RNA–Protein interactions for RNA: ENST00000596104.5

LIG1-209, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 531 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-209ENST00000596104 ZBTB1Q9Y2K1 713 aa13.58□□□□□ -0.24
LIG1-209ENST00000596104 KDM2BQ8NHM5 1336 aa13.58□□□□□ -0.24
LIG1-209ENST00000596104 ARFGEF1Q9Y6D6 1849 aa13.57□□□□□ -0.24
LIG1-209ENST00000596104 HMOX1P09601 288 aa13.57□□□□□ -0.24
LIG1-209ENST00000596104 C16orf71Q8IYS4 520 aaPredicted RBP13.57□□□□□ -0.24
LIG1-209ENST00000596104 COL15A1P39059 1388 aa13.57□□□□□ -0.24
LIG1-209ENST00000596104 SCN11AQ9UI33 1791 aa13.56□□□□□ -0.24
LIG1-209ENST00000596104 HTRA3P83110 453 aa13.56□□□□□ -0.24
LIG1-209ENST00000596104 RASSF7Q02833 373 aa13.56□□□□□ -0.24
LIG1-209ENST00000596104 MTHFSDQ2M296 383 aaKnown RBP13.56□□□□□ -0.24
LIG1-209ENST00000596104 VSIG10Q8N0Z9 540 aa13.56□□□□□ -0.24
LIG1-209ENST00000596104 RRAGCQ9HB90 399 aa13.56□□□□□ -0.24
LIG1-209ENST00000596104 SERPINB2P05120 415 aa13.55□□□□□ -0.24
LIG1-209ENST00000596104 PRELPP51888 382 aa13.55□□□□□ -0.24
LIG1-209ENST00000596104 KLRG1Q96E93 195 aa13.55□□□□□ -0.24
LIG1-209ENST00000596104 ZC3H4Q9UPT8 1303 aaKnown RBP13.55□□□□□ -0.24
LIG1-209ENST00000596104 PER1O15534 1290 aaPredicted RBP13.54□□□□□ -0.24
LIG1-209ENST00000596104 JMYQ8N9B5 988 aa13.54□□□□□ -0.24
LIG1-209ENST00000596104 KIF7Q2M1P5 1343 aa13.54□□□□□ -0.24
LIG1-209ENST00000596104 CARMIL3Q8ND23 1372 aa13.54□□□□□ -0.24
LIG1-209ENST00000596104 LMNB1P20700 586 aa13.53□□□□□ -0.24
LIG1-209ENST00000596104 EIF5P55010 431 aaKnown RBP13.53□□□□□ -0.24
LIG1-209ENST00000596104 NRXN2Q9P2S2 1712 aa13.53□□□□□ -0.24
LIG1-209ENST00000596104 NFKBIEO00221 500 aa13.52□□□□□ -0.25
LIG1-209ENST00000596104 DIAPH1O60610 1272 aaKnown RBP13.52□□□□□ -0.25
LIG1-209ENST00000596104 CANXP27824 592 aaKnown RBP13.52□□□□□ -0.25
LIG1-209ENST00000596104 TTLL6Q8N841 843 aa13.52□□□□□ -0.25
LIG1-209ENST00000596104 WDR90Q96KV7 1748 aa13.52□□□□□ -0.25
LIG1-209ENST00000596104 GLTPD2A6NH11 291 aa13.51□□□□□ -0.25
LIG1-209ENST00000596104 C2CD5Q86YS7 1000 aa13.51□□□□□ -0.25
LIG1-209ENST00000596104 SMC1BQ8NDV3 1235 aa13.51□□□□□ -0.25
LIG1-209ENST00000596104 STARD3NLO95772 234 aa13.5□□□□□ -0.25
LIG1-209ENST00000596104 IL17REQ8NFR9 667 aa13.5□□□□□ -0.25
LIG1-209ENST00000596104 ZNF496Q96IT1 587 aaPredicted RBP13.5□□□□□ -0.25
LIG1-209ENST00000596104 COL3A1P02461 1466 aaPredicted RBP13.49□□□□□ -0.25
LIG1-209ENST00000596104 HEG1Q9ULI3 1381 aa13.49□□□□□ -0.25
LIG1-209ENST00000596104 H0YIN7 160 aa13.49□□□□□ -0.25
LIG1-209ENST00000596104 VEGFAP15692 232 aaPredicted RBP13.49□□□□□ -0.25
LIG1-209ENST00000596104 CC2D1BQ5T0F9 858 aaKnown RBP13.49□□□□□ -0.25
LIG1-209ENST00000596104 TBC1D9BQ66K14 1250 aa13.49□□□□□ -0.25
LIG1-209ENST00000596104 BICDL1Q6ZP65 573 aa13.49□□□□□ -0.25
LIG1-209ENST00000596104 TTC5Q8N0Z6 440 aa13.49□□□□□ -0.25
LIG1-209ENST00000596104 TNRC6CQ9HCJ0 1690 aaKnown RBP13.49□□□□□ -0.25
LIG1-209ENST00000596104 A0A087WZG4 1122 aa13.48□□□□□ -0.25
LIG1-209ENST00000596104 ZNF790Q6PG37 636 aa13.48□□□□□ -0.25
LIG1-209ENST00000596104 CCER1Q8TC90 406 aaPredicted RBP13.48□□□□□ -0.25
LIG1-209ENST00000596104 SBF1O95248 1867 aa13.48□□□□□ -0.25
LIG1-209ENST00000596104 AFDNP55196 1824 aaKnown RBP13.48□□□□□ -0.25
LIG1-209ENST00000596104 UBR2Q8IWV8 1755 aa13.48□□□□□ -0.25
LIG1-209ENST00000596104 NPC1L1Q9UHC9 1359 aa13.47□□□□□ -0.25
LIG1-209ENST00000596104 POTECB2RU33 542 aa13.47□□□□□ -0.25
LIG1-209ENST00000596104 TEFQ10587 303 aa13.47□□□□□ -0.25
LIG1-209ENST00000596104 COL13A1Q5TAT6 717 aaPredicted RBP13.47□□□□□ -0.25
LIG1-209ENST00000596104 PRR5LQ6MZQ0 368 aa13.47□□□□□ -0.25
LIG1-209ENST00000596104 GAS2L2Q8NHY3 880 aa13.47□□□□□ -0.25
LIG1-209ENST00000596104 BRIP1Q9BX63 1249 aa13.47□□□□□ -0.25
LIG1-209ENST00000596104 DLEC1Q9Y238 1755 aa13.46□□□□□ -0.25
LIG1-209ENST00000596104 GNAT3A8MTJ3 354 aa13.46□□□□□ -0.25
LIG1-209ENST00000596104 IL6STP40189 918 aaPredicted RBP13.46□□□□□ -0.25
LIG1-209ENST00000596104 TEX13AQ9BXU3 409 aaPredicted RBP13.46□□□□□ -0.25
LIG1-209ENST00000596104 PDZRN3Q9UPQ7 1066 aa13.46□□□□□ -0.25
LIG1-209ENST00000596104 TBC1D2BQ9UPU7 963 aa13.46□□□□□ -0.25
LIG1-209ENST00000596104 CEMIPQ8WUJ3 1361 aa13.45□□□□□ -0.26
LIG1-209ENST00000596104 U2SURPO15042 1029 aaKnown RBP13.45□□□□□ -0.26
LIG1-209ENST00000596104 CAMTA2O94983 1202 aa13.45□□□□□ -0.26
LIG1-209ENST00000596104 PDE6BP35913 854 aa13.45□□□□□ -0.26
LIG1-209ENST00000596104 CCDC24Q8N4L8 307 aa13.45□□□□□ -0.26
LIG1-209ENST00000596104 ZNF622Q969S3 477 aaKnown RBP eCLIP13.45□□□□□ -0.269e-7■□□□□ 8.5
LIG1-209ENST00000596104 LTBP3Q9NS15 1303 aa13.44□□□□□ -0.26
LIG1-209ENST00000596104 KCNQ3O43525 872 aa13.44□□□□□ -0.26
LIG1-209ENST00000596104 C21orf2O43822 256 aa13.44□□□□□ -0.26
LIG1-209ENST00000596104 A1BGP04217 495 aa13.44□□□□□ -0.26
LIG1-209ENST00000596104 FMNL2Q96PY5 1086 aa13.44□□□□□ -0.26
LIG1-209ENST00000596104 ZNF219Q9P2Y4 722 aaPredicted RBP13.43□□□□□ -0.26
LIG1-209ENST00000596104 ZNF330Q9Y3S2 320 aaPredicted RBP13.43□□□□□ -0.26
LIG1-209ENST00000596104 SCN7AQ01118 1682 aa13.43□□□□□ -0.26
LIG1-209ENST00000596104 SRGNP10124 158 aa13.42□□□□□ -0.26
LIG1-209ENST00000596104 ERFEQ4G0M1 354 aa13.42□□□□□ -0.26
LIG1-209ENST00000596104 DPY19L2Q6NUT2 758 aa13.42□□□□□ -0.26
LIG1-209ENST00000596104 CNBD1Q8NA66 436 aa13.42□□□□□ -0.26
LIG1-209ENST00000596104 PHACTR3Q96KR7 559 aa13.42□□□□□ -0.26
LIG1-209ENST00000596104 SETDB2Q96T68 719 aa13.42□□□□□ -0.26
LIG1-209ENST00000596104 ANKRD31Q8N7Z5 1873 aa13.42□□□□□ -0.26
LIG1-209ENST00000596104 STYK1Q6J9G0 422 aa13.41□□□□□ -0.26
LIG1-209ENST00000596104 CNKSR1Q969H4 720 aa13.41□□□□□ -0.26
LIG1-209ENST00000596104 RSPH6AQ9H0K4 717 aa13.41□□□□□ -0.26
LIG1-209ENST00000596104 TAOK3Q9H2K8 898 aa13.41□□□□□ -0.26
LIG1-209ENST00000596104 USP16Q9Y5T5 823 aa13.41□□□□□ -0.26
LIG1-209ENST00000596104 TIAM2Q8IVF5 1701 aa13.41□□□□□ -0.26
LIG1-209ENST00000596104 COL11A2P13942 1736 aaPredicted RBP13.4□□□□□ -0.26
LIG1-209ENST00000596104 BTBD11A6QL63 1104 aa13.4□□□□□ -0.26
LIG1-209ENST00000596104 HSPA1AP0DMV8 641 aaKnown RBP13.4□□□□□ -0.26
LIG1-209ENST00000596104 HSPA1BP0DMV9 641 aaKnown RBP13.4□□□□□ -0.26
LIG1-209ENST00000596104 PRKAR2BP31323 418 aa13.4□□□□□ -0.26
LIG1-209ENST00000596104 CNGB1Q14028 1251 aaPredicted RBP13.4□□□□□ -0.26
LIG1-209ENST00000596104 PRPF40BQ6NWY9 871 aaKnown RBP13.4□□□□□ -0.26
LIG1-209ENST00000596104 DZIP3Q86Y13 1208 aaKnown RBP13.4□□□□□ -0.26
LIG1-209ENST00000596104 SIPA1L3O60292 1781 aaPredicted RBP13.4□□□□□ -0.26
LIG1-209ENST00000596104 VIRMAQ69YN4 1812 aaKnown RBP13.39□□□□□ -0.27
LIG1-209ENST00000596104 PRAMEF22A3QJZ6 481 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 240.8 ms