RNA–Protein interactions for RNA: ENST00000615136.4

MMP28-204, Transcript of matrix metallopeptidase 28, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MMP28, Length 2,033 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28-204ENST00000615136 C22orf23Q9BZE7 217 aa23.76■■□□□ 1.39
MMP28-204ENST00000615136 PARP4Q9UKK3 1724 aaKnown RBP23.75■■□□□ 1.39
MMP28-204ENST00000615136 HMMRO75330 724 aa23.75■■□□□ 1.39
MMP28-204ENST00000615136 EXOC6BQ9Y2D4 811 aa23.75■■□□□ 1.39
MMP28-204ENST00000615136 NBPF7P0C2Y1 421 aaPredicted RBP23.74■■□□□ 1.39
MMP28-204ENST00000615136 ATP8B2P98198 1209 aa23.74■■□□□ 1.39
MMP28-204ENST00000615136 TBC1D2Q9BYX2 928 aa23.74■■□□□ 1.39
MMP28-204ENST00000615136 UBTFL1P0CB47 393 aaPredicted RBP23.74■■□□□ 1.39
MMP28-204ENST00000615136 CHMP4AQ9BY43 222 aa23.74■■□□□ 1.39
MMP28-204ENST00000615136 ZCRB1Q8TBF4 217 aaKnown RBP23.72■■□□□ 1.39
MMP28-204ENST00000615136 ANTXR1Q9H6X2 564 aa23.72■■□□□ 1.39
MMP28-204ENST00000615136 MAP3K2Q9Y2U5 619 aa23.72■■□□□ 1.39
MMP28-204ENST00000615136 ROBO1Q9Y6N7 1651 aa23.72■■□□□ 1.39
MMP28-204ENST00000615136 CARD10Q9BWT7 1032 aa23.72■■□□□ 1.39
MMP28-204ENST00000615136 SHANK3Q9BYB0 1731 aa23.71■■□□□ 1.39
MMP28-204ENST00000615136 FRAT2O75474 233 aaPredicted RBP23.71■■□□□ 1.39
MMP28-204ENST00000615136 CABP4P57796 275 aa23.71■■□□□ 1.39
MMP28-204ENST00000615136 DDX21Q9NR30 783 aaKnown RBP eCLIP23.71■■□□□ 1.39
MMP28-204ENST00000615136 AIMP1Q12904 312 aaKnown RBP23.7■■□□□ 1.38
MMP28-204ENST00000615136 USP16Q9Y5T5 823 aa23.7■■□□□ 1.38
MMP28-204ENST00000615136 GLI3P10071 1580 aa23.7■■□□□ 1.38
MMP28-204ENST00000615136 HSP90AB1P08238 724 aaKnown RBP23.69■■□□□ 1.38
MMP28-204ENST00000615136 IL2RBP14784 551 aa23.69■■□□□ 1.38
MMP28-204ENST00000615136 PIP4K2AP48426 406 aaPredicted RBP23.69■■□□□ 1.38
MMP28-204ENST00000615136 TTC22Q5TAA0 569 aa23.69■■□□□ 1.38
MMP28-204ENST00000615136 KSR2Q6VAB6 950 aa23.69■■□□□ 1.38
MMP28-204ENST00000615136 HYPKQ9NX55 129 aa23.69■■□□□ 1.38
MMP28-204ENST00000615136 PCDH11XQ9BZA7 1347 aa23.69■■□□□ 1.38
MMP28-204ENST00000615136 PCDH11YQ9BZA8 1340 aa23.69■■□□□ 1.38
MMP28-204ENST00000615136 EVA1CP58658 441 aa23.69■■□□□ 1.38
MMP28-204ENST00000615136 TBC1D9Q6ZT07 1266 aa23.69■■□□□ 1.38
MMP28-204ENST00000615136 MYL6BP14649 208 aa23.68■■□□□ 1.38
MMP28-204ENST00000615136 CWF19L2Q2TBE0 894 aaKnown RBP23.68■■□□□ 1.38
MMP28-204ENST00000615136 RBM25P49756 843 aaKnown RBP23.67■■□□□ 1.38
MMP28-204ENST00000615136 TTC5Q8N0Z6 440 aa23.67■■□□□ 1.38
MMP28-204ENST00000615136 DDX54Q8TDD1 881 aaKnown RBP23.67■■□□□ 1.38
MMP28-204ENST00000615136 GSE1Q14687 1217 aa23.66■■□□□ 1.38
MMP28-204ENST00000615136 PPP1R42Q7Z4L9 355 aa23.66■■□□□ 1.38
MMP28-204ENST00000615136 SSH3Q8TE77 659 aa23.66■■□□□ 1.38
MMP28-204ENST00000615136 SLKQ9H2G2 1235 aaPredicted RBP23.66■■□□□ 1.38
MMP28-204ENST00000615136 BTG4Q9NY30 223 aa23.66■■□□□ 1.38
MMP28-204ENST00000615136 IBTKQ9P2D0 1353 aaPredicted RBP23.66■■□□□ 1.38
MMP28-204ENST00000615136 LTBP4Q8N2S1 1624 aa23.65■■□□□ 1.38
MMP28-204ENST00000615136 LRP10Q7Z4F1 713 aa23.65■■□□□ 1.38
MMP28-204ENST00000615136 SNRPA1P09661 255 aaKnown RBP23.64■■□□□ 1.38
MMP28-204ENST00000615136 FMNL2Q96PY5 1086 aa23.64■■□□□ 1.38
MMP28-204ENST00000615136 POLA2Q14181 598 aa23.63■■□□□ 1.37
MMP28-204ENST00000615136 TSHZ3Q63HK5 1081 aa23.63■■□□□ 1.37
MMP28-204ENST00000615136 XAGE3Q8WTP9 111 aa23.63■■□□□ 1.37
MMP28-204ENST00000615136 NKX1-1Q15270 411 aaPredicted RBP23.62■■□□□ 1.37
MMP28-204ENST00000615136 COPS6Q7L5N1 327 aa23.62■■□□□ 1.37
MMP28-204ENST00000615136 LRRCC1Q9C099 1032 aa23.62■■□□□ 1.37
MMP28-204ENST00000615136 SALL3Q9BXA9 1300 aa23.62■■□□□ 1.37
MMP28-204ENST00000615136 AHDC1Q5TGY3 1603 aaPredicted RBP23.61■■□□□ 1.37
MMP28-204ENST00000615136 SRGAP3O43295 1099 aa23.61■■□□□ 1.37
MMP28-204ENST00000615136 CDC45O75419 566 aa23.61■■□□□ 1.37
MMP28-204ENST00000615136 ALDH1L1O75891 902 aa23.61■■□□□ 1.37
MMP28-204ENST00000615136 SDSP20132 328 aa23.61■■□□□ 1.37
MMP28-204ENST00000615136 IGKV5-2P06315 115 aa23.6■■□□□ 1.37
MMP28-204ENST00000615136 PDE1AP54750 535 aa23.6■■□□□ 1.37
MMP28-204ENST00000615136 COL16A1Q07092 1604 aaPredicted RBP23.6■■□□□ 1.37
MMP28-204ENST00000615136 TOGARAM1Q9Y4F4 1720 aa23.6■■□□□ 1.37
MMP28-204ENST00000615136 ERVV-2B6SEH9 535 aa23.59■■□□□ 1.37
MMP28-204ENST00000615136 LINS1Q8NG48 757 aa23.59■■□□□ 1.37
MMP28-204ENST00000615136 C9orf78Q9NZ63 289 aaPredicted RBP23.59■■□□□ 1.37
MMP28-204ENST00000615136 DDX58O95786 925 aaKnown RBP23.59■■□□□ 1.37
MMP28-204ENST00000615136 RIC3Q7Z5B4 369 aa23.59■■□□□ 1.37
MMP28-204ENST00000615136 UBR2Q8IWV8 1755 aa23.59■■□□□ 1.37
MMP28-204ENST00000615136 SURF6O75683 361 aaKnown RBP23.58■■□□□ 1.37
MMP28-204ENST00000615136 OSBPL3Q9H4L5 887 aa23.58■■□□□ 1.37
MMP28-204ENST00000615136 IL1RAPL2Q9NP60 686 aa23.58■■□□□ 1.37
MMP28-204ENST00000615136 KCPQ6ZWJ8 1503 aa23.58■■□□□ 1.37
MMP28-204ENST00000615136 LAMB4A4D0S4 1761 aa23.58■■□□□ 1.36
MMP28-204ENST00000615136 KAZALD1Q96I82 304 aa23.57■■□□□ 1.36
MMP28-204ENST00000615136 PAPPAQ13219 1627 aa23.57■■□□□ 1.36
MMP28-204ENST00000615136 COL22A1Q8NFW1 1626 aaPredicted RBP23.57■■□□□ 1.36
MMP28-204ENST00000615136 COL14A1Q05707 1796 aaKnown RBP23.57■■□□□ 1.36
MMP28-204ENST00000615136 SNX21Q969T3 373 aa23.57■■□□□ 1.36
MMP28-204ENST00000615136 HSCBQ8IWL3 235 aa23.56■■□□□ 1.36
MMP28-204ENST00000615136 NBPF26B4DH59 902 aa23.55■■□□□ 1.36
MMP28-204ENST00000615136 GRM8O00222 908 aa23.55■■□□□ 1.36
MMP28-204ENST00000615136 NBPF14Q5TI25 921 aa23.55■■□□□ 1.36
MMP28-204ENST00000615136 NBPF10Q6P3W6 841 aaKnown RBP23.55■■□□□ 1.36
MMP28-204ENST00000615136 NBPF15Q8N660 670 aa23.55■■□□□ 1.36
MMP28-204ENST00000615136 SUCLG2Q96I99 432 aa23.55■■□□□ 1.36
MMP28-204ENST00000615136 TUBGCP6Q96RT7 1819 aa23.55■■□□□ 1.36
MMP28-204ENST00000615136 PTCD1O75127 700 aaKnown RBP23.55■■□□□ 1.36
MMP28-204ENST00000615136 MYD88Q99836 296 aa23.55■■□□□ 1.36
MMP28-204ENST00000615136 MX1P20591 662 aa23.54■■□□□ 1.36
MMP28-204ENST00000615136 ANKRD13DQ6ZTN6 518 aa23.54■■□□□ 1.36
MMP28-204ENST00000615136 UTYO14607 1347 aa23.54■■□□□ 1.36
MMP28-204ENST00000615136 NEURL1BA8MQ27 555 aa23.54■■□□□ 1.36
MMP28-204ENST00000615136 MTX1Q13505 466 aa23.54■■□□□ 1.36
MMP28-204ENST00000615136 KIF2CQ99661 725 aa23.54■■□□□ 1.36
MMP28-204ENST00000615136 METTL22Q9BUU2 404 aaPredicted RBP23.54■■□□□ 1.36
MMP28-204ENST00000615136 RHPN1Q8TCX5 695 aa23.53■■□□□ 1.36
MMP28-204ENST00000615136 DISP2A7MBM2 1401 aa23.53■■□□□ 1.36
MMP28-204ENST00000615136 NUTM1Q86Y26 1132 aa23.52■■□□□ 1.36
MMP28-204ENST00000615136 ARFGEF2Q9Y6D5 1785 aa23.52■■□□□ 1.36
MMP28-204ENST00000615136 BICC1Q9H694 974 aaKnown RBP23.52■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms