RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 EIF4A2Q14240 407 aaKnown RBP22.64■■□□□ 1.21
CLN3-264ENST00000637985 USPL1Q5W0Q7 1092 aa22.64■■□□□ 1.21
CLN3-264ENST00000637985 TJP1Q07157 1748 aa22.64■■□□□ 1.21
CLN3-264ENST00000637985 CNTNAP1P78357 1384 aa22.63■■□□□ 1.21
CLN3-264ENST00000637985 NRXN2Q9P2S2 1712 aa22.63■■□□□ 1.21
CLN3-264ENST00000637985 ZPR1O75312 459 aa22.63■■□□□ 1.21
CLN3-264ENST00000637985 CTCFP49711 727 aaPredicted RBP22.63■■□□□ 1.21
CLN3-264ENST00000637985 NFIXQ14938 502 aa22.62■■□□□ 1.21
CLN3-264ENST00000637985 PLEKHO1Q53GL0 409 aaPredicted RBP22.61■■□□□ 1.21
CLN3-264ENST00000637985 ZNF530Q6P9A1 599 aaPredicted RBP22.6■■□□□ 1.21
CLN3-264ENST00000637985 C2CD5Q86YS7 1000 aa22.6■■□□□ 1.21
CLN3-264ENST00000637985 NFATC2IPQ8NCF5 419 aa22.6■■□□□ 1.21
CLN3-264ENST00000637985 PCDH10Q9P2E7 1040 aa22.6■■□□□ 1.21
CLN3-264ENST00000637985 DICER1Q9UPY3 1922 aaKnown RBP22.59■■□□□ 1.21
CLN3-264ENST00000637985 POTEIP0CG38 1075 aa22.59■■□□□ 1.21
CLN3-264ENST00000637985 POTEJP0CG39 1038 aa22.59■■□□□ 1.21
CLN3-264ENST00000637985 MTHFSP49914 203 aa22.59■■□□□ 1.21
CLN3-264ENST00000637985 CDCA8Q53HL2 280 aa22.59■■□□□ 1.21
CLN3-264ENST00000637985 AIDAQ96BJ3 306 aa22.59■■□□□ 1.21
CLN3-264ENST00000637985 SOS1Q07889 1333 aaPredicted RBP22.58■■□□□ 1.21
CLN3-264ENST00000637985 FAM161AQ3B820 660 aa22.58■■□□□ 1.21
CLN3-264ENST00000637985 NARFQ9UHQ1 456 aa22.58■■□□□ 1.21
CLN3-264ENST00000637985 PASKQ96RG2 1323 aa22.57■■□□□ 1.2
CLN3-264ENST00000637985 H0YIN7 160 aa22.57■■□□□ 1.2
CLN3-264ENST00000637985 SERPINB2P05120 415 aa22.57■■□□□ 1.2
CLN3-264ENST00000637985 ERFEQ4G0M1 354 aa22.57■■□□□ 1.2
CLN3-264ENST00000637985 AMOTQ4VCS5 1084 aa22.57■■□□□ 1.2
CLN3-264ENST00000637985 WBP1LQ9NX94 342 aa22.57■■□□□ 1.2
CLN3-264ENST00000637985 VEGFBP49765 207 aa22.56■■□□□ 1.2
CLN3-264ENST00000637985 ABHD8Q96I13 439 aa22.56■■□□□ 1.2
CLN3-264ENST00000637985 LBX1P52954 281 aa22.55■■□□□ 1.2
CLN3-264ENST00000637985 DNAJC10Q8IXB1 793 aa22.55■■□□□ 1.2
CLN3-264ENST00000637985 BCL2L12Q9HB09 334 aa22.55■■□□□ 1.2
CLN3-264ENST00000637985 FER1L6Q2WGJ9 1857 aa22.54■■□□□ 1.2
CLN3-264ENST00000637985 CARMIL3Q8ND23 1372 aa22.54■■□□□ 1.2
CLN3-264ENST00000637985 VIRMAQ69YN4 1812 aaKnown RBP22.54■■□□□ 1.2
CLN3-264ENST00000637985 DDNO94850 711 aaPredicted RBP22.53■■□□□ 1.2
CLN3-264ENST00000637985 CYP19A1P11511 503 aaPredicted RBP22.52■■□□□ 1.2
CLN3-264ENST00000637985 C1orf141Q5JVX7 400 aa22.52■■□□□ 1.2
CLN3-264ENST00000637985 COL15A1P39059 1388 aa22.51■■□□□ 1.19
CLN3-264ENST00000637985 C21orf2O43822 256 aa22.51■■□□□ 1.19
CLN3-264ENST00000637985 LDHDQ86WU2 507 aa22.51■■□□□ 1.19
CLN3-264ENST00000637985 LTBP3Q9NS15 1303 aa22.51■■□□□ 1.19
CLN3-264ENST00000637985 TMEM88BA6NKF7 163 aa22.5■■□□□ 1.19
CLN3-264ENST00000637985 CLSPNQ9HAW4 1339 aa22.5■■□□□ 1.19
CLN3-264ENST00000637985 ITGBL1O95965 494 aaPredicted RBP22.49■■□□□ 1.19
CLN3-264ENST00000637985 HSPA8P11142 646 aaKnown RBP22.49■■□□□ 1.19
CLN3-264ENST00000637985 TIMELESSQ9UNS1 1208 aa22.49■■□□□ 1.19
CLN3-264ENST00000637985 IQCA1LA6NCM1 817 aa22.48■■□□□ 1.19
CLN3-264ENST00000637985 TNNT2P45379 298 aaPredicted RBP22.48■■□□□ 1.19
CLN3-264ENST00000637985 ZNF622Q969S3 477 aaKnown RBP eCLIP22.48■■□□□ 1.19
CLN3-264ENST00000637985 TAOK3Q9H2K8 898 aa22.48■■□□□ 1.19
CLN3-264ENST00000637985 PDZRN3Q9UPQ7 1066 aa22.48■■□□□ 1.19
CLN3-264ENST00000637985 ZBTB1Q9Y2K1 713 aa22.48■■□□□ 1.19
CLN3-264ENST00000637985 SCN11AQ9UI33 1791 aa22.48■■□□□ 1.19
CLN3-264ENST00000637985 ANKRD31Q8N7Z5 1873 aa22.47■■□□□ 1.19
CLN3-264ENST00000637985 RGS19P49795 217 aa22.47■■□□□ 1.19
CLN3-264ENST00000637985 AEBP1Q8IUX7 1158 aa22.47■■□□□ 1.19
CLN3-264ENST00000637985 ZNF219Q9P2Y4 722 aaPredicted RBP22.47■■□□□ 1.19
CLN3-264ENST00000637985 SCN4AP35499 1836 aa22.46■■□□□ 1.19
CLN3-264ENST00000637985 MLLT1Q03111 559 aaPredicted RBP22.46■■□□□ 1.19
CLN3-264ENST00000637985 L3MBTL3Q96JM7 780 aaPredicted RBP22.46■■□□□ 1.19
CLN3-264ENST00000637985 BRIP1Q9BX63 1249 aa22.46■■□□□ 1.19
CLN3-264ENST00000637985 TAF1DQ9H5J8 278 aaPredicted RBP22.46■■□□□ 1.19
CLN3-264ENST00000637985 PDE6BP35913 854 aa22.45■■□□□ 1.18
CLN3-264ENST00000637985 RASSF10A6NK89 507 aa22.44■■□□□ 1.18
CLN3-264ENST00000637985 COL11A2P13942 1736 aaPredicted RBP22.43■■□□□ 1.18
CLN3-264ENST00000637985 BICDL1Q6ZP65 573 aa22.43■■□□□ 1.18
CLN3-264ENST00000637985 PCGF6Q9BYE7 350 aa22.43■■□□□ 1.18
CLN3-264ENST00000637985 SLC52A2Q9HAB3 445 aa22.43■■□□□ 1.18
CLN3-264ENST00000637985 MAP2K1Q02750 393 aaPredicted RBP22.42■■□□□ 1.18
CLN3-264ENST00000637985 DEFB115Q30KQ5 88 aa22.42■■□□□ 1.18
CLN3-264ENST00000637985 SLC39A6Q13433 755 aa22.41■■□□□ 1.18
CLN3-264ENST00000637985 SLX4Q8IY92 1834 aa22.41■■□□□ 1.18
CLN3-264ENST00000637985 WDR33Q9C0J8 1336 aaKnown RBP22.4■■□□□ 1.18
CLN3-264ENST00000637985 TBC1D9BQ66K14 1250 aa22.4■■□□□ 1.18
CLN3-264ENST00000637985 PRR5LQ6MZQ0 368 aa22.4■■□□□ 1.18
CLN3-264ENST00000637985 LGR6Q9HBX8 967 aa22.4■■□□□ 1.18
CLN3-264ENST00000637985 CCDC85CA6NKD9 419 aa22.39■■□□□ 1.17
CLN3-264ENST00000637985 CANXP27824 592 aaKnown RBP22.39■■□□□ 1.17
CLN3-264ENST00000637985 EIF5P55010 431 aaKnown RBP22.39■■□□□ 1.17
CLN3-264ENST00000637985 AKAP4Q5JQC9 854 aa22.39■■□□□ 1.17
CLN3-264ENST00000637985 SULT6B1Q6IMI4 303 aa22.39■■□□□ 1.17
CLN3-264ENST00000637985 VSIG10Q8N0Z9 540 aa22.39■■□□□ 1.17
CLN3-264ENST00000637985 CNKSR1Q969H4 720 aa22.39■■□□□ 1.17
CLN3-264ENST00000637985 ADAMTSL1Q8N6G6 1762 aa22.39■■□□□ 1.17
CLN3-264ENST00000637985 SOGA3Q5TF21 947 aa22.38■■□□□ 1.17
CLN3-264ENST00000637985 CCDC24Q8N4L8 307 aa22.38■■□□□ 1.17
CLN3-264ENST00000637985 MRC1P22897 1456 aa22.38■■□□□ 1.17
CLN3-264ENST00000637985 EAPPQ56P03 285 aaPredicted RBP22.37■■□□□ 1.17
CLN3-264ENST00000637985 STYK1Q6J9G0 422 aa22.37■■□□□ 1.17
CLN3-264ENST00000637985 PRPF40BQ6NWY9 871 aaKnown RBP22.37■■□□□ 1.17
CLN3-264ENST00000637985 A0A087WZG4 1122 aa22.36■■□□□ 1.17
CLN3-264ENST00000637985 HACL1Q9UJ83 578 aa22.36■■□□□ 1.17
CLN3-264ENST00000637985 SRGNP10124 158 aa22.35■■□□□ 1.17
CLN3-264ENST00000637985 CNTROBQ8N137 903 aa22.35■■□□□ 1.17
CLN3-264ENST00000637985 CLEC11AQ9Y240 323 aa22.35■■□□□ 1.17
CLN3-264ENST00000637985 EPHX2P34913 555 aa22.34■■□□□ 1.17
CLN3-264ENST00000637985 C7orf43Q8WVR3 580 aa22.34■■□□□ 1.17
CLN3-264ENST00000637985 ARFGEF2Q9Y6D5 1785 aa22.34■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 148.6 ms