RNA–Protein interactions for RNA: ENST00000563226.1

SMPD3-203, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 1 (best) BASIC

Gene SMPD3, Length 2,093 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-203ENST00000563226 MAP3K2Q9Y2U5 619 aa23.71■■□□□ 1.39
SMPD3-203ENST00000563226 CDC45O75419 566 aa23.7■■□□□ 1.38
SMPD3-203ENST00000563226 BECN1Q14457 450 aa23.7■■□□□ 1.38
SMPD3-203ENST00000563226 ZNF496Q96IT1 587 aaPredicted RBP23.7■■□□□ 1.38
SMPD3-203ENST00000563226 TBC1D2Q9BYX2 928 aa23.69■■□□□ 1.38
SMPD3-203ENST00000563226 IBTKQ9P2D0 1353 aaPredicted RBP23.69■■□□□ 1.38
SMPD3-203ENST00000563226 DDX21Q9NR30 783 aaKnown RBP eCLIP23.69■■□□□ 1.38
SMPD3-203ENST00000563226 KSR2Q6VAB6 950 aa23.68■■□□□ 1.38
SMPD3-203ENST00000563226 HYPKQ9NX55 129 aa23.68■■□□□ 1.38
SMPD3-203ENST00000563226 GLI3P10071 1580 aa23.68■■□□□ 1.38
SMPD3-203ENST00000563226 SHANK3Q9BYB0 1731 aa23.68■■□□□ 1.38
SMPD3-203ENST00000563226 RBM25P49756 843 aaKnown RBP23.68■■□□□ 1.38
SMPD3-203ENST00000563226 MYT1Q01538 1121 aa23.68■■□□□ 1.38
SMPD3-203ENST00000563226 SSH3Q8TE77 659 aa23.68■■□□□ 1.38
SMPD3-203ENST00000563226 PPP1R42Q7Z4L9 355 aa23.67■■□□□ 1.38
SMPD3-203ENST00000563226 LRRCC1Q9C099 1032 aa23.67■■□□□ 1.38
SMPD3-203ENST00000563226 HSP90AB1P08238 724 aaKnown RBP23.66■■□□□ 1.38
SMPD3-203ENST00000563226 STRN4Q9NRL3 753 aa23.66■■□□□ 1.38
SMPD3-203ENST00000563226 SALL3Q9BXA9 1300 aa23.66■■□□□ 1.38
SMPD3-203ENST00000563226 TUBGCP6Q96RT7 1819 aa23.66■■□□□ 1.38
SMPD3-203ENST00000563226 SDSP20132 328 aa23.66■■□□□ 1.38
SMPD3-203ENST00000563226 AIMP1Q12904 312 aaKnown RBP23.66■■□□□ 1.38
SMPD3-203ENST00000563226 PDE1AP54750 535 aa23.65■■□□□ 1.38
SMPD3-203ENST00000563226 POLA2Q14181 598 aa23.65■■□□□ 1.38
SMPD3-203ENST00000563226 CWF19L2Q2TBE0 894 aaKnown RBP23.65■■□□□ 1.38
SMPD3-203ENST00000563226 LARP1Q6PKG0 1096 aaKnown RBP23.65■■□□□ 1.38
SMPD3-203ENST00000563226 CABP4P57796 275 aa23.64■■□□□ 1.38
SMPD3-203ENST00000563226 TSHZ3Q63HK5 1081 aa23.64■■□□□ 1.38
SMPD3-203ENST00000563226 ZCRB1Q8TBF4 217 aaKnown RBP23.64■■□□□ 1.38
SMPD3-203ENST00000563226 MYL6BP14649 208 aa23.64■■□□□ 1.37
SMPD3-203ENST00000563226 TTC5Q8N0Z6 440 aa23.64■■□□□ 1.37
SMPD3-203ENST00000563226 OSBPL3Q9H4L5 887 aa23.64■■□□□ 1.37
SMPD3-203ENST00000563226 USP16Q9Y5T5 823 aa23.64■■□□□ 1.37
SMPD3-203ENST00000563226 PCDH11XQ9BZA7 1347 aa23.63■■□□□ 1.37
SMPD3-203ENST00000563226 PCDH11YQ9BZA8 1340 aa23.63■■□□□ 1.37
SMPD3-203ENST00000563226 CARD10Q9BWT7 1032 aa23.63■■□□□ 1.37
SMPD3-203ENST00000563226 SRGAP3O43295 1099 aa23.62■■□□□ 1.37
SMPD3-203ENST00000563226 ALDH1L1O75891 902 aa23.62■■□□□ 1.37
SMPD3-203ENST00000563226 SNRPA1P09661 255 aaKnown RBP23.61■■□□□ 1.37
SMPD3-203ENST00000563226 PIP4K2AP48426 406 aaPredicted RBP23.61■■□□□ 1.37
SMPD3-203ENST00000563226 LAMB4A4D0S4 1761 aa23.61■■□□□ 1.37
SMPD3-203ENST00000563226 IL2RBP14784 551 aa23.61■■□□□ 1.37
SMPD3-203ENST00000563226 FMNL2Q96PY5 1086 aa23.61■■□□□ 1.37
SMPD3-203ENST00000563226 KIF2CQ99661 725 aa23.6■■□□□ 1.37
SMPD3-203ENST00000563226 ROBO1Q9Y6N7 1651 aa23.6■■□□□ 1.37
SMPD3-203ENST00000563226 SURF6O75683 361 aaKnown RBP23.6■■□□□ 1.37
SMPD3-203ENST00000563226 DDX58O95786 925 aaKnown RBP23.6■■□□□ 1.37
SMPD3-203ENST00000563226 LRP10Q7Z4F1 713 aa23.6■■□□□ 1.37
SMPD3-203ENST00000563226 XAGE3Q8WTP9 111 aa23.6■■□□□ 1.37
SMPD3-203ENST00000563226 SLKQ9H2G2 1235 aaPredicted RBP23.6■■□□□ 1.37
SMPD3-203ENST00000563226 IL1RAPL2Q9NP60 686 aa23.6■■□□□ 1.37
SMPD3-203ENST00000563226 C9orf78Q9NZ63 289 aaPredicted RBP23.6■■□□□ 1.37
SMPD3-203ENST00000563226 MX1P20591 662 aa23.59■■□□□ 1.37
SMPD3-203ENST00000563226 EVA1CP58658 441 aa23.59■■□□□ 1.37
SMPD3-203ENST00000563226 RTL5Q5HYW3 569 aaPredicted RBP23.59■■□□□ 1.37
SMPD3-203ENST00000563226 LINS1Q8NG48 757 aa23.59■■□□□ 1.37
SMPD3-203ENST00000563226 UBR2Q8IWV8 1755 aa23.58■■□□□ 1.37
SMPD3-203ENST00000563226 IGKV5-2P06315 115 aa23.58■■□□□ 1.36
SMPD3-203ENST00000563226 COPS6Q7L5N1 327 aa23.58■■□□□ 1.36
SMPD3-203ENST00000563226 NFKBIBQ15653 356 aa23.57■■□□□ 1.36
SMPD3-203ENST00000563226 RIC3Q7Z5B4 369 aa23.57■■□□□ 1.36
SMPD3-203ENST00000563226 DDX54Q8TDD1 881 aaKnown RBP23.57■■□□□ 1.36
SMPD3-203ENST00000563226 PAPPAQ13219 1627 aa23.57■■□□□ 1.36
SMPD3-203ENST00000563226 TOGARAM1Q9Y4F4 1720 aa23.56■■□□□ 1.36
SMPD3-203ENST00000563226 ANTXR1Q9H6X2 564 aa23.56■■□□□ 1.36
SMPD3-203ENST00000563226 USP35Q9P2H5 1018 aa23.56■■□□□ 1.36
SMPD3-203ENST00000563226 MTX1Q13505 466 aa23.55■■□□□ 1.36
SMPD3-203ENST00000563226 NKX1-1Q15270 411 aaPredicted RBP23.55■■□□□ 1.36
SMPD3-203ENST00000563226 GRM8O00222 908 aa23.55■■□□□ 1.36
SMPD3-203ENST00000563226 RAB11FIP3O75154 756 aa23.55■■□□□ 1.36
SMPD3-203ENST00000563226 SPRYD3Q8NCJ5 442 aa23.55■■□□□ 1.36
SMPD3-203ENST00000563226 RHPN1Q8TCX5 695 aa23.55■■□□□ 1.36
SMPD3-203ENST00000563226 KAZALD1Q96I82 304 aa23.55■■□□□ 1.36
SMPD3-203ENST00000563226 SUCLG2Q96I99 432 aa23.55■■□□□ 1.36
SMPD3-203ENST00000563226 STAP2Q9UGK3 403 aa23.55■■□□□ 1.36
SMPD3-203ENST00000563226 NUTM1Q86Y26 1132 aa23.54■■□□□ 1.36
SMPD3-203ENST00000563226 BTG4Q9NY30 223 aa23.54■■□□□ 1.36
SMPD3-203ENST00000563226 KCPQ6ZWJ8 1503 aa23.54■■□□□ 1.36
SMPD3-203ENST00000563226 UTYO14607 1347 aa23.54■■□□□ 1.36
SMPD3-203ENST00000563226 ARFGEF2Q9Y6D5 1785 aa23.54■■□□□ 1.36
SMPD3-203ENST00000563226 ERVV-2B6SEH9 535 aa23.53■■□□□ 1.36
SMPD3-203ENST00000563226 MYD88Q99836 296 aa23.53■■□□□ 1.36
SMPD3-203ENST00000563226 AFDNP55196 1824 aaKnown RBP23.52■■□□□ 1.36
SMPD3-203ENST00000563226 NEURL1BA8MQ27 555 aa23.52■■□□□ 1.35
SMPD3-203ENST00000563226 HSCBQ8IWL3 235 aa23.52■■□□□ 1.35
SMPD3-203ENST00000563226 RBM42Q9BTD8 480 aaKnown RBP23.52■■□□□ 1.35
SMPD3-203ENST00000563226 METTL22Q9BUU2 404 aaPredicted RBP23.52■■□□□ 1.35
SMPD3-203ENST00000563226 USP26Q9BXU7 913 aa23.52■■□□□ 1.35
SMPD3-203ENST00000563226 KIF1BPQ96EK5 621 aa23.51■■□□□ 1.35
SMPD3-203ENST00000563226 COL16A1Q07092 1604 aaPredicted RBP23.51■■□□□ 1.35
SMPD3-203ENST00000563226 AHDC1Q5TGY3 1603 aaPredicted RBP23.51■■□□□ 1.35
SMPD3-203ENST00000563226 COL14A1Q05707 1796 aaKnown RBP23.5■■□□□ 1.35
SMPD3-203ENST00000563226 CASC1Q6TDU7 716 aa23.5■■□□□ 1.35
SMPD3-203ENST00000563226 ANKRD13DQ6ZTN6 518 aa23.5■■□□□ 1.35
SMPD3-203ENST00000563226 BICC1Q9H694 974 aaKnown RBP23.5■■□□□ 1.35
SMPD3-203ENST00000563226 PA2G4Q9UQ80 394 aaKnown RBP23.5■■□□□ 1.35
SMPD3-203ENST00000563226 UNC5CLQ8IV45 518 aa23.5■■□□□ 1.35
SMPD3-203ENST00000563226 SNX21Q969T3 373 aa23.5■■□□□ 1.35
SMPD3-203ENST00000563226 CD2BP2O95400 341 aaKnown RBP23.49■■□□□ 1.35
SMPD3-203ENST00000563226 NEXNQ0ZGT2 675 aa23.49■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 80 ms