K2 205 aa4.01□□□□□ -1.77
NEDD4-201ENST00000338963 CDHR3Q6ZTQ4 885 aa4.01□□□□□ -1.77
NEDD4-201ENST00000338963 WDR53Q7Z5U6 358 aaPredicted RBP4.01□□□□□ -1.77
NEDD4-201ENST00000338963 PTAR1Q7Z6K3 402 aaPredicted RBP4.01□□□□□ -1.77
NEDD4-201ENST00000338963 CEP76Q8TAP6 659 aa4.01□□□□□ -1.77
NEDD4-201ENST00000338963 FEZF2Q8TBJ5 459 aa4.01□□□□□ -1.77
NEDD4-201ENST00000338963 SLC20A1Q8WUM9 679 aa4.01□□□□□ -1.77
NEDD4-201ENST00000338963 FAM71F1Q96KD3 344 aaPredicted RBP4.01□□□□□ -1.77
NEDD4-201ENST00000338963 ASB16Q96NS5 453 aa4.01□□□□□ -1.77
NEDD4-201ENST00000338963 LMF1Q96S06 567 aa4.01□□□□□ -1.77
NEDD4-201ENST00000338963 ZNF2Q9BSG1 426 aaPredicted RBP4.01□□□□□ -1.77
NEDD4-201ENST00000338963 BEX2Q9BXY8 128 aa4.01□□□□□ -1.77
NEDD4-201ENST00000338963 TMEM117Q9H0C3 514 aa4.01□□□□□ -1.77
NEDD4-201ENST00000338963 PCDHAC1Q9H158 963 aa4.01□□□□□ -1.77
NEDD4-201ENST00000338963 SARS2Q9NP81 518 aaKnown RBP4.01□□□□□ -1.77
NEDD4-201ENST00000338963 KRCC1Q9NPI7 259 aaPredicted RBP4.01□□□□□ -1.77
NEDD4-201ENST00000338963 TMEM184BQ9Y519 407 aaPredicted RBP4.01□□□□□ -1.77
NEDD4-201ENST00000338963 GLTPD2A6NH11 291 aa4.01□□□□□ -1.77
NEDD4-201ENST00000338963 CBY3A6NI87 242 aa4.01□□□□□ -1.77
NEDD4-201ENST00000338963 DCLK1O15075 740 aa4.01□□□□□ -1.77
NEDD4-201ENST00000338963 USP2O75604 605 aaPredicted RBP4.01□□□□□ -1.77
NEDD4-201ENST00000338963 ZBTB7AO95365 584 aa4.01□□□□□ -1.77
NEDD4-201ENST00000338963 TFEBP19484 476 aa4.01□□□□□ -1.77
NEDD4-201ENST00000338963 FPR1P21462 350 aa4.01□□□□□ -1.77
NEDD4-201ENST00000338963 MATKP42679 507 aa4.01□□□□□ -1.77
NEDD4-201ENST00000338963 PITPNAQ00169 270 aa4.01□□□□□ -1.77
NEDD4-201ENST00000338963 LIPEQ05469 1076 aa4.01□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms