RNA–Protein interactions for RNA: ENST00000276201.6

UPF3B-201, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best) BASIC

Gene UPF3B, Length 2,378 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-201ENST00000276201 C6orf183Q5T699 404 aa9.96□□□□□ -0.82
UPF3B-201ENST00000276201 RSBN1Q5VWQ0 802 aaPredicted RBP9.96□□□□□ -0.82
UPF3B-201ENST00000276201 CCDC81Q6ZN84 652 aa9.96□□□□□ -0.82
UPF3B-201ENST00000276201 CEP68Q76N32 757 aa9.96□□□□□ -0.82
UPF3B-201ENST00000276201 ASCC1Q8N9N2 400 aaKnown RBP9.96□□□□□ -0.82
UPF3B-201ENST00000276201 TTC9Q92623 222 aa9.96□□□□□ -0.82
UPF3B-201ENST00000276201 RPL3LQ92901 407 aaKnown RBP9.96□□□□□ -0.82
UPF3B-201ENST00000276201 USP7Q93009 1102 aa9.96□□□□□ -0.82
UPF3B-201ENST00000276201 TESCQ96BS2 214 aa9.96□□□□□ -0.82
UPF3B-201ENST00000276201 TMCO6Q96DC7 493 aa9.96□□□□□ -0.82
UPF3B-201ENST00000276201 C19orf43Q9BQ61 176 aa9.96□□□□□ -0.82
UPF3B-201ENST00000276201 NTMT1Q9BV86 223 aa9.96□□□□□ -0.82
UPF3B-201ENST00000276201 C3orf14Q9HBI5 128 aa9.96□□□□□ -0.82
UPF3B-201ENST00000276201 PRMT8Q9NR22 394 aaPredicted RBP9.96□□□□□ -0.82
UPF3B-201ENST00000276201 EXD2Q9NVH0 621 aa9.96□□□□□ -0.82
UPF3B-201ENST00000276201 DHRS7Q9Y394 339 aa9.96□□□□□ -0.82
UPF3B-201ENST00000276201 ASB1Q9Y576 335 aa9.96□□□□□ -0.82
UPF3B-201ENST00000276201 PCDHGB2Q9Y5G2 931 aa9.96□□□□□ -0.82
UPF3B-201ENST00000276201 N6AMT1Q9Y5N5 214 aa9.96□□□□□ -0.82
UPF3B-201ENST00000276201 LYVE1Q9Y5Y7 322 aa9.96□□□□□ -0.82
UPF3B-201ENST00000276201 SERTM1A2A2V5 107 aa9.95□□□□□ -0.82
UPF3B-201ENST00000276201 PLK4O00444 970 aa9.95□□□□□ -0.82
UPF3B-201ENST00000276201 ACSL4O60488 711 aa9.95□□□□□ -0.82
UPF3B-201ENST00000276201 TSPAN3O60637 253 aa9.95□□□□□ -0.82
UPF3B-201ENST00000276201 MOCS2O96007 188 aaPredicted RBP9.95□□□□□ -0.82
UPF3B-201ENST00000276201 S100BP04271 92 aaPredicted RBP9.95□□□□□ -0.82
UPF3B-201ENST00000276201 LCKP06239 509 aa9.95□□□□□ -0.82
UPF3B-201ENST00000276201 TIE1P35590 1138 aa9.95□□□□□ -0.82
UPF3B-201ENST00000276201 PTGER3P43115 390 aa9.95□□□□□ -0.82
UPF3B-201ENST00000276201 HTR3AP46098 478 aa9.95□□□□□ -0.82
UPF3B-201ENST00000276201 SLC11A2P49281 568 aa9.95□□□□□ -0.82
UPF3B-201ENST00000276201 SGSHP51688 502 aa9.95□□□□□ -0.82
UPF3B-201ENST00000276201 PTPN5P54829 565 aa9.95□□□□□ -0.82
UPF3B-201ENST00000276201 CDK10Q15131 360 aa9.95□□□□□ -0.82
UPF3B-201ENST00000276201 SPANXN4Q5MJ08 99 aa9.95□□□□□ -0.82
UPF3B-201ENST00000276201 MAMSTRQ6ZN01 415 aa9.95□□□□□ -0.82
UPF3B-201ENST00000276201 MILR1Q7Z6M3 343 aa9.95□□□□□ -0.82
UPF3B-201ENST00000276201 SPEM1Q8N4L4 309 aa9.95□□□□□ -0.82
UPF3B-201ENST00000276201 EEF1AKMT1Q8WVE0 214 aa9.95□□□□□ -0.82
UPF3B-201ENST00000276201 NCLNQ969V3 563 aa9.95□□□□□ -0.82
UPF3B-201ENST00000276201 MYEOVQ96EZ4 313 aa9.95□□□□□ -0.82
UPF3B-201ENST00000276201 DEC1Q9P2X7 70 aa9.95□□□□□ -0.82
UPF3B-201ENST00000276201 DKK3Q9UBP4 350 aa9.95□□□□□ -0.82
UPF3B-201ENST00000276201 WBP11Q9Y2W2 641 aaKnown RBP9.95□□□□□ -0.82
UPF3B-201ENST00000276201 ANGPTL3Q9Y5C1 460 aa9.95□□□□□ -0.82
UPF3B-201ENST00000276201 PCDHB1Q9Y5F3 818 aa9.95□□□□□ -0.82
UPF3B-201ENST00000276201 ATG2BQ96BY7 2078 aa9.95□□□□□ -0.82
UPF3B-201ENST00000276201 LAMTOR5O43504 91 aa9.95□□□□□ -0.82
UPF3B-201ENST00000276201 MAN1A2O60476 641 aa9.95□□□□□ -0.82
UPF3B-201ENST00000276201 RAMP2O60895 175 aa9.95□□□□□ -0.82
UPF3B-201ENST00000276201 APODP05090 189 aa9.95□□□□□ -0.82
UPF3B-201ENST00000276201 CISD3P0C7P0 127 aa9.95□□□□□ -0.82
UPF3B-201ENST00000276201 GADD45AP24522 165 aa9.95□□□□□ -0.82
UPF3B-201ENST00000276201 PTX3P26022 381 aaPredicted RBP9.95□□□□□ -0.82
UPF3B-201ENST00000276201 HOXD9P28356 352 aaPredicted RBP9.95□□□□□ -0.82
UPF3B-201ENST00000276201 CLCN7P51798 805 aa9.95□□□□□ -0.82
UPF3B-201ENST00000276201 SEC13P55735 322 aa9.95□□□□□ -0.82
UPF3B-201ENST00000276201 COPZ1P61923 177 aa9.95□□□□□ -0.82
UPF3B-201ENST00000276201 C19orf57Q0VDD7 668 aa9.95□□□□□ -0.82
UPF3B-201ENST00000276201 NPRL3Q12980 569 aa9.95□□□□□ -0.82
UPF3B-201ENST00000276201 SIM2Q14190 667 aaPredicted RBP9.95□□□□□ -0.82
UPF3B-201ENST00000276201 STARD3Q14849 445 aa9.95□□□□□ -0.82
UPF3B-201ENST00000276201 CDKL4Q5MAI5 379 aa9.95□□□□□ -0.82
UPF3B-201ENST00000276201 SBSNQ6UWP8 590 aa9.95□□□□□ -0.82
UPF3B-201ENST00000276201 EIF3MQ7L2H7 374 aaKnown RBP9.95□□□□□ -0.82
UPF3B-201ENST00000276201 GPR155Q7Z3F1 870 aa9.95□□□□□ -0.82
UPF3B-201ENST00000276201 CCDC71Q8IV32 467 aaPredicted RBP9.95□□□□□ -0.82
UPF3B-201ENST00000276201 FAM83FQ8NEG4 500 aaPredicted RBP9.95□□□□□ -0.82
UPF3B-201ENST00000276201 ANGPTL6Q8NI99 470 aa9.95□□□□□ -0.82
UPF3B-201ENST00000276201 COL21A1Q96P44 957 aa9.95□□□□□ -0.82
UPF3B-201ENST00000276201 OR52E6Q96RD3 313 aa9.95□□□□□ -0.82
UPF3B-201ENST00000276201 P2RY12Q9H244 342 aa9.95□□□□□ -0.82
UPF3B-201ENST00000276201 LRTM1Q9HBL6 345 aa9.95□□□□□ -0.82
UPF3B-201ENST00000276201 KRT84Q9NSB2 600 aa9.95□□□□□ -0.82
UPF3B-201ENST00000276201 CRNNQ9UBG3 495 aaPredicted RBP9.95□□□□□ -0.82
UPF3B-201ENST00000276201 CLEC4EQ9ULY5 219 aa9.95□□□□□ -0.82
UPF3B-201ENST00000276201 C2orf81A6NN90 581 aa9.94□□□□□ -0.82
UPF3B-201ENST00000276201 CHURC1-FNTBB4DL54 471 aa9.94□□□□□ -0.82
UPF3B-201ENST00000276201 KRT6AP02538 564 aa9.94□□□□□ -0.82
UPF3B-201ENST00000276201 C9P02748 559 aa9.94□□□□□ -0.82
UPF3B-201ENST00000276201 KRT6BP04259 564 aa9.94□□□□□ -0.82
UPF3B-201ENST00000276201 FABP3P05413 133 aa9.94□□□□□ -0.82
UPF3B-201ENST00000276201 EBLN1P0CF75 366 aa9.94□□□□□ -0.82
UPF3B-201ENST00000276201 TDGF1P13385 188 aa9.94□□□□□ -0.82
UPF3B-201ENST00000276201 LPOP22079 712 aaPredicted RBP9.94□□□□□ -0.82
UPF3B-201ENST00000276201 RPS3P23396 243 aaKnown RBP eCLIP9.94□□□□□ -0.82
UPF3B-201ENST00000276201 GGT2P36268 569 aa9.94□□□□□ -0.82
UPF3B-201ENST00000276201 PIK3CGP48736 1102 aa9.94□□□□□ -0.82
UPF3B-201ENST00000276201 RPL38P63173 70 aaKnown RBP9.94□□□□□ -0.82
UPF3B-201ENST00000276201 PCDH1Q08174 1060 aa9.94□□□□□ -0.82
UPF3B-201ENST00000276201 GPR50Q13585 617 aa9.94□□□□□ -0.82
UPF3B-201ENST00000276201 DGCR6Q14129 220 aa9.94□□□□□ -0.82
UPF3B-201ENST00000276201 ZNF235Q14590 738 aa9.94□□□□□ -0.82
UPF3B-201ENST00000276201 PTPRCAPQ14761 206 aa9.94□□□□□ -0.82
UPF3B-201ENST00000276201 TIGD6Q17RP2 521 aa9.94□□□□□ -0.82
UPF3B-201ENST00000276201 TIMM50Q3ZCQ8 353 aa9.94□□□□□ -0.82
UPF3B-201ENST00000276201 MPPE1Q53F39 396 aa9.94□□□□□ -0.82
UPF3B-201ENST00000276201 ALFQ53S48 1182 aa9.94□□□□□ -0.82
UPF3B-201ENST00000276201 ATAD3CQ5T2N8 411 aa9.94□□□□□ -0.82
UPF3B-201ENST00000276201 GCNT7Q6ZNI0 430 aa9.94□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms