RNA–Protein interactions for RNA: ENST00000580095.5

TOP3A-209, Transcript of DNA topoisomerase III alpha, humanhuman

TSL 1 (best)

Gene TOP3A, Length 2,929 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-209ENST00000580095 SOS1Q07889 1333 aaPredicted RBP12.81□□□□□ -0.36
TOP3A-209ENST00000580095 PRPF40AO75400 957 aaKnown RBP12.81□□□□□ -0.36
TOP3A-209ENST00000580095 GOLGA6L22H0YM25 854 aa12.81□□□□□ -0.36
TOP3A-209ENST00000580095 TMX3Q96JJ7 454 aa12.81□□□□□ -0.36
TOP3A-209ENST00000580095 RBM27Q9P2N5 1060 aaKnown RBP12.81□□□□□ -0.36
TOP3A-209ENST00000580095 FMN2Q9NZ56 1722 aa12.8□□□□□ -0.36
TOP3A-209ENST00000580095 ANKLE2Q86XL3 938 aa12.8□□□□□ -0.36
TOP3A-209ENST00000580095 AXIN2Q9Y2T1 843 aa12.8□□□□□ -0.36
TOP3A-209ENST00000580095 AIMP1Q12904 312 aaKnown RBP12.79□□□□□ -0.36
TOP3A-209ENST00000580095 PA2G4Q9UQ80 394 aaKnown RBP12.79□□□□□ -0.36
TOP3A-209ENST00000580095 GCP02774 474 aa12.79□□□□□ -0.36
TOP3A-209ENST00000580095 OS9Q13438 667 aaPredicted RBP12.79□□□□□ -0.36
TOP3A-209ENST00000580095 CWF19L2Q2TBE0 894 aaKnown RBP12.79□□□□□ -0.36
TOP3A-209ENST00000580095 ZC3H6P61129 1189 aaKnown RBP12.78□□□□□ -0.36
TOP3A-209ENST00000580095 RHPN1Q8TCX5 695 aa12.78□□□□□ -0.36
TOP3A-209ENST00000580095 DNAAF4Q8WXU2 420 aa12.78□□□□□ -0.36
TOP3A-209ENST00000580095 DDX17Q92841 729 aaKnown RBP12.78□□□□□ -0.36
TOP3A-209ENST00000580095 SSH3Q8TE77 659 aa12.78□□□□□ -0.36
TOP3A-209ENST00000580095 NSFL1CQ9UNZ2 370 aaKnown RBP12.78□□□□□ -0.36
TOP3A-209ENST00000580095 ANKARQ7Z5J8 1434 aa12.78□□□□□ -0.36
TOP3A-209ENST00000580095 CYP2E1P05181 493 aaPredicted RBP12.78□□□□□ -0.36
TOP3A-209ENST00000580095 NUCB2P80303 420 aa12.78□□□□□ -0.36
TOP3A-209ENST00000580095 SKOR2Q2VWA4 1001 aaPredicted RBP12.78□□□□□ -0.36
TOP3A-209ENST00000580095 BEND3Q5T5X7 828 aa12.78□□□□□ -0.36
TOP3A-209ENST00000580095 DDX54Q8TDD1 881 aaKnown RBP12.78□□□□□ -0.36
TOP3A-209ENST00000580095 LMBRD1Q9NUN5 540 aa12.78□□□□□ -0.36
TOP3A-209ENST00000580095 ERBB4Q15303 1308 aa12.77□□□□□ -0.36
TOP3A-209ENST00000580095 PIP4K2AP48426 406 aaPredicted RBP12.77□□□□□ -0.36
TOP3A-209ENST00000580095 SPG7Q9UQ90 795 aa12.77□□□□□ -0.36
TOP3A-209ENST00000580095 CPA1P15085 419 aa12.77□□□□□ -0.37
TOP3A-209ENST00000580095 SLC39A6Q13433 755 aa12.77□□□□□ -0.37
TOP3A-209ENST00000580095 CWC27Q6UX04 472 aaKnown RBP12.77□□□□□ -0.37
TOP3A-209ENST00000580095 MAP3K2Q9Y2U5 619 aa12.77□□□□□ -0.37
TOP3A-209ENST00000580095 KLHL40Q2TBA0 621 aa12.76□□□□□ -0.37
TOP3A-209ENST00000580095 ANKRD24Q8TF21 1146 aa12.76□□□□□ -0.37
TOP3A-209ENST00000580095 GDPD2Q9HCC8 539 aa12.76□□□□□ -0.37
TOP3A-209ENST00000580095 CEMIPQ8WUJ3 1361 aa12.76□□□□□ -0.37
TOP3A-209ENST00000580095 C1orf141Q5JVX7 400 aa12.76□□□□□ -0.37
TOP3A-209ENST00000580095 GPT2Q8TD30 523 aa12.76□□□□□ -0.37
TOP3A-209ENST00000580095 JARID2Q92833 1246 aaPredicted RBP12.76□□□□□ -0.37
TOP3A-209ENST00000580095 STAP2Q9UGK3 403 aa12.76□□□□□ -0.37
TOP3A-209ENST00000580095 PI4K2BQ8TCG2 481 aa12.75□□□□□ -0.37
TOP3A-209ENST00000580095 C9orf78Q9NZ63 289 aaPredicted RBP12.75□□□□□ -0.37
TOP3A-209ENST00000580095 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP12.75□□□□□ -0.37
TOP3A-209ENST00000580095 PLEKHO1Q53GL0 409 aaPredicted RBP12.75□□□□□ -0.37
TOP3A-209ENST00000580095 KLHL34Q8N239 644 aa12.75□□□□□ -0.37
TOP3A-209ENST00000580095 ADCY9O60503 1353 aa12.75□□□□□ -0.37
TOP3A-209ENST00000580095 PXDNQ92626 1479 aa12.75□□□□□ -0.37
TOP3A-209ENST00000580095 RNMTO43148 476 aaKnown RBP12.75□□□□□ -0.37
TOP3A-209ENST00000580095 XRN1Q8IZH2 1706 aaKnown RBP12.74□□□□□ -0.37
TOP3A-209ENST00000580095 MCCP23508 829 aa12.74□□□□□ -0.37
TOP3A-209ENST00000580095 POLA2Q14181 598 aa12.74□□□□□ -0.37
TOP3A-209ENST00000580095 ZSCAN23Q3MJ62 389 aa12.74□□□□□ -0.37
TOP3A-209ENST00000580095 AKAP4Q5JQC9 854 aa12.74□□□□□ -0.37
TOP3A-209ENST00000580095 CWC22Q9HCG8 908 aaKnown RBP12.74□□□□□ -0.37
TOP3A-209ENST00000580095 MYL6BP14649 208 aa12.74□□□□□ -0.37
TOP3A-209ENST00000580095 NASPP49321 788 aaPredicted RBP12.74□□□□□ -0.37
TOP3A-209ENST00000580095 CLEC17AQ6ZS10 378 aa12.74□□□□□ -0.37
TOP3A-209ENST00000580095 RASEFQ8IZ41 740 aa12.74□□□□□ -0.37
TOP3A-209ENST00000580095 KLHDC4Q8TBB5 520 aa12.74□□□□□ -0.37
TOP3A-209ENST00000580095 SIL1Q9H173 461 aa12.74□□□□□ -0.37
TOP3A-209ENST00000580095 ARHGEF25Q86VW2 580 aa12.73□□□□□ -0.37
TOP3A-209ENST00000580095 MARF1Q9Y4F3 1742 aaKnown RBP12.73□□□□□ -0.37
TOP3A-209ENST00000580095 GIGYF1O75420 1035 aaPredicted RBP12.73□□□□□ -0.37
TOP3A-209ENST00000580095 KCNH5Q8NCM2 988 aa12.73□□□□□ -0.37
TOP3A-209ENST00000580095 CABLES1Q8TDN4 633 aa12.73□□□□□ -0.37
TOP3A-209ENST00000580095 KIF1BPQ96EK5 621 aa12.73□□□□□ -0.37
TOP3A-209ENST00000580095 FAM208AQ9UK61 1670 aaKnown RBP12.72□□□□□ -0.37
TOP3A-209ENST00000580095 TRIM44Q96DX7 344 aaPredicted RBP12.72□□□□□ -0.37
TOP3A-209ENST00000580095 PRIM1P49642 420 aaKnown RBP12.72□□□□□ -0.37
TOP3A-209ENST00000580095 BABAM1Q9NWV8 329 aa12.72□□□□□ -0.37
TOP3A-209ENST00000580095 DBF4Q9UBU7 674 aaPredicted RBP12.72□□□□□ -0.37
TOP3A-209ENST00000580095 LRRC37A3O60309 1634 aa12.72□□□□□ -0.37
TOP3A-209ENST00000580095 NLRP2Q9NX02 1062 aa12.72□□□□□ -0.37
TOP3A-209ENST00000580095 TMEM63CQ9P1W3 806 aa12.72□□□□□ -0.37
TOP3A-209ENST00000580095 SYCE3A1L190 88 aa12.71□□□□□ -0.37
TOP3A-209ENST00000580095 RBSNQ9H1K0 784 aa12.71□□□□□ -0.37
TOP3A-209ENST00000580095 RAB11FIP3O75154 756 aa12.71□□□□□ -0.38
TOP3A-209ENST00000580095 KRT28Q7Z3Y7 464 aa12.71□□□□□ -0.38
TOP3A-209ENST00000580095 RNF214Q8ND24 703 aa12.71□□□□□ -0.38
TOP3A-209ENST00000580095 CCDC8Q9H0W5 538 aaPredicted RBP12.71□□□□□ -0.38
TOP3A-209ENST00000580095 ESPNB1AK53 854 aa12.7□□□□□ -0.38
TOP3A-209ENST00000580095 SGSM2O43147 1006 aa12.7□□□□□ -0.38
TOP3A-209ENST00000580095 COL9A3Q14050 684 aaPredicted RBP12.7□□□□□ -0.38
TOP3A-209ENST00000580095 HSP90AA2PQ14568 343 aaPredicted RBP12.7□□□□□ -0.38
TOP3A-209ENST00000580095 PROSER2Q86WR7 435 aaPredicted RBP12.7□□□□□ -0.38
TOP3A-209ENST00000580095 NFAT5O94916 1531 aa12.7□□□□□ -0.38
TOP3A-209ENST00000580095 KDM4FA0A1W2PPD8 638 aa12.7□□□□□ -0.38
TOP3A-209ENST00000580095 PTMSP20962 102 aa12.7□□□□□ -0.38
TOP3A-209ENST00000580095 PTH1RQ03431 593 aa12.7□□□□□ -0.38
TOP3A-209ENST00000580095 NAP1L5Q96NT1 182 aaPredicted RBP12.7□□□□□ -0.38
TOP3A-209ENST00000580095 SNX14Q9Y5W7 946 aa12.7□□□□□ -0.38
TOP3A-209ENST00000580095 HSPA4P34932 840 aa12.69□□□□□ -0.38
TOP3A-209ENST00000580095 CHRNA2Q15822 529 aa12.69□□□□□ -0.38
TOP3A-209ENST00000580095 AACSQ86V21 672 aa12.69□□□□□ -0.38
TOP3A-209ENST00000580095 NFATC2IPQ8NCF5 419 aa12.69□□□□□ -0.38
TOP3A-209ENST00000580095 SUCLG2Q96I99 432 aa12.69□□□□□ -0.38
TOP3A-209ENST00000580095 TLR7Q9NYK1 1049 aaKnown RBP12.69□□□□□ -0.38
TOP3A-209ENST00000580095 RGPD2P0DJD1 1756 aa12.69□□□□□ -0.38
TOP3A-209ENST00000580095 RRP9O43818 475 aaKnown RBP12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms