RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 ZNF771Q7L3S4 317 aaPredicted RBP13.03□□□□□ -0.32
UPF3A-212ENST00000619079 ILDR1Q86SU0 546 aaPredicted RBP13.03□□□□□ -0.32
UPF3A-212ENST00000619079 TMEM87AQ8NBN3 555 aa13.03□□□□□ -0.32
UPF3A-212ENST00000619079 WDR33Q9C0J8 1336 aaKnown RBP13.03□□□□□ -0.32
UPF3A-212ENST00000619079 SBNO1A3KN83 1393 aa13.03□□□□□ -0.32
UPF3A-212ENST00000619079 TNS3Q68CZ2 1445 aa13.03□□□□□ -0.32
UPF3A-212ENST00000619079 RIOK3O14730 519 aaKnown RBP13.02□□□□□ -0.32
UPF3A-212ENST00000619079 KDM4AO75164 1064 aa13.02□□□□□ -0.32
UPF3A-212ENST00000619079 VAMP4O75379 141 aa13.02□□□□□ -0.32
UPF3A-212ENST00000619079 MCCP23508 829 aa13.02□□□□□ -0.32
UPF3A-212ENST00000619079 EDC4Q6P2E9 1401 aaKnown RBP13.02□□□□□ -0.32
UPF3A-212ENST00000619079 ZBTB7CA1YPR0 619 aa13.02□□□□□ -0.33
UPF3A-212ENST00000619079 U2AF2P26368 475 aaKnown RBP eCLIP13.02□□□□□ -0.331e-6■□□□□ 9.6
UPF3A-212ENST00000619079 NEK4P51957 841 aa13.02□□□□□ -0.33
UPF3A-212ENST00000619079 NLRP6P59044 892 aa13.02□□□□□ -0.33
UPF3A-212ENST00000619079 DIAPH1O60610 1272 aaKnown RBP13.01□□□□□ -0.33
UPF3A-212ENST00000619079 FCHSD2O94868 740 aa13.01□□□□□ -0.33
UPF3A-212ENST00000619079 FOXD4L5Q5VV16 416 aaPredicted RBP13.01□□□□□ -0.33
UPF3A-212ENST00000619079 NME9Q86XW9 330 aa13.01□□□□□ -0.33
UPF3A-212ENST00000619079 FOXD4L4Q8WXT5 416 aaPredicted RBP13.01□□□□□ -0.33
UPF3A-212ENST00000619079 TTC21AQ8NDW8 1320 aa13.01□□□□□ -0.33
UPF3A-212ENST00000619079 ARHGEF10O15013 1369 aa13.01□□□□□ -0.33
UPF3A-212ENST00000619079 MX1P20591 662 aa13.01□□□□□ -0.33
UPF3A-212ENST00000619079 ANAPC15P60006 121 aa13.01□□□□□ -0.33
UPF3A-212ENST00000619079 RPAP2Q8IXW5 612 aaPredicted RBP13.01□□□□□ -0.33
UPF3A-212ENST00000619079 JCADQ9P266 1359 aa13.01□□□□□ -0.33
UPF3A-212ENST00000619079 COL16A1Q07092 1604 aaPredicted RBP13.01□□□□□ -0.33
UPF3A-212ENST00000619079 CCDC66A2RUB6 948 aa13□□□□□ -0.33
UPF3A-212ENST00000619079 NUTM2BA6NNL0 878 aaPredicted RBP13□□□□□ -0.33
UPF3A-212ENST00000619079 NUTM2EB1AL46 878 aaPredicted RBP13□□□□□ -0.33
UPF3A-212ENST00000619079 SOX12O15370 315 aa13□□□□□ -0.33
UPF3A-212ENST00000619079 GNAI1P63096 354 aa13□□□□□ -0.33
UPF3A-212ENST00000619079 NUTM2AQ8IVF1 878 aaPredicted RBP13□□□□□ -0.33
UPF3A-212ENST00000619079 CHAMP1Q96JM3 812 aa13□□□□□ -0.33
UPF3A-212ENST00000619079 ANKRD44Q8N8A2 993 aa13□□□□□ -0.33
UPF3A-212ENST00000619079 TMEM51Q9NW97 253 aa13□□□□□ -0.33
UPF3A-212ENST00000619079 CGNQ9P2M7 1197 aaKnown RBP13□□□□□ -0.33
UPF3A-212ENST00000619079 C17orf53Q8N3J3 647 aaPredicted RBP12.99□□□□□ -0.33
UPF3A-212ENST00000619079 CABLES1Q8TDN4 633 aa12.99□□□□□ -0.33
UPF3A-212ENST00000619079 GGNBP2Q9H3C7 697 aa12.99□□□□□ -0.33
UPF3A-212ENST00000619079 IFT57Q9NWB7 429 aa12.99□□□□□ -0.33
UPF3A-212ENST00000619079 PNPLA6Q8IY17 1366 aa12.99□□□□□ -0.33
UPF3A-212ENST00000619079 FAM177BA6PVY3 158 aa12.99□□□□□ -0.33
UPF3A-212ENST00000619079 CDK11BP21127 795 aaKnown RBP12.99□□□□□ -0.33
UPF3A-212ENST00000619079 USP48Q86UV5 1035 aa12.99□□□□□ -0.33
UPF3A-212ENST00000619079 AKAP12Q02952 1782 aa12.98□□□□□ -0.33
UPF3A-212ENST00000619079 RTL1A6NKG5 1358 aa12.98□□□□□ -0.33
UPF3A-212ENST00000619079 HCLS1P14317 486 aaPredicted RBP12.98□□□□□ -0.33
UPF3A-212ENST00000619079 COG3Q96JB2 828 aa12.98□□□□□ -0.33
UPF3A-212ENST00000619079 ZRANB1Q9UGI0 708 aa12.98□□□□□ -0.33
UPF3A-212ENST00000619079 ANKRD26Q9UPS8 1709 aa12.98□□□□□ -0.33
UPF3A-212ENST00000619079 SSH2Q76I76 1423 aa12.98□□□□□ -0.33
UPF3A-212ENST00000619079 UBE2HP62256 183 aa12.98□□□□□ -0.33
UPF3A-212ENST00000619079 FAM193AP78312 1265 aa12.98□□□□□ -0.33
UPF3A-212ENST00000619079 RGS12O14924 1447 aa12.97□□□□□ -0.33
UPF3A-212ENST00000619079 MON2Q7Z3U7 1717 aa12.97□□□□□ -0.33
UPF3A-212ENST00000619079 FYB1O15117 783 aa12.97□□□□□ -0.33
UPF3A-212ENST00000619079 GADD45BO75293 160 aaPredicted RBP12.97□□□□□ -0.33
UPF3A-212ENST00000619079 MPNDQ8N594 471 aa12.97□□□□□ -0.33
UPF3A-212ENST00000619079 SMTNL1A8MU46 457 aa12.97□□□□□ -0.33
UPF3A-212ENST00000619079 NCBP1Q09161 790 aaKnown RBP12.97□□□□□ -0.33
UPF3A-212ENST00000619079 IPO4Q8TEX9 1081 aaKnown RBP12.97□□□□□ -0.33
UPF3A-212ENST00000619079 OSBPL3Q9H4L5 887 aa12.97□□□□□ -0.33
UPF3A-212ENST00000619079 CTNNA3Q9UI47 895 aa12.97□□□□□ -0.33
UPF3A-212ENST00000619079 TRPM3Q9HCF6 1732 aaPredicted RBP12.96□□□□□ -0.33
UPF3A-212ENST00000619079 CREBRFQ8IUR6 639 aa12.96□□□□□ -0.33
UPF3A-212ENST00000619079 C16orf71Q8IYS4 520 aaPredicted RBP12.96□□□□□ -0.33
UPF3A-212ENST00000619079 IL17RAQ96F46 866 aa12.96□□□□□ -0.33
UPF3A-212ENST00000619079 ATP10DQ9P241 1426 aa12.96□□□□□ -0.33
UPF3A-212ENST00000619079 DDX41Q9UJV9 622 aaKnown RBP12.96□□□□□ -0.33
UPF3A-212ENST00000619079 NAP1L2Q9ULW6 460 aaPredicted RBP12.96□□□□□ -0.33
UPF3A-212ENST00000619079 ATP6V1DQ9Y5K8 247 aa12.96□□□□□ -0.33
UPF3A-212ENST00000619079 ADAMTS2O95450 1211 aa12.96□□□□□ -0.34
UPF3A-212ENST00000619079 TWISTNBQ3B726 338 aaPredicted RBP12.96□□□□□ -0.34
UPF3A-212ENST00000619079 PAXBP1Q9Y5B6 917 aa12.96□□□□□ -0.34
UPF3A-212ENST00000619079 NRKQ7Z2Y5 1582 aa12.95□□□□□ -0.34
UPF3A-212ENST00000619079 NFE2L2Q16236 605 aa12.95□□□□□ -0.34
UPF3A-212ENST00000619079 MEX3CQ5U5Q3 659 aaKnown RBP12.95□□□□□ -0.34
UPF3A-212ENST00000619079 KCNF1Q9H3M0 494 aa12.95□□□□□ -0.34
UPF3A-212ENST00000619079 PYCARDQ9ULZ3 195 aa12.95□□□□□ -0.34
UPF3A-212ENST00000619079 SPATA31A6Q5VVP1 1343 aa12.95□□□□□ -0.34
UPF3A-212ENST00000619079 EPB41L2O43491 1005 aaKnown RBP12.94□□□□□ -0.34
UPF3A-212ENST00000619079 SLC20A2Q08357 652 aa12.94□□□□□ -0.34
UPF3A-212ENST00000619079 MORC2Q9Y6X9 1032 aaPredicted RBP12.94□□□□□ -0.34
UPF3A-212ENST00000619079 RPAP1Q9BWH6 1393 aaPredicted RBP12.94□□□□□ -0.34
UPF3A-212ENST00000619079 HMMRO75330 724 aa12.94□□□□□ -0.34
UPF3A-212ENST00000619079 ZC3H6P61129 1189 aaKnown RBP12.94□□□□□ -0.34
UPF3A-212ENST00000619079 LMOD3Q0VAK6 560 aa12.94□□□□□ -0.34
UPF3A-212ENST00000619079 OTUD7AQ8TE49 926 aaPredicted RBP12.94□□□□□ -0.34
UPF3A-212ENST00000619079 GCP02774 474 aa12.93□□□□□ -0.34
UPF3A-212ENST00000619079 ZNF853P0CG23 659 aa12.93□□□□□ -0.34
UPF3A-212ENST00000619079 PRKAR2BP31323 418 aa12.93□□□□□ -0.34
UPF3A-212ENST00000619079 CEP85Q6P2H3 762 aa12.93□□□□□ -0.34
UPF3A-212ENST00000619079 TSPYL6Q8N831 410 aa12.93□□□□□ -0.34
UPF3A-212ENST00000619079 FUCA2Q9BTY2 467 aa12.93□□□□□ -0.34
UPF3A-212ENST00000619079 GDPD2Q9HCC8 539 aa12.93□□□□□ -0.34
UPF3A-212ENST00000619079 PIK3C2AO00443 1686 aa12.93□□□□□ -0.34
UPF3A-212ENST00000619079 ALS2Q96Q42 1657 aa12.93□□□□□ -0.34
UPF3A-212ENST00000619079 SLFN14P0C7P3 912 aa12.93□□□□□ -0.34
UPF3A-212ENST00000619079 PLCB2Q00722 1185 aa12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms