RNA–Protein interactions for RNA: ENST00000584655.5

RFFL-212, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 2 BASIC

Gene RFFL, Length 4,039 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-212ENST00000584655 C3P01024 1663 aa12.65□□□□□ -0.38
RFFL-212ENST00000584655 FER1L4A9Z1Z3 1794 aa12.65□□□□□ -0.38
RFFL-212ENST00000584655 SMC5Q8IY18 1101 aa12.65□□□□□ -0.38
RFFL-212ENST00000584655 GIGYF1O75420 1035 aaPredicted RBP12.65□□□□□ -0.39
RFFL-212ENST00000584655 CT47B1P0C2W7 299 aaPredicted RBP12.65□□□□□ -0.39
RFFL-212ENST00000584655 IFIT2P09913 472 aaKnown RBP12.64□□□□□ -0.39
RFFL-212ENST00000584655 PRIM1P49642 420 aaKnown RBP12.64□□□□□ -0.39
RFFL-212ENST00000584655 CCT4P50991 539 aaKnown RBP12.64□□□□□ -0.39
RFFL-212ENST00000584655 IQSEC2Q5JU85 1478 aa12.64□□□□□ -0.39
RFFL-212ENST00000584655 SNAP23O00161 211 aa12.64□□□□□ -0.39
RFFL-212ENST00000584655 FAM98CQ17RN3 349 aaKnown RBP12.64□□□□□ -0.39
RFFL-212ENST00000584655 HELBQ8NG08 1087 aaPredicted RBP12.64□□□□□ -0.39
RFFL-212ENST00000584655 FAM89AQ96GI7 184 aa12.64□□□□□ -0.39
RFFL-212ENST00000584655 DBF4Q9UBU7 674 aaPredicted RBP12.64□□□□□ -0.39
RFFL-212ENST00000584655 NRXN3Q9Y4C0 1643 aa12.64□□□□□ -0.39
RFFL-212ENST00000584655 SOS1Q07889 1333 aaPredicted RBP12.64□□□□□ -0.39
RFFL-212ENST00000584655 DNAJC10Q8IXB1 793 aa12.64□□□□□ -0.39
RFFL-212ENST00000584655 PHKG2P15735 406 aa12.63□□□□□ -0.39
RFFL-212ENST00000584655 ANKRD44Q8N8A2 993 aa12.63□□□□□ -0.39
RFFL-212ENST00000584655 BICC1Q9H694 974 aaKnown RBP12.63□□□□□ -0.39
RFFL-212ENST00000584655 IQSEC3Q9UPP2 1182 aaPredicted RBP12.63□□□□□ -0.39
RFFL-212ENST00000584655 LMTK3Q96Q04 1460 aa12.63□□□□□ -0.39
RFFL-212ENST00000584655 GNAI3P08754 354 aa12.63□□□□□ -0.39
RFFL-212ENST00000584655 HDAC1Q13547 482 aaPredicted RBP12.63□□□□□ -0.39
RFFL-212ENST00000584655 TMOD3Q9NYL9 352 aa12.63□□□□□ -0.39
RFFL-212ENST00000584655 UBR1Q8IWV7 1749 aa12.63□□□□□ -0.39
RFFL-212ENST00000584655 CDK12Q9NYV4 1490 aaPredicted RBP12.63□□□□□ -0.39
RFFL-212ENST00000584655 G3BP1Q13283 466 aaKnown RBP eCLIP12.62□□□□□ -0.39
RFFL-212ENST00000584655 AMOTQ4VCS5 1084 aa12.62□□□□□ -0.39
RFFL-212ENST00000584655 GORABQ5T7V8 394 aa12.62□□□□□ -0.39
RFFL-212ENST00000584655 PIK3R4Q99570 1358 aa12.62□□□□□ -0.39
RFFL-212ENST00000584655 TOM1O60784 492 aa12.62□□□□□ -0.39
RFFL-212ENST00000584655 NEK4P51957 841 aa12.62□□□□□ -0.39
RFFL-212ENST00000584655 ANKRD13DQ6ZTN6 518 aa12.62□□□□□ -0.39
RFFL-212ENST00000584655 GCC1Q96CN9 775 aa12.62□□□□□ -0.39
RFFL-212ENST00000584655 SUCLG2Q96I99 432 aa12.62□□□□□ -0.39
RFFL-212ENST00000584655 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP12.62□□□□□ -0.39
RFFL-212ENST00000584655 ABCC4O15439 1325 aa12.62□□□□□ -0.39
RFFL-212ENST00000584655 MEX3CQ5U5Q3 659 aaKnown RBP12.61□□□□□ -0.39
RFFL-212ENST00000584655 TLR7Q9NYK1 1049 aaKnown RBP12.61□□□□□ -0.39
RFFL-212ENST00000584655 C1orf167Q5SNV9 1468 aa12.61□□□□□ -0.39
RFFL-212ENST00000584655 PHF14O94880 888 aa12.61□□□□□ -0.39
RFFL-212ENST00000584655 CASC1Q6TDU7 716 aa12.61□□□□□ -0.39
RFFL-212ENST00000584655 MX1P20591 662 aa12.6□□□□□ -0.39
RFFL-212ENST00000584655 GTF2E1P29083 439 aaPredicted RBP12.6□□□□□ -0.39
RFFL-212ENST00000584655 TIMM10P62072 90 aa12.6□□□□□ -0.39
RFFL-212ENST00000584655 EPHA10Q5JZY3 1008 aa12.6□□□□□ -0.39
RFFL-212ENST00000584655 SLC52A2Q9HAB3 445 aa12.6□□□□□ -0.39
RFFL-212ENST00000584655 RTL1A6NKG5 1358 aa12.6□□□□□ -0.39
RFFL-212ENST00000584655 SHPRHQ149N8 1683 aa12.6□□□□□ -0.39
RFFL-212ENST00000584655 INTS3Q68E01 1043 aaKnown RBP12.6□□□□□ -0.39
RFFL-212ENST00000584655 LMBR1LQ6UX01 489 aa12.6□□□□□ -0.39
RFFL-212ENST00000584655 CHMP4BQ9H444 224 aaKnown RBP12.6□□□□□ -0.39
RFFL-212ENST00000584655 JAG2Q9Y219 1238 aa12.6□□□□□ -0.39
RFFL-212ENST00000584655 KCNQ2O43526 872 aa12.6□□□□□ -0.39
RFFL-212ENST00000584655 CDC45O75419 566 aa12.6□□□□□ -0.39
RFFL-212ENST00000584655 DDX58O95786 925 aaKnown RBP12.6□□□□□ -0.39
RFFL-212ENST00000584655 IL2RBP14784 551 aa12.6□□□□□ -0.39
RFFL-212ENST00000584655 PDE1AP54750 535 aa12.6□□□□□ -0.39
RFFL-212ENST00000584655 DCTPP1Q9H773 170 aa12.6□□□□□ -0.39
RFFL-212ENST00000584655 SLC4A8Q2Y0W8 1093 aa12.59□□□□□ -0.39
RFFL-212ENST00000584655 TECPR2O15040 1411 aa12.59□□□□□ -0.39
RFFL-212ENST00000584655 ARHGEF10O15013 1369 aa12.59□□□□□ -0.39
RFFL-212ENST00000584655 FKBP4Q02790 459 aaKnown RBP eCLIP12.59□□□□□ -0.39
RFFL-212ENST00000584655 RAB11FIP4Q86YS3 637 aa12.59□□□□□ -0.39
RFFL-212ENST00000584655 RPAP2Q8IXW5 612 aaPredicted RBP12.59□□□□□ -0.39
RFFL-212ENST00000584655 FMNL2Q96PY5 1086 aa12.59□□□□□ -0.39
RFFL-212ENST00000584655 CLASRPQ8N2M8 674 aaKnown RBP12.59□□□□□ -0.39
RFFL-212ENST00000584655 RHPN1Q8TCX5 695 aa12.59□□□□□ -0.39
RFFL-212ENST00000584655 SPATA31A3Q5VYP0 1347 aa12.58□□□□□ -0.4
RFFL-212ENST00000584655 DDX46Q7L014 1031 aaKnown RBP12.58□□□□□ -0.4
RFFL-212ENST00000584655 PTF1AQ7RTS3 328 aa12.58□□□□□ -0.4
RFFL-212ENST00000584655 PXDNQ92626 1479 aa12.58□□□□□ -0.4
RFFL-212ENST00000584655 EXOC5O00471 708 aa12.58□□□□□ -0.4
RFFL-212ENST00000584655 STK3Q13188 491 aa12.58□□□□□ -0.4
RFFL-212ENST00000584655 TBC1D32Q96NH3 1257 aa12.58□□□□□ -0.4
RFFL-212ENST00000584655 CRB1P82279 1406 aa12.58□□□□□ -0.4
RFFL-212ENST00000584655 USP31Q70CQ4 1352 aa12.58□□□□□ -0.4
RFFL-212ENST00000584655 FGD1P98174 961 aa12.58□□□□□ -0.4
RFFL-212ENST00000584655 ARHGAP45Q92619 1136 aa12.58□□□□□ -0.4
RFFL-212ENST00000584655 SNRPA1P09661 255 aaKnown RBP12.57□□□□□ -0.4
RFFL-212ENST00000584655 LRRC2Q9BYS8 371 aa12.57□□□□□ -0.4
RFFL-212ENST00000584655 DIAPH3Q9NSV4 1193 aa12.57□□□□□ -0.4
RFFL-212ENST00000584655 PTPRCP08575 1304 aa12.57□□□□□ -0.4
RFFL-212ENST00000584655 TTC22Q5TAA0 569 aa12.57□□□□□ -0.4
RFFL-212ENST00000584655 KIAA1211Q6ZU35 1233 aa12.57□□□□□ -0.4
RFFL-212ENST00000584655 FSD1Q9BTV5 496 aa12.57□□□□□ -0.4
RFFL-212ENST00000584655 IL25Q9H293 177 aa12.57□□□□□ -0.4
RFFL-212ENST00000584655 GRM8O00222 908 aa12.56□□□□□ -0.4
RFFL-212ENST00000584655 HCLS1P14317 486 aaPredicted RBP12.56□□□□□ -0.4
RFFL-212ENST00000584655 KSR2Q6VAB6 950 aa12.56□□□□□ -0.4
RFFL-212ENST00000584655 BEND3Q5T5X7 828 aa12.56□□□□□ -0.4
RFFL-212ENST00000584655 CCDC129Q6ZRS4 1044 aa12.56□□□□□ -0.4
RFFL-212ENST00000584655 MPNDQ8N594 471 aa12.56□□□□□ -0.4
RFFL-212ENST00000584655 CERKQ8TCT0 537 aa12.56□□□□□ -0.4
RFFL-212ENST00000584655 GDPD2Q9HCC8 539 aa12.56□□□□□ -0.4
RFFL-212ENST00000584655 MED14O60244 1454 aa12.55□□□□□ -0.4
RFFL-212ENST00000584655 ZGPATQ8N5A5 531 aaKnown RBP12.55□□□□□ -0.4
RFFL-212ENST00000584655 PALD1Q9ULE6 856 aa12.55□□□□□ -0.4
RFFL-212ENST00000584655 ATP8B2P98198 1209 aa12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms