RNA–Protein interactions for RNA: ENST00000567160.1

CLN3-226, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 616 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-226ENST00000567160 ANKRD26Q9UPS8 1709 aa15.4■□□□□ 0.06
CLN3-226ENST00000567160 CNTNAP1P78357 1384 aa15.4■□□□□ 0.06
CLN3-226ENST00000567160 CRKLP46109 303 aaKnown RBP15.4■□□□□ 0.06
CLN3-226ENST00000567160 DDX10Q13206 875 aaKnown RBP15.4■□□□□ 0.06
CLN3-226ENST00000567160 FAM161AQ3B820 660 aa15.4■□□□□ 0.06
CLN3-226ENST00000567160 EYA1Q99502 592 aa15.4■□□□□ 0.06
CLN3-226ENST00000567160 ZPR1O75312 459 aa15.39■□□□□ 0.05
CLN3-226ENST00000567160 TTLL6Q8N841 843 aa15.39■□□□□ 0.05
CLN3-226ENST00000567160 POTECB2RU33 542 aa15.38■□□□□ 0.05
CLN3-226ENST00000567160 TM4SF1P30408 202 aa15.38■□□□□ 0.05
CLN3-226ENST00000567160 CABP4P57796 275 aa15.38■□□□□ 0.05
CLN3-226ENST00000567160 DICER1Q9UPY3 1922 aaKnown RBP15.38■□□□□ 0.05
CLN3-226ENST00000567160 PANK3Q9H999 370 aa15.37■□□□□ 0.05
CLN3-226ENST00000567160 AFDNP55196 1824 aaKnown RBP15.37■□□□□ 0.05
CLN3-226ENST00000567160 PTCD1O75127 700 aaKnown RBP15.36■□□□□ 0.05
CLN3-226ENST00000567160 ABHD8Q96I13 439 aa15.36■□□□□ 0.05
CLN3-226ENST00000567160 LBX1P52954 281 aa15.35■□□□□ 0.05
CLN3-226ENST00000567160 ERFEQ4G0M1 354 aa15.35■□□□□ 0.05
CLN3-226ENST00000567160 NRXN2Q9P2S2 1712 aa15.34■□□□□ 0.05
CLN3-226ENST00000567160 H0YIN7 160 aa15.34■□□□□ 0.05
CLN3-226ENST00000567160 NFKBIEO00221 500 aa15.34■□□□□ 0.05
CLN3-226ENST00000567160 MLLT1Q03111 559 aaPredicted RBP15.34■□□□□ 0.05
CLN3-226ENST00000567160 USPL1Q5W0Q7 1092 aa15.34■□□□□ 0.05
CLN3-226ENST00000567160 WBP1LQ9NX94 342 aa15.34■□□□□ 0.05
CLN3-226ENST00000567160 TJP1Q07157 1748 aa15.34■□□□□ 0.05
CLN3-226ENST00000567160 VIRMAQ69YN4 1812 aaKnown RBP15.33■□□□□ 0.05
CLN3-226ENST00000567160 ADAMTS7Q9UKP4 1686 aa15.33■□□□□ 0.04
CLN3-226ENST00000567160 PLEKHO1Q53GL0 409 aaPredicted RBP15.33■□□□□ 0.04
CLN3-226ENST00000567160 C2CD5Q86YS7 1000 aa15.33■□□□□ 0.04
CLN3-226ENST00000567160 CARD14Q9BXL6 1004 aa15.33■□□□□ 0.04
CLN3-226ENST00000567160 IQCA1LA6NCM1 817 aa15.32■□□□□ 0.04
CLN3-226ENST00000567160 TMEM88BA6NKF7 163 aa15.32■□□□□ 0.04
CLN3-226ENST00000567160 VEGFBP49765 207 aa15.32■□□□□ 0.04
CLN3-226ENST00000567160 MTHFSP49914 203 aa15.31■□□□□ 0.04
CLN3-226ENST00000567160 NFIXQ14938 502 aa15.31■□□□□ 0.04
CLN3-226ENST00000567160 AMOTQ4VCS5 1084 aa15.31■□□□□ 0.04
CLN3-226ENST00000567160 C1orf141Q5JVX7 400 aa15.31■□□□□ 0.04
CLN3-226ENST00000567160 ZNF530Q6P9A1 599 aaPredicted RBP15.31■□□□□ 0.04
CLN3-226ENST00000567160 INTS5Q6P9B9 1019 aaKnown RBP15.31■□□□□ 0.04
CLN3-226ENST00000567160 LDHDQ86WU2 507 aa15.31■□□□□ 0.04
CLN3-226ENST00000567160 PDZRN3Q9UPQ7 1066 aa15.31■□□□□ 0.04
CLN3-226ENST00000567160 PASKQ96RG2 1323 aa15.31■□□□□ 0.04
CLN3-226ENST00000567160 SCN4AP35499 1836 aa15.31■□□□□ 0.04
CLN3-226ENST00000567160 FER1L6Q2WGJ9 1857 aa15.31■□□□□ 0.04
CLN3-226ENST00000567160 SERPINB2P05120 415 aa15.3■□□□□ 0.04
CLN3-226ENST00000567160 MAP2K1Q02750 393 aaPredicted RBP15.3■□□□□ 0.04
CLN3-226ENST00000567160 SOS1Q07889 1333 aaPredicted RBP15.29■□□□□ 0.04
CLN3-226ENST00000567160 POTEIP0CG38 1075 aa15.29■□□□□ 0.04
CLN3-226ENST00000567160 POTEJP0CG39 1038 aa15.29■□□□□ 0.04
CLN3-226ENST00000567160 HSPA8P11142 646 aaKnown RBP15.29■□□□□ 0.04
CLN3-226ENST00000567160 CNGB1Q14028 1251 aaPredicted RBP15.29■□□□□ 0.04
CLN3-226ENST00000567160 EIF4A2Q14240 407 aaKnown RBP15.29■□□□□ 0.04
CLN3-226ENST00000567160 NFATC2IPQ8NCF5 419 aa15.29■□□□□ 0.04
CLN3-226ENST00000567160 NARFQ9UHQ1 456 aa15.29■□□□□ 0.04
CLN3-226ENST00000567160 KNSTRNQ9Y448 316 aa15.29■□□□□ 0.04
CLN3-226ENST00000567160 LTBP3Q9NS15 1303 aa15.28■□□□□ 0.04
CLN3-226ENST00000567160 CCDC85CA6NKD9 419 aa15.28■□□□□ 0.04
CLN3-226ENST00000567160 DDNO94850 711 aaPredicted RBP15.28■□□□□ 0.04
CLN3-226ENST00000567160 ZNF622Q969S3 477 aaKnown RBP eCLIP15.28■□□□□ 0.04
CLN3-226ENST00000567160 TAOK3Q9H2K8 898 aa15.28■□□□□ 0.04
CLN3-226ENST00000567160 POLKQ9UBT6 870 aa15.28■□□□□ 0.04
CLN3-226ENST00000567160 COL15A1P39059 1388 aa15.27■□□□□ 0.04
CLN3-226ENST00000567160 PER1O15534 1290 aaPredicted RBP15.27■□□□□ 0.04
CLN3-226ENST00000567160 C21orf2O43822 256 aa15.27■□□□□ 0.04
CLN3-226ENST00000567160 RGS19P49795 217 aa15.27■□□□□ 0.04
CLN3-226ENST00000567160 PDE6BP35913 854 aa15.26■□□□□ 0.03
CLN3-226ENST00000567160 DEFB115Q30KQ5 88 aa15.26■□□□□ 0.03
CLN3-226ENST00000567160 RASSF10A6NK89 507 aa15.25■□□□□ 0.03
CLN3-226ENST00000567160 SOGA3Q5TF21 947 aa15.25■□□□□ 0.03
CLN3-226ENST00000567160 DNAJC10Q8IXB1 793 aa15.25■□□□□ 0.03
CLN3-226ENST00000567160 L3MBTL3Q96JM7 780 aaPredicted RBP15.25■□□□□ 0.03
CLN3-226ENST00000567160 BEGAINQ9BUH8 593 aa15.25■□□□□ 0.03
CLN3-226ENST00000567160 TAF1DQ9H5J8 278 aaPredicted RBP15.25■□□□□ 0.03
CLN3-226ENST00000567160 ZNF219Q9P2Y4 722 aaPredicted RBP15.25■□□□□ 0.03
CLN3-226ENST00000567160 CARMIL3Q8ND23 1372 aa15.24■□□□□ 0.03
CLN3-226ENST00000567160 SCN11AQ9UI33 1791 aa15.24■□□□□ 0.03
CLN3-226ENST00000567160 CC2D1BQ5T0F9 858 aaKnown RBP15.24■□□□□ 0.03
CLN3-226ENST00000567160 BRIP1Q9BX63 1249 aa15.24■□□□□ 0.03
CLN3-226ENST00000567160 WDR33Q9C0J8 1336 aaKnown RBP15.23■□□□□ 0.03
CLN3-226ENST00000567160 ANKRD31Q8N7Z5 1873 aa15.23■□□□□ 0.03
CLN3-226ENST00000567160 ITGBL1O95965 494 aaPredicted RBP15.23■□□□□ 0.03
CLN3-226ENST00000567160 CYP19A1P11511 503 aaPredicted RBP15.23■□□□□ 0.03
CLN3-226ENST00000567160 EAPPQ56P03 285 aaPredicted RBP15.23■□□□□ 0.03
CLN3-226ENST00000567160 AMER1Q5JTC6 1135 aaPredicted RBP15.23■□□□□ 0.03
CLN3-226ENST00000567160 CLEC11AQ9Y240 323 aa15.23■□□□□ 0.03
CLN3-226ENST00000567160 DIEXFQ68CQ4 756 aaKnown RBP15.22■□□□□ 0.03
CLN3-226ENST00000567160 CNKSR1Q969H4 720 aa15.22■□□□□ 0.03
CLN3-226ENST00000567160 BCL2L12Q9HB09 334 aa15.22■□□□□ 0.03
CLN3-226ENST00000567160 ABT1Q9ULW3 272 aaKnown RBP15.22■□□□□ 0.03
CLN3-226ENST00000567160 COL11A2P13942 1736 aaPredicted RBP15.22■□□□□ 0.03
CLN3-226ENST00000567160 CACNA1SQ13698 1873 aa15.21■□□□□ 0.03
CLN3-226ENST00000567160 BICDL1Q6ZP65 573 aa15.21■□□□□ 0.03
CLN3-226ENST00000567160 PNMA8AQ86V59 439 aaPredicted RBP15.21■□□□□ 0.03
CLN3-226ENST00000567160 HACL1Q9UJ83 578 aa15.21■□□□□ 0.03
CLN3-226ENST00000567160 ZBTB1Q9Y2K1 713 aa15.21■□□□□ 0.03
CLN3-226ENST00000567160 A0A087WZG4 1122 aa15.2■□□□□ 0.02
CLN3-226ENST00000567160 TNNT2P45379 298 aaPredicted RBP15.2■□□□□ 0.02
CLN3-226ENST00000567160 ARFGEF2Q9Y6D5 1785 aa15.2■□□□□ 0.02
CLN3-226ENST00000567160 NPHP1O15259 732 aa15.19■□□□□ 0.02
CLN3-226ENST00000567160 ECE1P42892 770 aa15.19■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms