RNA–Protein interactions for RNA: ENST00000627000.1

CHRNA4-209, Transcript of cholinergic receptor nicotinic alpha 4 subunit, humanhuman

TSL 1 (best)

Gene CHRNA4, Length 2,192 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA4-209ENST00000627000 PDIA6Q15084 440 aa24.39■■□□□ 1.49
CHRNA4-209ENST00000627000 STRN4Q9NRL3 753 aa24.39■■□□□ 1.49
CHRNA4-209ENST00000627000 MAP3K2Q9Y2U5 619 aa24.39■■□□□ 1.49
CHRNA4-209ENST00000627000 TBC1D9Q6ZT07 1266 aa24.38■■□□□ 1.49
CHRNA4-209ENST00000627000 HSP90AB1P08238 724 aaKnown RBP24.37■■□□□ 1.49
CHRNA4-209ENST00000627000 DDX21Q9NR30 783 aaKnown RBP eCLIP24.37■■□□□ 1.49
CHRNA4-209ENST00000627000 HYPKQ9NX55 129 aa24.37■■□□□ 1.49
CHRNA4-209ENST00000627000 LARP1Q6PKG0 1096 aaKnown RBP24.36■■□□□ 1.49
CHRNA4-209ENST00000627000 KSR2Q6VAB6 950 aa24.36■■□□□ 1.49
CHRNA4-209ENST00000627000 CABP4P57796 275 aa24.36■■□□□ 1.49
CHRNA4-209ENST00000627000 ZCRB1Q8TBF4 217 aaKnown RBP24.36■■□□□ 1.49
CHRNA4-209ENST00000627000 AIMP1Q12904 312 aaKnown RBP24.35■■□□□ 1.49
CHRNA4-209ENST00000627000 CARD10Q9BWT7 1032 aa24.35■■□□□ 1.49
CHRNA4-209ENST00000627000 TTC5Q8N0Z6 440 aa24.34■■□□□ 1.49
CHRNA4-209ENST00000627000 PPP1R42Q7Z4L9 355 aa24.33■■□□□ 1.49
CHRNA4-209ENST00000627000 USP16Q9Y5T5 823 aa24.33■■□□□ 1.49
CHRNA4-209ENST00000627000 IBTKQ9P2D0 1353 aaPredicted RBP24.33■■□□□ 1.49
CHRNA4-209ENST00000627000 PCDH11XQ9BZA7 1347 aa24.33■■□□□ 1.49
CHRNA4-209ENST00000627000 PCDH11YQ9BZA8 1340 aa24.33■■□□□ 1.49
CHRNA4-209ENST00000627000 CDC45O75419 566 aa24.33■■□□□ 1.48
CHRNA4-209ENST00000627000 MYL6BP14649 208 aa24.33■■□□□ 1.48
CHRNA4-209ENST00000627000 EVA1CP58658 441 aa24.33■■□□□ 1.48
CHRNA4-209ENST00000627000 SSH3Q8TE77 659 aa24.33■■□□□ 1.48
CHRNA4-209ENST00000627000 CWF19L2Q2TBE0 894 aaKnown RBP24.32■■□□□ 1.48
CHRNA4-209ENST00000627000 LRRCC1Q9C099 1032 aa24.32■■□□□ 1.48
CHRNA4-209ENST00000627000 IL2RBP14784 551 aa24.32■■□□□ 1.48
CHRNA4-209ENST00000627000 BECN1Q14457 450 aa24.32■■□□□ 1.48
CHRNA4-209ENST00000627000 SHANK3Q9BYB0 1731 aa24.31■■□□□ 1.48
CHRNA4-209ENST00000627000 SNRPA1P09661 255 aaKnown RBP24.3■■□□□ 1.48
CHRNA4-209ENST00000627000 PIP4K2AP48426 406 aaPredicted RBP24.3■■□□□ 1.48
CHRNA4-209ENST00000627000 SDSP20132 328 aa24.3■■□□□ 1.48
CHRNA4-209ENST00000627000 POLA2Q14181 598 aa24.3■■□□□ 1.48
CHRNA4-209ENST00000627000 FMNL2Q96PY5 1086 aa24.3■■□□□ 1.48
CHRNA4-209ENST00000627000 TBC1D2Q9BYX2 928 aa24.3■■□□□ 1.48
CHRNA4-209ENST00000627000 ALDH1L1O75891 902 aa24.29■■□□□ 1.48
CHRNA4-209ENST00000627000 PDE1AP54750 535 aa24.29■■□□□ 1.48
CHRNA4-209ENST00000627000 DDX54Q8TDD1 881 aaKnown RBP24.29■■□□□ 1.48
CHRNA4-209ENST00000627000 GLI3P10071 1580 aa24.29■■□□□ 1.48
CHRNA4-209ENST00000627000 ROBO1Q9Y6N7 1651 aa24.29■■□□□ 1.48
CHRNA4-209ENST00000627000 SRGAP3O43295 1099 aa24.29■■□□□ 1.48
CHRNA4-209ENST00000627000 RBM25P49756 843 aaKnown RBP24.29■■□□□ 1.48
CHRNA4-209ENST00000627000 TSHZ3Q63HK5 1081 aa24.29■■□□□ 1.48
CHRNA4-209ENST00000627000 USP35Q9P2H5 1018 aa24.29■■□□□ 1.48
CHRNA4-209ENST00000627000 SALL3Q9BXA9 1300 aa24.28■■□□□ 1.48
CHRNA4-209ENST00000627000 DDX58O95786 925 aaKnown RBP24.28■■□□□ 1.48
CHRNA4-209ENST00000627000 XAGE3Q8WTP9 111 aa24.28■■□□□ 1.48
CHRNA4-209ENST00000627000 OSBPL3Q9H4L5 887 aa24.27■■□□□ 1.48
CHRNA4-209ENST00000627000 C9orf78Q9NZ63 289 aaPredicted RBP24.27■■□□□ 1.48
CHRNA4-209ENST00000627000 SURF6O75683 361 aaKnown RBP24.26■■□□□ 1.47
CHRNA4-209ENST00000627000 COPS6Q7L5N1 327 aa24.26■■□□□ 1.47
CHRNA4-209ENST00000627000 LRP10Q7Z4F1 713 aa24.26■■□□□ 1.47
CHRNA4-209ENST00000627000 RIC3Q7Z5B4 369 aa24.26■■□□□ 1.47
CHRNA4-209ENST00000627000 LINS1Q8NG48 757 aa24.26■■□□□ 1.47
CHRNA4-209ENST00000627000 BTG4Q9NY30 223 aa24.26■■□□□ 1.47
CHRNA4-209ENST00000627000 IL1RAPL2Q9NP60 686 aa24.25■■□□□ 1.47
CHRNA4-209ENST00000627000 NKX1-1Q15270 411 aaPredicted RBP24.25■■□□□ 1.47
CHRNA4-209ENST00000627000 IGKV5-2P06315 115 aa24.24■■□□□ 1.47
CHRNA4-209ENST00000627000 LAMB4A4D0S4 1761 aa24.23■■□□□ 1.47
CHRNA4-209ENST00000627000 ERVV-2B6SEH9 535 aa24.23■■□□□ 1.47
CHRNA4-209ENST00000627000 MX1P20591 662 aa24.23■■□□□ 1.47
CHRNA4-209ENST00000627000 TUBGCP6Q96RT7 1819 aa24.22■■□□□ 1.47
CHRNA4-209ENST00000627000 GRM8O00222 908 aa24.22■■□□□ 1.47
CHRNA4-209ENST00000627000 KIF2CQ99661 725 aa24.22■■□□□ 1.47
CHRNA4-209ENST00000627000 UBR2Q8IWV8 1755 aa24.21■■□□□ 1.47
CHRNA4-209ENST00000627000 RAB11FIP3O75154 756 aa24.2■■□□□ 1.47
CHRNA4-209ENST00000627000 MTX1Q13505 466 aa24.2■■□□□ 1.47
CHRNA4-209ENST00000627000 RHPN1Q8TCX5 695 aa24.2■■□□□ 1.47
CHRNA4-209ENST00000627000 KAZALD1Q96I82 304 aa24.2■■□□□ 1.47
CHRNA4-209ENST00000627000 SUCLG2Q96I99 432 aa24.2■■□□□ 1.47
CHRNA4-209ENST00000627000 TOGARAM1Q9Y4F4 1720 aa24.2■■□□□ 1.46
CHRNA4-209ENST00000627000 MYD88Q99836 296 aa24.2■■□□□ 1.46
CHRNA4-209ENST00000627000 SLKQ9H2G2 1235 aaPredicted RBP24.2■■□□□ 1.46
CHRNA4-209ENST00000627000 UTYO14607 1347 aa24.19■■□□□ 1.46
CHRNA4-209ENST00000627000 AHDC1Q5TGY3 1603 aaPredicted RBP24.19■■□□□ 1.46
CHRNA4-209ENST00000627000 ANKRD13DQ6ZTN6 518 aa24.19■■□□□ 1.46
CHRNA4-209ENST00000627000 NUTM1Q86Y26 1132 aa24.19■■□□□ 1.46
CHRNA4-209ENST00000627000 METTL22Q9BUU2 404 aaPredicted RBP24.19■■□□□ 1.46
CHRNA4-209ENST00000627000 PAPPAQ13219 1627 aa24.19■■□□□ 1.46
CHRNA4-209ENST00000627000 NEURL1BA8MQ27 555 aa24.19■■□□□ 1.46
CHRNA4-209ENST00000627000 KCPQ6ZWJ8 1503 aa24.19■■□□□ 1.46
CHRNA4-209ENST00000627000 LTBP4Q8N2S1 1624 aa24.18■■□□□ 1.46
CHRNA4-209ENST00000627000 STAP2Q9UGK3 403 aa24.18■■□□□ 1.46
CHRNA4-209ENST00000627000 COL14A1Q05707 1796 aaKnown RBP24.18■■□□□ 1.46
CHRNA4-209ENST00000627000 PTCD1O75127 700 aaKnown RBP24.18■■□□□ 1.46
CHRNA4-209ENST00000627000 NEXNQ0ZGT2 675 aa24.18■■□□□ 1.46
CHRNA4-209ENST00000627000 COL16A1Q07092 1604 aaPredicted RBP24.17■■□□□ 1.46
CHRNA4-209ENST00000627000 SPRYD3Q8NCJ5 442 aa24.17■■□□□ 1.46
CHRNA4-209ENST00000627000 NBPF26B4DH59 902 aa24.16■■□□□ 1.46
CHRNA4-209ENST00000627000 RTL5Q5HYW3 569 aaPredicted RBP24.16■■□□□ 1.46
CHRNA4-209ENST00000627000 NBPF14Q5TI25 921 aa24.16■■□□□ 1.46
CHRNA4-209ENST00000627000 NBPF10Q6P3W6 841 aaKnown RBP24.16■■□□□ 1.46
CHRNA4-209ENST00000627000 NBPF15Q8N660 670 aa24.16■■□□□ 1.46
CHRNA4-209ENST00000627000 KIF1BPQ96EK5 621 aa24.16■■□□□ 1.46
CHRNA4-209ENST00000627000 BICC1Q9H694 974 aaKnown RBP24.16■■□□□ 1.46
CHRNA4-209ENST00000627000 PA2G4Q9UQ80 394 aaKnown RBP24.16■■□□□ 1.46
CHRNA4-209ENST00000627000 GCKRQ14397 625 aa24.16■■□□□ 1.46
CHRNA4-209ENST00000627000 ARFGEF2Q9Y6D5 1785 aa24.16■■□□□ 1.46
CHRNA4-209ENST00000627000 COL22A1Q8NFW1 1626 aaPredicted RBP24.16■■□□□ 1.46
CHRNA4-209ENST00000627000 NFKBIBQ15653 356 aa24.15■■□□□ 1.46
CHRNA4-209ENST00000627000 CASC1Q6TDU7 716 aa24.15■■□□□ 1.46
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms