RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 TLL1O43897 1013 aa15.97■□□□□ 0.15
VPS54-201ENST00000272322 SOX14O95416 240 aa15.97■□□□□ 0.15
VPS54-201ENST00000272322 CPNE6O95741 557 aa15.97■□□□□ 0.15
VPS54-201ENST00000272322 IL3P08700 152 aa15.97■□□□□ 0.15
VPS54-201ENST00000272322 LEXMQ3ZCV2 418 aa15.97■□□□□ 0.15
VPS54-201ENST00000272322 GTF2IRD2BQ6EKJ0 949 aa15.97■□□□□ 0.15
VPS54-201ENST00000272322 FAM83HQ6ZRV2 1179 aaPredicted RBP15.97■□□□□ 0.15
VPS54-201ENST00000272322 PAGE2Q7Z2X7 111 aa15.97■□□□□ 0.15
VPS54-201ENST00000272322 GTF2IRD2Q86UP8 949 aa15.97■□□□□ 0.15
VPS54-201ENST00000272322 CENPSQ8N2Z9 138 aa15.97■□□□□ 0.15
VPS54-201ENST00000272322 DNASE1L2Q92874 299 aa15.97■□□□□ 0.15
VPS54-201ENST00000272322 HHIPL1Q96JK4 782 aa15.97■□□□□ 0.15
VPS54-201ENST00000272322 YIPF4Q9BSR8 244 aa15.97■□□□□ 0.15
VPS54-201ENST00000272322 RPS6KA6Q9UK32 745 aa15.97■□□□□ 0.15
VPS54-201ENST00000272322 MAN2B2Q9Y2E5 1009 aa15.97■□□□□ 0.15
VPS54-201ENST00000272322 DYRK1BQ9Y463 629 aa15.97■□□□□ 0.15
VPS54-201ENST00000272322 GRXCR2A6NFK2 248 aa15.97■□□□□ 0.15
VPS54-201ENST00000272322 CLPXO76031 633 aa15.97■□□□□ 0.15
VPS54-201ENST00000272322 PCCBP05166 539 aa15.97■□□□□ 0.15
VPS54-201ENST00000272322 DBTP11182 482 aaKnown RBP15.97■□□□□ 0.15
VPS54-201ENST00000272322 CLK1P49759 484 aaKnown RBP15.97■□□□□ 0.15
VPS54-201ENST00000272322 CRISP3P54108 245 aa15.97■□□□□ 0.15
VPS54-201ENST00000272322 NPRL3Q12980 569 aa15.97■□□□□ 0.15
VPS54-201ENST00000272322 CAPN13Q6MZZ7 669 aaPredicted RBP15.97■□□□□ 0.15
VPS54-201ENST00000272322 SLC16A12Q6ZSM3 486 aa15.97■□□□□ 0.15
VPS54-201ENST00000272322 ZNF420Q8TAQ5 688 aaPredicted RBP15.97■□□□□ 0.15
VPS54-201ENST00000272322 PPCDCQ96CD2 204 aa15.97■□□□□ 0.15
VPS54-201ENST00000272322 F2RL3Q96RI0 385 aa15.97■□□□□ 0.15
VPS54-201ENST00000272322 IL4I1Q96RQ9 567 aa15.97■□□□□ 0.15
VPS54-201ENST00000272322 TRNAU1APQ9NX07 287 aaKnown RBP15.97■□□□□ 0.15
VPS54-201ENST00000272322 TAC3Q9UHF0 121 aa15.97■□□□□ 0.15
VPS54-201ENST00000272322 H7BY64 318 aa15.96■□□□□ 0.15
VPS54-201ENST00000272322 PCDH8O95206 1070 aa15.96■□□□□ 0.15
VPS54-201ENST00000272322 IGFBP1P08833 259 aaPredicted RBP15.96■□□□□ 0.15
VPS54-201ENST00000272322 ZNF8P17098 575 aaPredicted RBP15.96■□□□□ 0.15
VPS54-201ENST00000272322 DMC1Q14565 340 aa15.96■□□□□ 0.15
VPS54-201ENST00000272322 LIPJQ5W064 366 aa15.96■□□□□ 0.15
VPS54-201ENST00000272322 IGFN1Q86VF2 1251 aa15.96■□□□□ 0.15
VPS54-201ENST00000272322 EXOSC8Q96B26 276 aaKnown RBP15.96■□□□□ 0.15
VPS54-201ENST00000272322 RSPRY1Q96DX4 576 aa15.96■□□□□ 0.15
VPS54-201ENST00000272322 PRAP1Q96NZ9 151 aa15.96■□□□□ 0.15
VPS54-201ENST00000272322 C8orf4Q9NR00 106 aa15.96■□□□□ 0.15
VPS54-201ENST00000272322 ADPRHL2Q9NX46 363 aa15.96■□□□□ 0.15
VPS54-201ENST00000272322 GPR83Q9NYM4 423 aa15.96■□□□□ 0.15
VPS54-201ENST00000272322 TRIM64A6NGJ6 449 aa15.96■□□□□ 0.15
VPS54-201ENST00000272322 PCDH17O14917 1159 aa15.96■□□□□ 0.15
VPS54-201ENST00000272322 PRKRAO75569 313 aaKnown RBP15.96■□□□□ 0.15
VPS54-201ENST00000272322 C1orf105O95561 183 aa15.96■□□□□ 0.15
VPS54-201ENST00000272322 GPX2P18283 190 aa15.96■□□□□ 0.15
VPS54-201ENST00000272322 ZNF829Q3KNS6 432 aaPredicted RBP15.96■□□□□ 0.15
VPS54-201ENST00000272322 METTL3Q86U44 580 aaKnown RBP15.96■□□□□ 0.15
VPS54-201ENST00000272322 TRAM1L1Q8N609 369 aa15.96■□□□□ 0.15
VPS54-201ENST00000272322 DOK4Q8TEW6 326 aa15.96■□□□□ 0.15
VPS54-201ENST00000272322 RC3H2Q9HBD1 1191 aaKnown RBP15.96■□□□□ 0.15
VPS54-201ENST00000272322 TM9SF3Q9HD45 589 aa15.96■□□□□ 0.15
VPS54-201ENST00000272322 KLHL20Q9Y2M5 609 aa15.96■□□□□ 0.15
VPS54-201ENST00000272322 PRAMEF33A0A0G2JMD5 474 aa15.96■□□□□ 0.14
VPS54-201ENST00000272322 PNMA8CA0A1B0GUJ8 204 aa15.96■□□□□ 0.14
VPS54-201ENST00000272322 C6P13671 934 aa15.96■□□□□ 0.14
VPS54-201ENST00000272322 FPR1P21462 350 aa15.96■□□□□ 0.14
VPS54-201ENST00000272322 CD6P30203 668 aa15.96■□□□□ 0.14
VPS54-201ENST00000272322 SEPHS1P49903 392 aa15.96■□□□□ 0.14
VPS54-201ENST00000272322 CLCA4Q14CN2 919 aa15.96■□□□□ 0.14
VPS54-201ENST00000272322 PRSS36Q5K4E3 855 aa15.96■□□□□ 0.14
VPS54-201ENST00000272322 SLCO4C1Q6ZQN7 724 aa15.96■□□□□ 0.14
VPS54-201ENST00000272322 C11orf65Q8NCR3 313 aa15.96■□□□□ 0.14
VPS54-201ENST00000272322 PJA1Q8NG27 643 aa15.96■□□□□ 0.14
VPS54-201ENST00000272322 BORCS5Q969J3 196 aa15.96■□□□□ 0.14
VPS54-201ENST00000272322 C6orf62Q9GZU0 229 aaPredicted RBP15.96■□□□□ 0.14
VPS54-201ENST00000272322 CUEDC1Q9NWM3 386 aaPredicted RBP15.96■□□□□ 0.14
VPS54-201ENST00000272322 DAPK2Q9UIK4 370 aa15.96■□□□□ 0.14
VPS54-201ENST00000272322 TMED5Q9Y3A6 229 aa15.96■□□□□ 0.14
VPS54-201ENST00000272322 OR1A2Q9Y585 309 aa15.96■□□□□ 0.14
VPS54-201ENST00000272322 PIPSLA2A3N6 862 aa15.95■□□□□ 0.14
VPS54-201ENST00000272322 ARHGEF15O94989 841 aa15.95■□□□□ 0.14
VPS54-201ENST00000272322 HPRP00739 348 aa15.95■□□□□ 0.14
VPS54-201ENST00000272322 MPC1LP0DKB6 136 aa15.95■□□□□ 0.14
VPS54-201ENST00000272322 CD36P16671 472 aa15.95■□□□□ 0.14
VPS54-201ENST00000272322 TIA1P31483 386 aaKnown RBP eCLIP15.95■□□□□ 0.143e-6■■■□□ 18.3
VPS54-201ENST00000272322 TRPC1P48995 793 aa15.95■□□□□ 0.14
VPS54-201ENST00000272322 RPS3AP61247 264 aaKnown RBP15.95■□□□□ 0.14
VPS54-201ENST00000272322 EXOC3L2Q2M3D2 409 aa15.95■□□□□ 0.14
VPS54-201ENST00000272322 SERPINA11Q86U17 422 aa15.95■□□□□ 0.14
VPS54-201ENST00000272322 MRPL43Q8N983 215 aaKnown RBP15.95■□□□□ 0.14
VPS54-201ENST00000272322 LGR4Q9BXB1 951 aa15.95■□□□□ 0.14
VPS54-201ENST00000272322 SLC23A2Q9UGH3 650 aa15.95■□□□□ 0.14
VPS54-201ENST00000272322 TRPM6Q9BX84 2022 aa15.95■□□□□ 0.14
VPS54-201ENST00000272322 RGS10O43665 173 aa15.95■□□□□ 0.14
VPS54-201ENST00000272322 PSIP1O75475 530 aaKnown RBP15.95■□□□□ 0.14
VPS54-201ENST00000272322 GCM2O75603 506 aaPredicted RBP15.95■□□□□ 0.14
VPS54-201ENST00000272322 FUCA1P04066 466 aa15.95■□□□□ 0.14
VPS54-201ENST00000272322 HPCAL1P37235 193 aa15.95■□□□□ 0.14
VPS54-201ENST00000272322 TMBIM6P55061 237 aa15.95■□□□□ 0.14
VPS54-201ENST00000272322 TAP2Q03519 686 aa15.95■□□□□ 0.14
VPS54-201ENST00000272322 EIF3MQ7L2H7 374 aaKnown RBP15.95■□□□□ 0.14
VPS54-201ENST00000272322 BCDIN3DQ7Z5W3 292 aaKnown RBP15.95■□□□□ 0.14
VPS54-201ENST00000272322 FKBP10Q96AY3 582 aa15.95■□□□□ 0.14
VPS54-201ENST00000272322 ARRDC3Q96B67 414 aa15.95■□□□□ 0.14
VPS54-201ENST00000272322 APOL4Q9BPW4 351 aa15.95■□□□□ 0.14
VPS54-201ENST00000272322 ZBTB20Q9HC78 741 aaPredicted RBP15.95■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms