RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 CHD2O14647 1828 aaKnown RBP15.53■□□□□ 0.08
LINC00540-203ENST00000631321 AK9Q5TCS8 1911 aa15.53■□□□□ 0.08
LINC00540-203ENST00000631321 USP42Q9H9J4 1324 aaKnown RBP15.53■□□□□ 0.08
LINC00540-203ENST00000631321 SURF6O75683 361 aaKnown RBP15.53■□□□□ 0.08
LINC00540-203ENST00000631321 CAVIN1Q6NZI2 390 aaKnown RBP15.53■□□□□ 0.08
LINC00540-203ENST00000631321 C14orf37Q86TY3 774 aa15.53■□□□□ 0.08
LINC00540-203ENST00000631321 IL1RAPL2Q9NP60 686 aa15.53■□□□□ 0.08
LINC00540-203ENST00000631321 CHPF2Q9P2E5 772 aa15.53■□□□□ 0.08
LINC00540-203ENST00000631321 LMO7Q8WWI1 1683 aa15.52■□□□□ 0.08
LINC00540-203ENST00000631321 OVOS2A0A0G2JMS6 1433 aa15.52■□□□□ 0.08
LINC00540-203ENST00000631321 ERBB4Q15303 1308 aa15.52■□□□□ 0.08
LINC00540-203ENST00000631321 PRPF40AO75400 957 aaKnown RBP15.52■□□□□ 0.08
LINC00540-203ENST00000631321 HSPA4P34932 840 aa15.52■□□□□ 0.08
LINC00540-203ENST00000631321 GPT2Q8TD30 523 aa15.52■□□□□ 0.08
LINC00540-203ENST00000631321 EIF2S2P20042 333 aaKnown RBP15.52■□□□□ 0.07
LINC00540-203ENST00000631321 HSP90AB4PQ58FF6 505 aa15.52■□□□□ 0.07
LINC00540-203ENST00000631321 TRIM44Q96DX7 344 aaPredicted RBP15.52■□□□□ 0.07
LINC00540-203ENST00000631321 SRGAP3O43295 1099 aa15.51■□□□□ 0.07
LINC00540-203ENST00000631321 NBPF7P0C2Y1 421 aaPredicted RBP15.51■□□□□ 0.07
LINC00540-203ENST00000631321 MTX1Q13505 466 aa15.51■□□□□ 0.07
LINC00540-203ENST00000631321 NUTM1Q86Y26 1132 aa15.51■□□□□ 0.07
LINC00540-203ENST00000631321 IL25Q9H293 177 aa15.51■□□□□ 0.07
LINC00540-203ENST00000631321 ADCY9O60503 1353 aa15.51■□□□□ 0.07
LINC00540-203ENST00000631321 PI4KAP2A4QPH2 592 aa15.51■□□□□ 0.07
LINC00540-203ENST00000631321 PLEKHG5O94827 1062 aa15.51■□□□□ 0.07
LINC00540-203ENST00000631321 AMOTQ4VCS5 1084 aa15.51■□□□□ 0.07
LINC00540-203ENST00000631321 PLEKHO1Q53GL0 409 aaPredicted RBP15.51■□□□□ 0.07
LINC00540-203ENST00000631321 PI4KAP1Q8N8J0 262 aa15.51■□□□□ 0.07
LINC00540-203ENST00000631321 SGSM2O43147 1006 aa15.5■□□□□ 0.07
LINC00540-203ENST00000631321 KCNQ3O43525 872 aa15.5■□□□□ 0.07
LINC00540-203ENST00000631321 ANKLE2Q86XL3 938 aa15.5■□□□□ 0.07
LINC00540-203ENST00000631321 RAD50Q92878 1312 aa15.5■□□□□ 0.07
LINC00540-203ENST00000631321 BTBD11A6QL63 1104 aa15.49■□□□□ 0.07
LINC00540-203ENST00000631321 ZNF530Q6P9A1 599 aaPredicted RBP15.49■□□□□ 0.07
LINC00540-203ENST00000631321 HEG1Q9ULI3 1381 aa15.49■□□□□ 0.07
LINC00540-203ENST00000631321 CRYBG1Q9Y4K1 1723 aa15.49■□□□□ 0.07
LINC00540-203ENST00000631321 NCLP19338 710 aaKnown RBP15.49■□□□□ 0.07
LINC00540-203ENST00000631321 PSME1Q06323 249 aa15.49■□□□□ 0.07
LINC00540-203ENST00000631321 TEFQ10587 303 aa15.49■□□□□ 0.07
LINC00540-203ENST00000631321 LMTK3Q96Q04 1460 aa15.48■□□□□ 0.07
LINC00540-203ENST00000631321 RNMTO43148 476 aaKnown RBP15.48■□□□□ 0.07
LINC00540-203ENST00000631321 MBD3O95983 291 aa15.48■□□□□ 0.07
LINC00540-203ENST00000631321 ANP32BQ92688 251 aaKnown RBP15.48■□□□□ 0.07
LINC00540-203ENST00000631321 SLIT3O75094 1523 aa15.48■□□□□ 0.07
LINC00540-203ENST00000631321 TTC41PQ6P2S7 1318 aa15.48■□□□□ 0.07
LINC00540-203ENST00000631321 ALDH1L1O75891 902 aa15.48■□□□□ 0.07
LINC00540-203ENST00000631321 ARHGEF25Q86VW2 580 aa15.48■□□□□ 0.07
LINC00540-203ENST00000631321 CNTROBQ8N137 903 aa15.48■□□□□ 0.07
LINC00540-203ENST00000631321 DBF4Q9UBU7 674 aaPredicted RBP15.48■□□□□ 0.07
LINC00540-203ENST00000631321 LSG1Q9H089 658 aaKnown RBP15.47■□□□□ 0.07
LINC00540-203ENST00000631321 ESCO1Q5FWF5 840 aa15.47■□□□□ 0.07
LINC00540-203ENST00000631321 LRRC59Q96AG4 307 aaKnown RBP15.47■□□□□ 0.07
LINC00540-203ENST00000631321 UPF3BQ9BZI7 483 aaKnown RBP15.47■□□□□ 0.07
LINC00540-203ENST00000631321 RBSNQ9H1K0 784 aa15.46■□□□□ 0.07
LINC00540-203ENST00000631321 GLRX3O76003 335 aaKnown RBP15.46■□□□□ 0.07
LINC00540-203ENST00000631321 PRIM1P49642 420 aaKnown RBP15.46■□□□□ 0.07
LINC00540-203ENST00000631321 MPRIPQ6WCQ1 1025 aa15.46■□□□□ 0.07
LINC00540-203ENST00000631321 TTC14Q96N46 770 aa15.46■□□□□ 0.07
LINC00540-203ENST00000631321 TMEM63CQ9P1W3 806 aa15.46■□□□□ 0.07
LINC00540-203ENST00000631321 RBM27Q9P2N5 1060 aaKnown RBP15.46■□□□□ 0.07
LINC00540-203ENST00000631321 PXDNQ92626 1479 aa15.46■□□□□ 0.06
LINC00540-203ENST00000631321 GIGYF1O75420 1035 aaPredicted RBP15.45■□□□□ 0.06
LINC00540-203ENST00000631321 GCP02774 474 aa15.45■□□□□ 0.06
LINC00540-203ENST00000631321 HS1BP3Q53T59 392 aa15.45■□□□□ 0.06
LINC00540-203ENST00000631321 LRSAM1Q6UWE0 723 aa15.45■□□□□ 0.06
LINC00540-203ENST00000631321 CHAMP1Q96JM3 812 aa15.45■□□□□ 0.06
LINC00540-203ENST00000631321 PDLIM2Q96JY6 352 aa15.45■□□□□ 0.06
LINC00540-203ENST00000631321 SNX14Q9Y5W7 946 aa15.45■□□□□ 0.06
LINC00540-203ENST00000631321 ZNF142P52746 1687 aaPredicted RBP15.45■□□□□ 0.06
LINC00540-203ENST00000631321 CAMTA1Q9Y6Y1 1673 aa15.45■□□□□ 0.06
LINC00540-203ENST00000631321 MAP4K4O95819 1239 aaPredicted RBP15.45■□□□□ 0.06
LINC00540-203ENST00000631321 HDAC5Q9UQL6 1122 aa15.45■□□□□ 0.06
LINC00540-203ENST00000631321 ANXA1P04083 346 aa15.44■□□□□ 0.06
LINC00540-203ENST00000631321 C1orf141Q5JVX7 400 aa15.44■□□□□ 0.06
LINC00540-203ENST00000631321 KSR2Q6VAB6 950 aa15.44■□□□□ 0.06
LINC00540-203ENST00000631321 NSFL1CQ9UNZ2 370 aaKnown RBP15.44■□□□□ 0.06
LINC00540-203ENST00000631321 ZSCAN30Q86W11 494 aa15.44■□□□□ 0.06
LINC00540-203ENST00000631321 WDR33Q9C0J8 1336 aaKnown RBP15.44■□□□□ 0.06
LINC00540-203ENST00000631321 RGPD2P0DJD1 1756 aa15.44■□□□□ 0.06
LINC00540-203ENST00000631321 FOXD4L5Q5VV16 416 aaPredicted RBP15.43■□□□□ 0.06
LINC00540-203ENST00000631321 ERC1Q8IUD2 1116 aa15.43■□□□□ 0.06
LINC00540-203ENST00000631321 FOXD4L4Q8WXT5 416 aaPredicted RBP15.43■□□□□ 0.06
LINC00540-203ENST00000631321 MAP3K2Q9Y2U5 619 aa15.43■□□□□ 0.06
LINC00540-203ENST00000631321 NOL8Q76FK4 1167 aaKnown RBP15.43■□□□□ 0.06
LINC00540-203ENST00000631321 RBM33Q96EV2 1170 aaKnown RBP15.43■□□□□ 0.06
LINC00540-203ENST00000631321 UTYO14607 1347 aa15.43■□□□□ 0.06
LINC00540-203ENST00000631321 CLASRPQ8N2M8 674 aaKnown RBP15.42■□□□□ 0.06
LINC00540-203ENST00000631321 ANKRD24Q8TF21 1146 aa15.42■□□□□ 0.06
LINC00540-203ENST00000631321 KCNB2Q92953 911 aa15.42■□□□□ 0.06
LINC00540-203ENST00000631321 HYPKQ9NX55 129 aa15.42■□□□□ 0.06
LINC00540-203ENST00000631321 ADAMTS7Q9UKP4 1686 aa15.42■□□□□ 0.06
LINC00540-203ENST00000631321 PROSER3Q2NL68 480 aa15.42■□□□□ 0.06
LINC00540-203ENST00000631321 KIAA1211Q6ZU35 1233 aa15.42■□□□□ 0.06
LINC00540-203ENST00000631321 RASEFQ8IZ41 740 aa15.42■□□□□ 0.06
LINC00540-203ENST00000631321 TMEM87AQ8NBN3 555 aa15.42■□□□□ 0.06
LINC00540-203ENST00000631321 ECHDC1Q9NTX5 307 aa15.42■□□□□ 0.06
LINC00540-203ENST00000631321 RPAP1Q9BWH6 1393 aaPredicted RBP15.41■□□□□ 0.06
LINC00540-203ENST00000631321 ZBTB7CA1YPR0 619 aa15.41■□□□□ 0.06
LINC00540-203ENST00000631321 OS9Q13438 667 aaPredicted RBP15.41■□□□□ 0.06
LINC00540-203ENST00000631321 RUFY2Q8WXA3 655 aa15.41■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms