RNA–Protein interactions for RNA: ENST00000585428.1

SDF2-202, Transcript of stromal cell derived factor 2, humanhuman

TSL 1 (best)

Gene SDF2, Length 924 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF2-202ENST00000585428 TJP1Q07157 1748 aa19.6■□□□□ 0.73
SDF2-202ENST00000585428 PPP4R3CPQ6ZMV5 832 aa19.6■□□□□ 0.73
SDF2-202ENST00000585428 ZBTB1Q9Y2K1 713 aa19.6■□□□□ 0.73
SDF2-202ENST00000585428 ADAMTS7Q9UKP4 1686 aa19.59■□□□□ 0.73
SDF2-202ENST00000585428 CC2D1BQ5T0F9 858 aaKnown RBP19.59■□□□□ 0.73
SDF2-202ENST00000585428 RBM46Q8TBY0 533 aaKnown RBP19.59■□□□□ 0.73
SDF2-202ENST00000585428 SCN11AQ9UI33 1791 aa19.59■□□□□ 0.73
SDF2-202ENST00000585428 MRC1P22897 1456 aa19.59■□□□□ 0.73
SDF2-202ENST00000585428 SERPINB2P05120 415 aa19.58■□□□□ 0.72
SDF2-202ENST00000585428 IL17REQ8NFR9 667 aa19.58■□□□□ 0.72
SDF2-202ENST00000585428 RNF181Q9P0P0 153 aa19.58■□□□□ 0.72
SDF2-202ENST00000585428 BRCA1P38398 1863 aaKnown RBP19.57■□□□□ 0.72
SDF2-202ENST00000585428 EIF5P55010 431 aaKnown RBP19.57■□□□□ 0.72
SDF2-202ENST00000585428 COL15A1P39059 1388 aa19.57■□□□□ 0.72
SDF2-202ENST00000585428 KCPQ6ZWJ8 1503 aa19.56■□□□□ 0.72
SDF2-202ENST00000585428 CANXP27824 592 aaKnown RBP19.56■□□□□ 0.72
SDF2-202ENST00000585428 RRAGCQ9HB90 399 aa19.56■□□□□ 0.72
SDF2-202ENST00000585428 KDM2BQ8NHM5 1336 aa19.55■□□□□ 0.72
SDF2-202ENST00000585428 STARD3NLO95772 234 aa19.55■□□□□ 0.72
SDF2-202ENST00000585428 FSTL1Q12841 308 aa19.54■□□□□ 0.72
SDF2-202ENST00000585428 ZNF790Q6PG37 636 aa19.54■□□□□ 0.72
SDF2-202ENST00000585428 ZNF496Q96IT1 587 aaPredicted RBP19.54■□□□□ 0.72
SDF2-202ENST00000585428 NPC1L1Q9UHC9 1359 aa19.54■□□□□ 0.72
SDF2-202ENST00000585428 GNAT3A8MTJ3 354 aa19.53■□□□□ 0.72
SDF2-202ENST00000585428 PRELPP51888 382 aa19.53■□□□□ 0.72
SDF2-202ENST00000585428 C16orf71Q8IYS4 520 aaPredicted RBP19.53■□□□□ 0.72
SDF2-202ENST00000585428 TTLL6Q8N841 843 aa19.53■□□□□ 0.72
SDF2-202ENST00000585428 TEX13AQ9BXU3 409 aaPredicted RBP19.53■□□□□ 0.72
SDF2-202ENST00000585428 ARFGEF1Q9Y6D6 1849 aa19.53■□□□□ 0.72
SDF2-202ENST00000585428 A0A087WZG4 1122 aa19.52■□□□□ 0.72
SDF2-202ENST00000585428 TTC5Q8N0Z6 440 aa19.52■□□□□ 0.72
SDF2-202ENST00000585428 H0YIN7 160 aa19.51■□□□□ 0.71
SDF2-202ENST00000585428 LMNB1P20700 586 aa19.51■□□□□ 0.71
SDF2-202ENST00000585428 C2CD5Q86YS7 1000 aa19.51■□□□□ 0.71
SDF2-202ENST00000585428 GAS2L2Q8NHY3 880 aa19.51■□□□□ 0.71
SDF2-202ENST00000585428 U2SURPO15042 1029 aaKnown RBP19.5■□□□□ 0.71
SDF2-202ENST00000585428 RASSF7Q02833 373 aa19.5■□□□□ 0.71
SDF2-202ENST00000585428 TEFQ10587 303 aa19.5■□□□□ 0.71
SDF2-202ENST00000585428 TBC1D9BQ66K14 1250 aa19.5■□□□□ 0.71
SDF2-202ENST00000585428 ZC3H4Q9UPT8 1303 aaKnown RBP19.5■□□□□ 0.71
SDF2-202ENST00000585428 HEG1Q9ULI3 1381 aa19.49■□□□□ 0.71
SDF2-202ENST00000585428 GLTPD2A6NH11 291 aa19.49■□□□□ 0.71
SDF2-202ENST00000585428 BICDL1Q6ZP65 573 aa19.49■□□□□ 0.71
SDF2-202ENST00000585428 PHACTR3Q96KR7 559 aa19.49■□□□□ 0.71
SDF2-202ENST00000585428 IL6STP40189 918 aaPredicted RBP19.48■□□□□ 0.71
SDF2-202ENST00000585428 BRIP1Q9BX63 1249 aa19.48■□□□□ 0.71
SDF2-202ENST00000585428 TBC1D2BQ9UPU7 963 aa19.48■□□□□ 0.71
SDF2-202ENST00000585428 NRXN2Q9P2S2 1712 aa19.48■□□□□ 0.71
SDF2-202ENST00000585428 COL3A1P02461 1466 aaPredicted RBP19.48■□□□□ 0.71
SDF2-202ENST00000585428 HTRA3P83110 453 aa19.47■□□□□ 0.71
SDF2-202ENST00000585428 PDZRN3Q9UPQ7 1066 aa19.47■□□□□ 0.71
SDF2-202ENST00000585428 CEMIPQ8WUJ3 1361 aa19.46■□□□□ 0.71
SDF2-202ENST00000585428 NFKBIEO00221 500 aa19.46■□□□□ 0.71
SDF2-202ENST00000585428 KCNQ3O43525 872 aa19.46■□□□□ 0.71
SDF2-202ENST00000585428 A1BGP04217 495 aa19.46■□□□□ 0.71
SDF2-202ENST00000585428 VEGFAP15692 232 aaPredicted RBP19.46■□□□□ 0.71
SDF2-202ENST00000585428 JMYQ8N9B5 988 aa19.46■□□□□ 0.71
SDF2-202ENST00000585428 KLRG1Q96E93 195 aa19.46■□□□□ 0.71
SDF2-202ENST00000585428 FMNL2Q96PY5 1086 aa19.46■□□□□ 0.71
SDF2-202ENST00000585428 CARMIL3Q8ND23 1372 aa19.45■□□□□ 0.7
SDF2-202ENST00000585428 PDE6BP35913 854 aa19.45■□□□□ 0.7
SDF2-202ENST00000585428 CNGB1Q14028 1251 aaPredicted RBP19.45■□□□□ 0.7
SDF2-202ENST00000585428 SMC1BQ8NDV3 1235 aa19.45■□□□□ 0.7
SDF2-202ENST00000585428 POTECB2RU33 542 aa19.44■□□□□ 0.7
SDF2-202ENST00000585428 PRR5LQ6MZQ0 368 aa19.44■□□□□ 0.7
SDF2-202ENST00000585428 RSPH6AQ9H0K4 717 aa19.44■□□□□ 0.7
SDF2-202ENST00000585428 USP16Q9Y5T5 823 aa19.44■□□□□ 0.7
SDF2-202ENST00000585428 AFDNP55196 1824 aaKnown RBP19.44■□□□□ 0.7
SDF2-202ENST00000585428 SBF1O95248 1867 aa19.43■□□□□ 0.7
SDF2-202ENST00000585428 UBR2Q8IWV8 1755 aa19.43■□□□□ 0.7
SDF2-202ENST00000585428 BTBD11A6QL63 1104 aa19.43■□□□□ 0.7
SDF2-202ENST00000585428 CAMTA2O94983 1202 aa19.43■□□□□ 0.7
SDF2-202ENST00000585428 ZNF622Q969S3 477 aaKnown RBP eCLIP19.43■□□□□ 0.7
SDF2-202ENST00000585428 PRKAR2BP31323 418 aa19.42■□□□□ 0.7
SDF2-202ENST00000585428 CCDC24Q8N4L8 307 aa19.42■□□□□ 0.7
SDF2-202ENST00000585428 SETDB2Q96T68 719 aa19.42■□□□□ 0.7
SDF2-202ENST00000585428 C21orf2O43822 256 aa19.41■□□□□ 0.7
SDF2-202ENST00000585428 ZNF330Q9Y3S2 320 aaPredicted RBP19.41■□□□□ 0.7
SDF2-202ENST00000585428 DPY19L2Q6NUT2 758 aa19.4■□□□□ 0.7
SDF2-202ENST00000585428 CFAP53Q96M91 514 aa19.4■□□□□ 0.7
SDF2-202ENST00000585428 SRGNP10124 158 aa19.39■□□□□ 0.69
SDF2-202ENST00000585428 CLEC4GQ6UXB4 293 aa19.39■□□□□ 0.69
SDF2-202ENST00000585428 NPM2Q86SE8 214 aaKnown RBP19.39■□□□□ 0.69
SDF2-202ENST00000585428 DZIP3Q86Y13 1208 aaKnown RBP19.39■□□□□ 0.69
SDF2-202ENST00000585428 NUDCQ9Y266 331 aa19.39■□□□□ 0.69
SDF2-202ENST00000585428 PRAMEF22A3QJZ6 481 aa19.38■□□□□ 0.69
SDF2-202ENST00000585428 KCNA4P22459 653 aa19.38■□□□□ 0.69
SDF2-202ENST00000585428 STYK1Q6J9G0 422 aa19.38■□□□□ 0.69
SDF2-202ENST00000585428 CNKSR1Q969H4 720 aa19.38■□□□□ 0.69
SDF2-202ENST00000585428 VIRMAQ69YN4 1812 aaKnown RBP19.37■□□□□ 0.69
SDF2-202ENST00000585428 LTBP3Q9NS15 1303 aa19.37■□□□□ 0.69
SDF2-202ENST00000585428 SNRPA1P09661 255 aaKnown RBP19.37■□□□□ 0.69
SDF2-202ENST00000585428 ERFEQ4G0M1 354 aa19.37■□□□□ 0.69
SDF2-202ENST00000585428 CNBD1Q8NA66 436 aa19.37■□□□□ 0.69
SDF2-202ENST00000585428 ZNF219Q9P2Y4 722 aaPredicted RBP19.37■□□□□ 0.69
SDF2-202ENST00000585428 PPP2R1AP30153 589 aa19.36■□□□□ 0.69
SDF2-202ENST00000585428 MCM10Q7L590 875 aa19.36■□□□□ 0.69
SDF2-202ENST00000585428 C7orf43Q8WVR3 580 aa19.36■□□□□ 0.69
SDF2-202ENST00000585428 DLEC1Q9Y238 1755 aa19.35■□□□□ 0.69
SDF2-202ENST00000585428 WDR90Q96KV7 1748 aa19.35■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms