RNA–Protein interactions for RNA: ENST00000262554.6

SPTLC1-201, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC1, Length 1,894 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-201ENST00000262554 RHBGQ9H310 441 aa12.4□□□□□ -0.42
SPTLC1-201ENST00000262554 TOR3AQ9H497 397 aa12.4□□□□□ -0.42
SPTLC1-201ENST00000262554 OSGEPL1Q9H4B0 414 aa12.4□□□□□ -0.42
SPTLC1-201ENST00000262554 SMURF2Q9HAU4 748 aa12.4□□□□□ -0.42
SPTLC1-201ENST00000262554 IL1RAPQ9NPH3 570 aa12.4□□□□□ -0.42
SPTLC1-201ENST00000262554 WASH6PQ9NQA3 447 aa12.4□□□□□ -0.42
SPTLC1-201ENST00000262554 LMCD1Q9NZU5 365 aa12.4□□□□□ -0.42
SPTLC1-201ENST00000262554 BAG5Q9UL15 447 aa12.4□□□□□ -0.42
SPTLC1-201ENST00000262554 ORC6Q9Y5N6 252 aa12.4□□□□□ -0.42
SPTLC1-201ENST00000262554 AP1M2Q9Y6Q5 423 aa12.4□□□□□ -0.42
SPTLC1-201ENST00000262554 TRIM64A6NGJ6 449 aa12.4□□□□□ -0.42
SPTLC1-201ENST00000262554 PLRG1O43660 514 aaKnown RBP12.4□□□□□ -0.42
SPTLC1-201ENST00000262554 SLC34A2O95436 690 aa12.4□□□□□ -0.42
SPTLC1-201ENST00000262554 DNTTP04053 509 aa12.4□□□□□ -0.42
SPTLC1-201ENST00000262554 SERPINB1P30740 379 aa12.4□□□□□ -0.42
SPTLC1-201ENST00000262554 NTSR1P30989 418 aa12.4□□□□□ -0.42
SPTLC1-201ENST00000262554 GAB1Q13480 694 aa12.4□□□□□ -0.42
SPTLC1-201ENST00000262554 PLCL1Q15111 1095 aa12.4□□□□□ -0.42
SPTLC1-201ENST00000262554 TEAD4Q15561 434 aa12.4□□□□□ -0.42
SPTLC1-201ENST00000262554 CCNYL2Q5T2Q4 361 aa12.4□□□□□ -0.42
SPTLC1-201ENST00000262554 KIAA1211LQ6NV74 962 aa12.4□□□□□ -0.42
SPTLC1-201ENST00000262554 CBLL1Q75N03 491 aa12.4□□□□□ -0.42
SPTLC1-201ENST00000262554 MTSS1LQ765P7 747 aa12.4□□□□□ -0.42
SPTLC1-201ENST00000262554 EIF3MQ7L2H7 374 aaKnown RBP12.4□□□□□ -0.42
SPTLC1-201ENST00000262554 VN1R5Q7Z5H4 357 aa12.4□□□□□ -0.42
SPTLC1-201ENST00000262554 SLC9B2Q86UD5 537 aa12.4□□□□□ -0.42
SPTLC1-201ENST00000262554 OR4K1Q8NGD4 311 aa12.4□□□□□ -0.42
SPTLC1-201ENST00000262554 OR14C36Q8NHC7 312 aa12.4□□□□□ -0.42
SPTLC1-201ENST00000262554 TBC1D20Q96BZ9 403 aa12.4□□□□□ -0.42
SPTLC1-201ENST00000262554 NMD3Q96D46 503 aaKnown RBP12.4□□□□□ -0.42
SPTLC1-201ENST00000262554 RIPOR3Q96MK2 946 aa12.4□□□□□ -0.42
SPTLC1-201ENST00000262554 MUS81Q96NY9 551 aa12.4□□□□□ -0.42
SPTLC1-201ENST00000262554 FERD3LQ96RJ6 166 aa12.4□□□□□ -0.42
SPTLC1-201ENST00000262554 TIMM29Q9BSF4 260 aa12.4□□□□□ -0.42
SPTLC1-201ENST00000262554 PITHD1Q9GZP4 211 aaPredicted RBP12.4□□□□□ -0.42
SPTLC1-201ENST00000262554 RMI1Q9H9A7 625 aa12.4□□□□□ -0.42
SPTLC1-201ENST00000262554 A0A1W2PQU0 124 aa12.39□□□□□ -0.43
SPTLC1-201ENST00000262554 TRIM64CA6NLI5 447 aa12.39□□□□□ -0.43
SPTLC1-201ENST00000262554 HS6ST1O60243 411 aa12.39□□□□□ -0.43
SPTLC1-201ENST00000262554 NOBOXO60393 691 aa12.39□□□□□ -0.43
SPTLC1-201ENST00000262554 GPR37L1O60883 481 aa12.39□□□□□ -0.43
SPTLC1-201ENST00000262554 SEMA3DO95025 777 aa12.39□□□□□ -0.43
SPTLC1-201ENST00000262554 FKBP9O95302 570 aa12.39□□□□□ -0.43
SPTLC1-201ENST00000262554 NTRK1P04629 796 aa12.39□□□□□ -0.43
SPTLC1-201ENST00000262554 FABP3P05413 133 aa12.39□□□□□ -0.43
SPTLC1-201ENST00000262554 ETS2P15036 469 aa12.39□□□□□ -0.43
SPTLC1-201ENST00000262554 PCGF2P35227 344 aa12.39□□□□□ -0.43
SPTLC1-201ENST00000262554 ARHGDIAP52565 204 aa12.39□□□□□ -0.43
SPTLC1-201ENST00000262554 ESRRGP62508 458 aa12.39□□□□□ -0.43
SPTLC1-201ENST00000262554 HBA1P69905 142 aa12.39□□□□□ -0.43
SPTLC1-201ENST00000262554 MC1RQ01726 317 aa12.39□□□□□ -0.43
SPTLC1-201ENST00000262554 RFX4Q33E94 735 aa12.39□□□□□ -0.43
SPTLC1-201ENST00000262554 DDX59Q5T1V6 619 aaKnown RBP eCLIP12.39□□□□□ -0.43
SPTLC1-201ENST00000262554 OR2T5Q6IEZ7 315 aa12.39□□□□□ -0.43
SPTLC1-201ENST00000262554 SHQ1Q6PI26 577 aaKnown RBP12.39□□□□□ -0.43
SPTLC1-201ENST00000262554 ANGPTL8Q6UXH0 198 aa12.39□□□□□ -0.43
SPTLC1-201ENST00000262554 HS3ST5Q8IZT8 346 aa12.39□□□□□ -0.43
SPTLC1-201ENST00000262554 C11orf65Q8NCR3 313 aa12.39□□□□□ -0.43
SPTLC1-201ENST00000262554 ABHD11Q8NFV4 315 aa12.39□□□□□ -0.43
SPTLC1-201ENST00000262554 OR2T29Q8NH02 315 aa12.39□□□□□ -0.43
SPTLC1-201ENST00000262554 C12orf66Q96MD2 445 aa12.39□□□□□ -0.43
SPTLC1-201ENST00000262554 SLC35A5Q9BS91 424 aa12.39□□□□□ -0.43
SPTLC1-201ENST00000262554 MENTQ9BUN1 341 aa12.39□□□□□ -0.43
SPTLC1-201ENST00000262554 SLC17A9Q9BYT1 436 aa12.39□□□□□ -0.43
SPTLC1-201ENST00000262554 ING2Q9H160 280 aa12.39□□□□□ -0.43
SPTLC1-201ENST00000262554 S1PR5Q9H228 398 aa12.39□□□□□ -0.43
SPTLC1-201ENST00000262554 FBRSQ9HAH7 460 aa12.39□□□□□ -0.43
SPTLC1-201ENST00000262554 TM9SF3Q9HD45 589 aa12.39□□□□□ -0.43
SPTLC1-201ENST00000262554 VCX3AQ9NNX9 186 aa12.39□□□□□ -0.43
SPTLC1-201ENST00000262554 FAM118AQ9NWS6 357 aa12.39□□□□□ -0.43
SPTLC1-201ENST00000262554 ADPRHL2Q9NX46 363 aa12.39□□□□□ -0.43
SPTLC1-201ENST00000262554 C3orf18Q9UK00 162 aa12.39□□□□□ -0.43
SPTLC1-201ENST00000262554 FAF1Q9UNN5 650 aaPredicted RBP12.39□□□□□ -0.43
SPTLC1-201ENST00000262554 ATG2BQ96BY7 2078 aa12.39□□□□□ -0.43
SPTLC1-201ENST00000262554 C5orf42Q9H799 3197 aa12.38□□□□□ -0.43
SPTLC1-201ENST00000262554 KCNJ13O60928 360 aa12.38□□□□□ -0.43
SPTLC1-201ENST00000262554 RNGTTO60942 597 aaKnown RBP12.38□□□□□ -0.43
SPTLC1-201ENST00000262554 KLHL18O94889 574 aa12.38□□□□□ -0.43
SPTLC1-201ENST00000262554 C6orf47O95873 294 aa12.38□□□□□ -0.43
SPTLC1-201ENST00000262554 SEMG1P04279 462 aa12.38□□□□□ -0.43
SPTLC1-201ENST00000262554 IL3P08700 152 aa12.38□□□□□ -0.43
SPTLC1-201ENST00000262554 CRATP43155 626 aa12.38□□□□□ -0.43
SPTLC1-201ENST00000262554 RAD23AP54725 363 aa12.38□□□□□ -0.43
SPTLC1-201ENST00000262554 REEP5Q00765 189 aa12.38□□□□□ -0.43
SPTLC1-201ENST00000262554 ADAM15Q13444 863 aa12.38□□□□□ -0.43
SPTLC1-201ENST00000262554 TMEM259Q4ZIN3 620 aa12.38□□□□□ -0.43
SPTLC1-201ENST00000262554 KHDRBS2Q5VWX1 349 aaKnown RBP12.38□□□□□ -0.43
SPTLC1-201ENST00000262554 DUS1LQ6P1R4 473 aaKnown RBP12.38□□□□□ -0.43
SPTLC1-201ENST00000262554 B3GNT6Q6ZMB0 384 aa12.38□□□□□ -0.43
SPTLC1-201ENST00000262554 TMEM26Q6ZUK4 368 aa12.38□□□□□ -0.43
SPTLC1-201ENST00000262554 PAGE2Q7Z2X7 111 aa12.38□□□□□ -0.43
SPTLC1-201ENST00000262554 TMEM179BQ7Z7N9 219 aa12.38□□□□□ -0.43
SPTLC1-201ENST00000262554 GALNT10Q86SR1 603 aa12.38□□□□□ -0.43
SPTLC1-201ENST00000262554 C8orf59Q8N0T1 100 aaPredicted RBP12.38□□□□□ -0.43
SPTLC1-201ENST00000262554 ARL10Q8N8L6 244 aa12.38□□□□□ -0.43
SPTLC1-201ENST00000262554 ZFAND2BQ8WV99 257 aa12.38□□□□□ -0.43
SPTLC1-201ENST00000262554 EZH1Q92800 747 aaPredicted RBP12.38□□□□□ -0.43
SPTLC1-201ENST00000262554 CIDECQ96AQ7 238 aaPredicted RBP12.38□□□□□ -0.43
SPTLC1-201ENST00000262554 HSH2DQ96JZ2 352 aa12.38□□□□□ -0.43
SPTLC1-201ENST00000262554 MKRN2Q9H000 416 aaKnown RBP12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 55.2 ms