RNA–Protein interactions for RNA: ENST00000635750.1

SCN1A-209, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,299 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-209ENST00000635750 RNF41Q9H4P4 317 aaPredicted RBP6.42□□□□□ -1.38
SCN1A-209ENST00000635750 CUX1P39880 1505 aa6.42□□□□□ -1.38
SCN1A-209ENST00000635750 BAG3O95817 575 aa6.42□□□□□ -1.38
SCN1A-209ENST00000635750 MAP4K4O95819 1239 aaPredicted RBP6.42□□□□□ -1.38
SCN1A-209ENST00000635750 GAS8O95995 478 aa6.42□□□□□ -1.38
SCN1A-209ENST00000635750 IFI16Q16666 785 aaKnown RBP6.42□□□□□ -1.38
SCN1A-209ENST00000635750 UQCRHP07919 91 aa6.41□□□□□ -1.38
SCN1A-209ENST00000635750 LRRC27Q9C0I9 530 aa6.41□□□□□ -1.38
SCN1A-209ENST00000635750 TMCO5BA8MYB1 307 aa6.41□□□□□ -1.38
SCN1A-209ENST00000635750 ZSCAN12O43309 604 aa6.41□□□□□ -1.38
SCN1A-209ENST00000635750 PPP6R1Q9UPN7 881 aa6.41□□□□□ -1.38
SCN1A-209ENST00000635750 KIF5BP33176 963 aa6.41□□□□□ -1.38
SCN1A-209ENST00000635750 DAAM2Q86T65 1068 aa6.41□□□□□ -1.38
SCN1A-209ENST00000635750 FAM114A1Q8IWE2 563 aa6.41□□□□□ -1.38
SCN1A-209ENST00000635750 PYM1Q9BRP8 204 aaKnown RBP6.41□□□□□ -1.38
SCN1A-209ENST00000635750 BIN2Q9UBW5 565 aaPredicted RBP6.41□□□□□ -1.38
SCN1A-209ENST00000635750 C6orf229H3BNL8 230 aa6.41□□□□□ -1.38
SCN1A-209ENST00000635750 ZBTB24O43167 697 aaPredicted RBP6.41□□□□□ -1.38
SCN1A-209ENST00000635750 MAP7D1Q3KQU3 841 aa6.41□□□□□ -1.38
SCN1A-209ENST00000635750 SPTY2D1Q68D10 685 aaPredicted RBP6.41□□□□□ -1.38
SCN1A-209ENST00000635750 HDAC9Q9UKV0 1011 aa6.41□□□□□ -1.38
SCN1A-209ENST00000635750 TNNT1P13805 278 aa6.41□□□□□ -1.38
SCN1A-209ENST00000635750 KANK4Q5T7N3 995 aaPredicted RBP6.41□□□□□ -1.38
SCN1A-209ENST00000635750 APBB1IPQ7Z5R6 666 aaPredicted RBP6.41□□□□□ -1.38
SCN1A-209ENST00000635750 NGLY1Q96IV0 654 aa6.41□□□□□ -1.38
SCN1A-209ENST00000635750 NUP62CLQ9H1M0 184 aa6.41□□□□□ -1.38
SCN1A-209ENST00000635750 TRAK2O60296 914 aa6.41□□□□□ -1.38
SCN1A-209ENST00000635750 RANBP6O60518 1105 aaKnown RBP6.41□□□□□ -1.38
SCN1A-209ENST00000635750 SSRP1Q08945 709 aaKnown RBP6.41□□□□□ -1.38
SCN1A-209ENST00000635750 TDRD12Q587J7 1177 aaKnown RBP6.41□□□□□ -1.38
SCN1A-209ENST00000635750 SPECC1LQ69YQ0 1117 aa6.41□□□□□ -1.38
SCN1A-209ENST00000635750 BEGAINQ9BUH8 593 aa6.41□□□□□ -1.38
SCN1A-209ENST00000635750 TCP11L1Q9NUJ3 509 aa6.41□□□□□ -1.38
SCN1A-209ENST00000635750 PANK1Q8TE04 598 aa6.41□□□□□ -1.38
SCN1A-209ENST00000635750 CCDC194A0A1B0GVG4 234 aa6.4□□□□□ -1.38
SCN1A-209ENST00000635750 PRKAR2BP31323 418 aa6.4□□□□□ -1.38
SCN1A-209ENST00000635750 HMGB1P09429 215 aaKnown RBP6.4□□□□□ -1.38
SCN1A-209ENST00000635750 KCNH5Q8NCM2 988 aa6.4□□□□□ -1.38
SCN1A-209ENST00000635750 NUP88Q99567 741 aaPredicted RBP6.4□□□□□ -1.38
SCN1A-209ENST00000635750 ZNF219Q9P2Y4 722 aaPredicted RBP6.4□□□□□ -1.38
SCN1A-209ENST00000635750 SLC12A7Q9Y666 1083 aa6.4□□□□□ -1.38
SCN1A-209ENST00000635750 A0A1W2PRG0 241 aa6.4□□□□□ -1.38
SCN1A-209ENST00000635750 HMGB1P1B2RPK0 211 aaPredicted RBP6.4□□□□□ -1.38
SCN1A-209ENST00000635750 KIF2AO00139 706 aaPredicted RBP6.4□□□□□ -1.38
SCN1A-209ENST00000635750 PHACTR2O75167 634 aa6.4□□□□□ -1.38
SCN1A-209ENST00000635750 ZNF622Q969S3 477 aaKnown RBP eCLIP6.4□□□□□ -1.38
SCN1A-209ENST00000635750 IQCGQ9H095 443 aaKnown RBP6.4□□□□□ -1.38
SCN1A-209ENST00000635750 SRGAP3O43295 1099 aa6.4□□□□□ -1.39
SCN1A-209ENST00000635750 LDHCP07864 332 aa6.4□□□□□ -1.39
SCN1A-209ENST00000635750 PSMC4P43686 418 aa6.4□□□□□ -1.39
SCN1A-209ENST00000635750 IFIT5Q13325 482 aaKnown RBP6.4□□□□□ -1.39
SCN1A-209ENST00000635750 KMT5BQ4FZB7 885 aa6.4□□□□□ -1.39
SCN1A-209ENST00000635750 SULT6B1Q6IMI4 303 aa6.4□□□□□ -1.39
SCN1A-209ENST00000635750 CWC27Q6UX04 472 aaKnown RBP6.4□□□□□ -1.39
SCN1A-209ENST00000635750 JAKMIP1Q96N16 626 aaKnown RBP6.4□□□□□ -1.39
SCN1A-209ENST00000635750 PPP1R9BQ96SB3 815 aa6.4□□□□□ -1.39
SCN1A-209ENST00000635750 MKRN1Q9UHC7 482 aaKnown RBP6.4□□□□□ -1.39
SCN1A-209ENST00000635750 ANAPC4Q9UJX5 808 aa6.4□□□□□ -1.39
SCN1A-209ENST00000635750 PDE4BQ07343 736 aa6.4□□□□□ -1.39
SCN1A-209ENST00000635750 TCERG1LQ5VWI1 586 aa6.4□□□□□ -1.39
SCN1A-209ENST00000635750 KIAA1524Q8TCG1 905 aa6.4□□□□□ -1.39
SCN1A-209ENST00000635750 GMNNO75496 209 aa6.39□□□□□ -1.39
SCN1A-209ENST00000635750 PRKCSHP14314 528 aaPredicted RBP6.39□□□□□ -1.39
SCN1A-209ENST00000635750 GSTO1P78417 241 aa6.39□□□□□ -1.39
SCN1A-209ENST00000635750 PRPF4BQ13523 1007 aaKnown RBP6.39□□□□□ -1.39
SCN1A-209ENST00000635750 KLHL10Q6JEL2 608 aa6.39□□□□□ -1.39
SCN1A-209ENST00000635750 RFC4P35249 363 aa6.39□□□□□ -1.39
SCN1A-209ENST00000635750 DDX46Q7L014 1031 aaKnown RBP6.39□□□□□ -1.39
SCN1A-209ENST00000635750 OGFOD1Q8N543 542 aa6.39□□□□□ -1.39
SCN1A-209ENST00000635750 SMC1BQ8NDV3 1235 aa6.39□□□□□ -1.39
SCN1A-209ENST00000635750 UBXN4Q92575 508 aa6.39□□□□□ -1.39
SCN1A-209ENST00000635750 FAM107BQ9H098 131 aa6.39□□□□□ -1.39
SCN1A-209ENST00000635750 NOB1Q9ULX3 412 aaKnown RBP6.39□□□□□ -1.39
SCN1A-209ENST00000635750 YEATS4O95619 227 aa6.39□□□□□ -1.39
SCN1A-209ENST00000635750 IMPG2Q9BZV3 1241 aa6.39□□□□□ -1.39
SCN1A-209ENST00000635750 HLTFQ14527 1009 aaKnown RBP eCLIP6.39□□□□□ -1.396e-7■■■■□ 22.5
SCN1A-209ENST00000635750 ERMNQ8TAM6 284 aa6.39□□□□□ -1.39
SCN1A-209ENST00000635750 CACYBPQ9HB71 228 aaKnown RBP6.39□□□□□ -1.39
SCN1A-209ENST00000635750 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP6.39□□□□□ -1.39
SCN1A-209ENST00000635750 POLR3GO15318 223 aaPredicted RBP6.39□□□□□ -1.39
SCN1A-209ENST00000635750 ZNF428Q96B54 188 aa6.39□□□□□ -1.39
SCN1A-209ENST00000635750 CDC5LQ99459 802 aaKnown RBP6.39□□□□□ -1.39
SCN1A-209ENST00000635750 MYOM3Q5VTT5 1437 aa6.39□□□□□ -1.39
SCN1A-209ENST00000635750 MTIF2P46199 727 aaKnown RBP6.39□□□□□ -1.39
SCN1A-209ENST00000635750 CCDC40Q4G0X9 1142 aa6.39□□□□□ -1.39
SCN1A-209ENST00000635750 TICAM2Q86XR7 235 aa6.39□□□□□ -1.39
SCN1A-209ENST00000635750 PRAM1Q96QH2 718 aa6.39□□□□□ -1.39
SCN1A-209ENST00000635750 CDK19Q9BWU1 502 aa6.39□□□□□ -1.39
SCN1A-209ENST00000635750 GNAT3A8MTJ3 354 aa6.39□□□□□ -1.39
SCN1A-209ENST00000635750 KIF5AQ12840 1032 aa6.39□□□□□ -1.39
SCN1A-209ENST00000635750 CCDC155Q8N6L0 562 aa6.39□□□□□ -1.39
SCN1A-209ENST00000635750 CCDC85AQ96PX6 553 aaPredicted RBP6.39□□□□□ -1.39
SCN1A-209ENST00000635750 ZNF213O14771 459 aa6.38□□□□□ -1.39
SCN1A-209ENST00000635750 LPXNO60711 386 aa6.38□□□□□ -1.39
SCN1A-209ENST00000635750 TBCAO75347 108 aaKnown RBP6.38□□□□□ -1.39
SCN1A-209ENST00000635750 MSANTD4Q8NCY6 345 aa6.38□□□□□ -1.39
SCN1A-209ENST00000635750 SERPINA10Q9UK55 444 aa6.38□□□□□ -1.39
SCN1A-209ENST00000635750 DMRT2Q9Y5R5 561 aa6.38□□□□□ -1.39
SCN1A-209ENST00000635750 MAP3K11Q16584 847 aa6.38□□□□□ -1.39
SCN1A-209ENST00000635750 HAUS2Q9NVX0 235 aa6.38□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms