RNA–Protein interactions for RNA: ENST00000563498.1

NME3-204, Transcript of NME/NM23 nucleoside diphosphate kinase 3, humanhuman

TSL 2 BASIC

Gene NME3, Length 920 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NME3-204ENST00000563498 HMOX1P09601 288 aa25.33■■□□□ 1.65
NME3-204ENST00000563498 SLC39A6Q13433 755 aa25.33■■□□□ 1.65
NME3-204ENST00000563498 DNAJC5GQ8N7S2 189 aa25.33■■□□□ 1.65
NME3-204ENST00000563498 KIF7Q2M1P5 1343 aa25.33■■□□□ 1.64
NME3-204ENST00000563498 MTHFSDQ2M296 383 aaKnown RBP25.32■■□□□ 1.64
NME3-204ENST00000563498 CCER1Q8TC90 406 aaPredicted RBP25.32■■□□□ 1.64
NME3-204ENST00000563498 RNF181Q9P0P0 153 aa25.32■■□□□ 1.64
NME3-204ENST00000563498 NRXN2Q9P2S2 1712 aa25.32■■□□□ 1.64
NME3-204ENST00000563498 DIAPH1O60610 1272 aaKnown RBP25.31■■□□□ 1.64
NME3-204ENST00000563498 NFIXQ14938 502 aa25.31■■□□□ 1.64
NME3-204ENST00000563498 C16orf71Q8IYS4 520 aaPredicted RBP25.31■■□□□ 1.64
NME3-204ENST00000563498 ZBTB1Q9Y2K1 713 aa25.31■■□□□ 1.64
NME3-204ENST00000563498 UBR2Q8IWV8 1755 aa25.29■■□□□ 1.64
NME3-204ENST00000563498 AFDNP55196 1824 aaKnown RBP25.29■■□□□ 1.64
NME3-204ENST00000563498 PER1O15534 1290 aaPredicted RBP25.29■■□□□ 1.64
NME3-204ENST00000563498 FSTL1Q12841 308 aa25.29■■□□□ 1.64
NME3-204ENST00000563498 SBF1O95248 1867 aa25.29■■□□□ 1.64
NME3-204ENST00000563498 ZC3H4Q9UPT8 1303 aaKnown RBP25.29■■□□□ 1.64
NME3-204ENST00000563498 BCL2L12Q9HB09 334 aa25.28■■□□□ 1.64
NME3-204ENST00000563498 TNRC6CQ9HCJ0 1690 aaKnown RBP25.28■■□□□ 1.64
NME3-204ENST00000563498 WDR90Q96KV7 1748 aa25.28■■□□□ 1.64
NME3-204ENST00000563498 DLEC1Q9Y238 1755 aa25.27■■□□□ 1.64
NME3-204ENST00000563498 SERPINB2P05120 415 aa25.26■■□□□ 1.63
NME3-204ENST00000563498 STARD3NLO95772 234 aa25.25■■□□□ 1.63
NME3-204ENST00000563498 TTC5Q8N0Z6 440 aa25.24■■□□□ 1.63
NME3-204ENST00000563498 RRAGCQ9HB90 399 aa25.24■■□□□ 1.63
NME3-204ENST00000563498 EIF5P55010 431 aaKnown RBP25.23■■□□□ 1.63
NME3-204ENST00000563498 CC2D1BQ5T0F9 858 aaKnown RBP25.23■■□□□ 1.63
NME3-204ENST00000563498 TTLL6Q8N841 843 aa25.23■■□□□ 1.63
NME3-204ENST00000563498 COL3A1P02461 1466 aaPredicted RBP25.22■■□□□ 1.63
NME3-204ENST00000563498 NPC1L1Q9UHC9 1359 aa25.22■■□□□ 1.63
NME3-204ENST00000563498 A0A087WZG4 1122 aa25.22■■□□□ 1.63
NME3-204ENST00000563498 LMNB1P20700 586 aa25.22■■□□□ 1.63
NME3-204ENST00000563498 CANXP27824 592 aaKnown RBP25.22■■□□□ 1.63
NME3-204ENST00000563498 RASSF7Q02833 373 aa25.2■■□□□ 1.62
NME3-204ENST00000563498 C2CD5Q86YS7 1000 aa25.2■■□□□ 1.62
NME3-204ENST00000563498 TEX13AQ9BXU3 409 aaPredicted RBP25.2■■□□□ 1.62
NME3-204ENST00000563498 H0YIN7 160 aa25.19■■□□□ 1.62
NME3-204ENST00000563498 SMC1BQ8NDV3 1235 aa25.19■■□□□ 1.62
NME3-204ENST00000563498 GAS2L2Q8NHY3 880 aa25.19■■□□□ 1.62
NME3-204ENST00000563498 KLRG1Q96E93 195 aa25.19■■□□□ 1.62
NME3-204ENST00000563498 ZNF496Q96IT1 587 aaPredicted RBP25.19■■□□□ 1.62
NME3-204ENST00000563498 CARMIL3Q8ND23 1372 aa25.18■■□□□ 1.62
NME3-204ENST00000563498 HEG1Q9ULI3 1381 aa25.18■■□□□ 1.62
NME3-204ENST00000563498 GNAT3A8MTJ3 354 aa25.18■■□□□ 1.62
NME3-204ENST00000563498 TEFQ10587 303 aa25.18■■□□□ 1.62
NME3-204ENST00000563498 ZNF790Q6PG37 636 aa25.18■■□□□ 1.62
NME3-204ENST00000563498 PDZRN3Q9UPQ7 1066 aa25.18■■□□□ 1.62
NME3-204ENST00000563498 GLTPD2A6NH11 291 aa25.17■■□□□ 1.62
NME3-204ENST00000563498 PRELPP51888 382 aa25.17■■□□□ 1.62
NME3-204ENST00000563498 JMYQ8N9B5 988 aa25.17■■□□□ 1.62
NME3-204ENST00000563498 IL17REQ8NFR9 667 aa25.17■■□□□ 1.62
NME3-204ENST00000563498 SIPA1L3O60292 1781 aaPredicted RBP25.17■■□□□ 1.62
NME3-204ENST00000563498 SCN7AQ01118 1682 aa25.17■■□□□ 1.62
NME3-204ENST00000563498 U2SURPO15042 1029 aaKnown RBP25.15■■□□□ 1.62
NME3-204ENST00000563498 IL6STP40189 918 aaPredicted RBP25.15■■□□□ 1.62
NME3-204ENST00000563498 BICDL1Q6ZP65 573 aa25.15■■□□□ 1.62
NME3-204ENST00000563498 VEGFAP15692 232 aaPredicted RBP25.14■■□□□ 1.62
NME3-204ENST00000563498 HTRA3P83110 453 aa25.14■■□□□ 1.62
NME3-204ENST00000563498 TBC1D9BQ66K14 1250 aa25.14■■□□□ 1.62
NME3-204ENST00000563498 BRIP1Q9BX63 1249 aa25.14■■□□□ 1.62
NME3-204ENST00000563498 TIAM2Q8IVF5 1701 aa25.14■■□□□ 1.61
NME3-204ENST00000563498 NFKBIEO00221 500 aa25.13■■□□□ 1.61
NME3-204ENST00000563498 PDE6BP35913 854 aa25.13■■□□□ 1.61
NME3-204ENST00000563498 CEMIPQ8WUJ3 1361 aa25.13■■□□□ 1.61
NME3-204ENST00000563498 ANKRD31Q8N7Z5 1873 aa25.13■■□□□ 1.61
NME3-204ENST00000563498 FMNL2Q96PY5 1086 aa25.12■■□□□ 1.61
NME3-204ENST00000563498 PRR5LQ6MZQ0 368 aa25.11■■□□□ 1.61
NME3-204ENST00000563498 TBC1D2BQ9UPU7 963 aa25.1■■□□□ 1.61
NME3-204ENST00000563498 CCDC88AQ3V6T2 1871 aa25.09■■□□□ 1.61
NME3-204ENST00000563498 ZNF622Q969S3 477 aaKnown RBP eCLIP25.09■■□□□ 1.61
NME3-204ENST00000563498 NPM2Q86SE8 214 aaKnown RBP25.08■■□□□ 1.61
NME3-204ENST00000563498 ZNF330Q9Y3S2 320 aaPredicted RBP25.08■■□□□ 1.61
NME3-204ENST00000563498 COL11A2P13942 1736 aaPredicted RBP25.08■■□□□ 1.61
NME3-204ENST00000563498 CAMTA2O94983 1202 aa25.07■■□□□ 1.6
NME3-204ENST00000563498 DPY19L2Q6NUT2 758 aa25.07■■□□□ 1.6
NME3-204ENST00000563498 SETDB2Q96T68 719 aa25.07■■□□□ 1.6
NME3-204ENST00000563498 A1BGP04217 495 aa25.06■■□□□ 1.6
NME3-204ENST00000563498 CNBD1Q8NA66 436 aa25.06■■□□□ 1.6
NME3-204ENST00000563498 FER1L6Q2WGJ9 1857 aa25.06■■□□□ 1.6
NME3-204ENST00000563498 LTBP3Q9NS15 1303 aa25.06■■□□□ 1.6
NME3-204ENST00000563498 BTBD11A6QL63 1104 aa25.05■■□□□ 1.6
NME3-204ENST00000563498 C21orf2O43822 256 aa25.05■■□□□ 1.6
NME3-204ENST00000563498 PHACTR3Q96KR7 559 aa25.05■■□□□ 1.6
NME3-204ENST00000563498 RSPH6AQ9H0K4 717 aa25.05■■□□□ 1.6
NME3-204ENST00000563498 DICER1Q9UPY3 1922 aaKnown RBP25.04■■□□□ 1.6
NME3-204ENST00000563498 BCORQ6W2J9 1755 aa25.04■■□□□ 1.6
NME3-204ENST00000563498 PRKAR2BP31323 418 aa25.04■■□□□ 1.6
NME3-204ENST00000563498 CNKSR1Q969H4 720 aa25.04■■□□□ 1.6
NME3-204ENST00000563498 CFAP53Q96M91 514 aa25.04■■□□□ 1.6
NME3-204ENST00000563498 POTECB2RU33 542 aa25.03■■□□□ 1.6
NME3-204ENST00000563498 ST5P78524 1137 aa25.03■■□□□ 1.6
NME3-204ENST00000563498 CNGB1Q14028 1251 aaPredicted RBP25.03■■□□□ 1.6
NME3-204ENST00000563498 ERFEQ4G0M1 354 aa25.03■■□□□ 1.6
NME3-204ENST00000563498 STYK1Q6J9G0 422 aa25.03■■□□□ 1.6
NME3-204ENST00000563498 CCDC24Q8N4L8 307 aa25.03■■□□□ 1.6
NME3-204ENST00000563498 KCNQ3O43525 872 aa25.02■■□□□ 1.6
NME3-204ENST00000563498 DZIP3Q86Y13 1208 aaKnown RBP25.02■■□□□ 1.6
NME3-204ENST00000563498 TAOK3Q9H2K8 898 aa25.02■■□□□ 1.6
NME3-204ENST00000563498 NPHP1O15259 732 aa25.01■■□□□ 1.59
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms