RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 C3P01024 1663 aa17.65■□□□□ 0.42
SHROOM1-208ENST00000617339 PDE1AP54750 535 aa17.65■□□□□ 0.42
SHROOM1-208ENST00000617339 ARHGEF25Q86VW2 580 aa17.65■□□□□ 0.42
SHROOM1-208ENST00000617339 UNC5CLQ8IV45 518 aa17.65■□□□□ 0.42
SHROOM1-208ENST00000617339 UPF3BQ9BZI7 483 aaKnown RBP17.65■□□□□ 0.42
SHROOM1-208ENST00000617339 PTCH1Q13635 1447 aa17.65■□□□□ 0.42
SHROOM1-208ENST00000617339 RIC3Q7Z5B4 369 aa17.65■□□□□ 0.42
SHROOM1-208ENST00000617339 ATP5J2-PTCD1G3V325 749 aa17.65■□□□□ 0.42
SHROOM1-208ENST00000617339 DNAAF4Q8WXU2 420 aa17.64■□□□□ 0.41
SHROOM1-208ENST00000617339 SSH2Q76I76 1423 aa17.64■□□□□ 0.41
SHROOM1-208ENST00000617339 RNMTO43148 476 aaKnown RBP17.64■□□□□ 0.41
SHROOM1-208ENST00000617339 ITSN1Q15811 1721 aa17.63■□□□□ 0.41
SHROOM1-208ENST00000617339 DDX49Q9Y6V7 483 aaKnown RBP17.63■□□□□ 0.41
SHROOM1-208ENST00000617339 PEAK1Q9H792 1746 aa17.63■□□□□ 0.41
SHROOM1-208ENST00000617339 PRDM10Q9NQV6 1147 aa17.62■□□□□ 0.41
SHROOM1-208ENST00000617339 TATP17735 454 aaPredicted RBP17.62■□□□□ 0.41
SHROOM1-208ENST00000617339 MX1P20591 662 aa17.62■□□□□ 0.41
SHROOM1-208ENST00000617339 NEK4P51957 841 aa17.62■□□□□ 0.41
SHROOM1-208ENST00000617339 CCDC85AQ96PX6 553 aaPredicted RBP17.62■□□□□ 0.41
SHROOM1-208ENST00000617339 SSFA2P28290 1259 aa17.62■□□□□ 0.41
SHROOM1-208ENST00000617339 DLG5Q8TDM6 1919 aa17.62■□□□□ 0.41
SHROOM1-208ENST00000617339 KIAA0232Q92628 1395 aa17.62■□□□□ 0.41
SHROOM1-208ENST00000617339 ANKRD26Q9UPS8 1709 aa17.61■□□□□ 0.41
SHROOM1-208ENST00000617339 AKAP4Q5JQC9 854 aa17.61■□□□□ 0.41
SHROOM1-208ENST00000617339 TMEM94Q12767 1356 aa17.61■□□□□ 0.41
SHROOM1-208ENST00000617339 FER1L4A9Z1Z3 1794 aa17.6■□□□□ 0.41
SHROOM1-208ENST00000617339 ATP8B2P98198 1209 aa17.6■□□□□ 0.41
SHROOM1-208ENST00000617339 CADPS2Q86UW7 1296 aa17.6■□□□□ 0.41
SHROOM1-208ENST00000617339 ZSCAN30Q86W11 494 aa17.6■□□□□ 0.41
SHROOM1-208ENST00000617339 CCDC8Q9H0W5 538 aaPredicted RBP17.6■□□□□ 0.41
SHROOM1-208ENST00000617339 NPHP4O75161 1426 aaPredicted RBP17.59■□□□□ 0.41
SHROOM1-208ENST00000617339 CWC27Q6UX04 472 aaKnown RBP17.59■□□□□ 0.41
SHROOM1-208ENST00000617339 KIF2CQ99661 725 aa17.59■□□□□ 0.41
SHROOM1-208ENST00000617339 USP16Q9Y5T5 823 aa17.59■□□□□ 0.41
SHROOM1-208ENST00000617339 SPG7Q9UQ90 795 aa17.59■□□□□ 0.41
SHROOM1-208ENST00000617339 NDUFB9Q9Y6M9 179 aa17.59■□□□□ 0.41
SHROOM1-208ENST00000617339 KDRP35968 1356 aa17.59■□□□□ 0.41
SHROOM1-208ENST00000617339 FAM177BA6PVY3 158 aa17.59■□□□□ 0.41
SHROOM1-208ENST00000617339 CCDC173Q0VFZ6 552 aa17.58■□□□□ 0.41
SHROOM1-208ENST00000617339 COPS6Q7L5N1 327 aa17.58■□□□□ 0.41
SHROOM1-208ENST00000617339 SOS1Q07889 1333 aaPredicted RBP17.58■□□□□ 0.41
SHROOM1-208ENST00000617339 ARHGAP23Q9P227 1491 aa17.58■□□□□ 0.41
SHROOM1-208ENST00000617339 RGS12O14924 1447 aa17.58■□□□□ 0.4
SHROOM1-208ENST00000617339 PKP1Q13835 747 aa17.58■□□□□ 0.4
SHROOM1-208ENST00000617339 ZGPATQ8N5A5 531 aaKnown RBP17.58■□□□□ 0.4
SHROOM1-208ENST00000617339 ZNF496Q96IT1 587 aaPredicted RBP17.58■□□□□ 0.4
SHROOM1-208ENST00000617339 MYD88Q99836 296 aa17.58■□□□□ 0.4
SHROOM1-208ENST00000617339 K7ELQ4 463 aaPredicted RBP17.57■□□□□ 0.4
SHROOM1-208ENST00000617339 DBF4Q9UBU7 674 aaPredicted RBP17.57■□□□□ 0.4
SHROOM1-208ENST00000617339 USP26Q9BXU7 913 aa17.57■□□□□ 0.4
SHROOM1-208ENST00000617339 GOLGA6L22H0YM25 854 aa17.57■□□□□ 0.4
SHROOM1-208ENST00000617339 GIGYF1O75420 1035 aaPredicted RBP17.57■□□□□ 0.4
SHROOM1-208ENST00000617339 XAGE3Q8WTP9 111 aa17.57■□□□□ 0.4
SHROOM1-208ENST00000617339 NPHP1O15259 732 aa17.56■□□□□ 0.4
SHROOM1-208ENST00000617339 HTATSF1O43719 755 aaKnown RBP17.56■□□□□ 0.4
SHROOM1-208ENST00000617339 ERC2O15083 957 aa17.56■□□□□ 0.4
SHROOM1-208ENST00000617339 CPA1P15085 419 aa17.56■□□□□ 0.4
SHROOM1-208ENST00000617339 CABP4P57796 275 aa17.56■□□□□ 0.4
SHROOM1-208ENST00000617339 CAVIN1Q6NZI2 390 aaKnown RBP17.56■□□□□ 0.4
SHROOM1-208ENST00000617339 ATP10DQ9P241 1426 aa17.56■□□□□ 0.4
SHROOM1-208ENST00000617339 RBM25P49756 843 aaKnown RBP17.55■□□□□ 0.4
SHROOM1-208ENST00000617339 AMOTQ4VCS5 1084 aa17.55■□□□□ 0.4
SHROOM1-208ENST00000617339 MCTP1Q6DN14 999 aa17.55■□□□□ 0.4
SHROOM1-208ENST00000617339 PDZRN4Q6ZMN7 1036 aaPredicted RBP17.55■□□□□ 0.4
SHROOM1-208ENST00000617339 RHPN1Q8TCX5 695 aa17.55■□□□□ 0.4
SHROOM1-208ENST00000617339 SKOR2Q2VWA4 1001 aaPredicted RBP17.55■□□□□ 0.4
SHROOM1-208ENST00000617339 PALD1Q9ULE6 856 aa17.55■□□□□ 0.4
SHROOM1-208ENST00000617339 MON2Q7Z3U7 1717 aa17.55■□□□□ 0.4
SHROOM1-208ENST00000617339 SLIT1O75093 1534 aa17.55■□□□□ 0.4
SHROOM1-208ENST00000617339 UQCRHLA0A096LP55 91 aa17.55■□□□□ 0.4
SHROOM1-208ENST00000617339 OFD1O75665 1012 aa17.55■□□□□ 0.4
SHROOM1-208ENST00000617339 UQCRHP07919 91 aa17.55■□□□□ 0.4
SHROOM1-208ENST00000617339 ISY1Q9ULR0 285 aaKnown RBP17.55■□□□□ 0.4
SHROOM1-208ENST00000617339 KCNJ4P48050 445 aa17.54■□□□□ 0.4
SHROOM1-208ENST00000617339 IL25Q9H293 177 aa17.54■□□□□ 0.4
SHROOM1-208ENST00000617339 ZHX1Q9UKY1 873 aaPredicted RBP17.54■□□□□ 0.4
SHROOM1-208ENST00000617339 RAB3GAP1Q15042 981 aa17.54■□□□□ 0.4
SHROOM1-208ENST00000617339 REC8O95072 547 aa17.53■□□□□ 0.4
SHROOM1-208ENST00000617339 ZNF790Q6PG37 636 aa17.53■□□□□ 0.4
SHROOM1-208ENST00000617339 MPNDQ8N594 471 aa17.53■□□□□ 0.4
SHROOM1-208ENST00000617339 IFIT2P09913 472 aaKnown RBP17.53■□□□□ 0.4
SHROOM1-208ENST00000617339 BEND3Q5T5X7 828 aa17.53■□□□□ 0.4
SHROOM1-208ENST00000617339 AACSQ86V21 672 aa17.53■□□□□ 0.4
SHROOM1-208ENST00000617339 ERBB3P21860 1342 aa17.53■□□□□ 0.4
SHROOM1-208ENST00000617339 ZBTB3Q9H5J0 574 aa17.52■□□□□ 0.4
SHROOM1-208ENST00000617339 BOLA2Q9H3K6 86 aa17.52■□□□□ 0.4
SHROOM1-208ENST00000617339 EDC3Q96F86 508 aaKnown RBP17.52■□□□□ 0.39
SHROOM1-208ENST00000617339 ZNF335Q9H4Z2 1342 aaPredicted RBP17.51■□□□□ 0.39
SHROOM1-208ENST00000617339 UBE3BQ7Z3V4 1068 aa17.51■□□□□ 0.39
SHROOM1-208ENST00000617339 BICC1Q9H694 974 aaKnown RBP17.51■□□□□ 0.39
SHROOM1-208ENST00000617339 ADGRL3Q9HAR2 1447 aa17.51■□□□□ 0.39
SHROOM1-208ENST00000617339 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP17.51■□□□□ 0.39
SHROOM1-208ENST00000617339 ST18O60284 1047 aa17.5■□□□□ 0.39
SHROOM1-208ENST00000617339 CLASRPQ8N2M8 674 aaKnown RBP17.5■□□□□ 0.39
SHROOM1-208ENST00000617339 PIK3C2AO00443 1686 aa17.5■□□□□ 0.39
SHROOM1-208ENST00000617339 AKAP12Q02952 1782 aa17.5■□□□□ 0.39
SHROOM1-208ENST00000617339 CYP27B1O15528 508 aa17.5■□□□□ 0.39
SHROOM1-208ENST00000617339 NEXNQ0ZGT2 675 aa17.5■□□□□ 0.39
SHROOM1-208ENST00000617339 G3BP1Q13283 466 aaKnown RBP eCLIP17.5■□□□□ 0.39
SHROOM1-208ENST00000617339 SUCLG2Q96I99 432 aa17.5■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 115.9 ms