RNA–Protein interactions for RNA: ENST00000560519.1

HERC1-209, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase family member 1, humanhuman

TSL 3

Gene HERC1, Length 591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC1-209ENST00000560519 SOS1Q07889 1333 aaPredicted RBP13.1□□□□□ -0.31
HERC1-209ENST00000560519 POLRMTO00411 1230 aaKnown RBP13.09□□□□□ -0.31
HERC1-209ENST00000560519 HSPA5P11021 654 aaKnown RBP13.09□□□□□ -0.31
HERC1-209ENST00000560519 COL11A2P13942 1736 aaPredicted RBP13.09□□□□□ -0.31
HERC1-209ENST00000560519 DDR1Q08345 913 aa13.09□□□□□ -0.31
HERC1-209ENST00000560519 SLC52A2Q9HAB3 445 aa13.09□□□□□ -0.31
HERC1-209ENST00000560519 SRP68Q9UHB9 627 aaKnown RBP13.09□□□□□ -0.31
HERC1-209ENST00000560519 ANKRD31Q8N7Z5 1873 aa13.08□□□□□ -0.32
HERC1-209ENST00000560519 PCGF6Q9BYE7 350 aa13.08□□□□□ -0.32
HERC1-209ENST00000560519 IL13P35225 146 aa13.07□□□□□ -0.32
HERC1-209ENST00000560519 USPL1Q5W0Q7 1092 aa13.07□□□□□ -0.32
HERC1-209ENST00000560519 INTS5Q6P9B9 1019 aaKnown RBP13.07□□□□□ -0.32
HERC1-209ENST00000560519 VSIG10Q8N0Z9 540 aa13.07□□□□□ -0.32
HERC1-209ENST00000560519 FER1L6Q2WGJ9 1857 aa13.06□□□□□ -0.32
HERC1-209ENST00000560519 TM4SF1P30408 202 aa13.06□□□□□ -0.32
HERC1-209ENST00000560519 SMC1BQ8NDV3 1235 aa13.06□□□□□ -0.32
HERC1-209ENST00000560519 NARFQ9UHQ1 456 aa13.06□□□□□ -0.32
HERC1-209ENST00000560519 CHRNA5P30532 468 aa13.05□□□□□ -0.32
HERC1-209ENST00000560519 DNAJC10Q8IXB1 793 aa13.05□□□□□ -0.32
HERC1-209ENST00000560519 DNAJC5GQ8N7S2 189 aa13.05□□□□□ -0.32
HERC1-209ENST00000560519 KLRG1Q96E93 195 aa13.05□□□□□ -0.32
HERC1-209ENST00000560519 CYP19A1P11511 503 aaPredicted RBP13.04□□□□□ -0.32
HERC1-209ENST00000560519 LMNB1P20700 586 aa13.04□□□□□ -0.32
HERC1-209ENST00000560519 TTC5Q8N0Z6 440 aa13.04□□□□□ -0.32
HERC1-209ENST00000560519 PDZRN3Q9UPQ7 1066 aa13.04□□□□□ -0.32
HERC1-209ENST00000560519 RNMTO43148 476 aaKnown RBP13.03□□□□□ -0.32
HERC1-209ENST00000560519 NFIXQ14938 502 aa13.03□□□□□ -0.32
HERC1-209ENST00000560519 JMYQ8N9B5 988 aa13.03□□□□□ -0.32
HERC1-209ENST00000560519 ZBTB1Q9Y2K1 713 aa13.03□□□□□ -0.32
HERC1-209ENST00000560519 LAMB4A4D0S4 1761 aa13.02□□□□□ -0.32
HERC1-209ENST00000560519 A0A087WZG4 1122 aa13.02□□□□□ -0.33
HERC1-209ENST00000560519 STARD3NLO95772 234 aa13.02□□□□□ -0.33
HERC1-209ENST00000560519 AMER1Q5JTC6 1135 aaPredicted RBP13.02□□□□□ -0.33
HERC1-209ENST00000560519 TTLL6Q8N841 843 aa13.02□□□□□ -0.33
HERC1-209ENST00000560519 RRAGCQ9HB90 399 aa13.02□□□□□ -0.33
HERC1-209ENST00000560519 CARMIL3Q8ND23 1372 aa13.02□□□□□ -0.33
HERC1-209ENST00000560519 COL3A1P02461 1466 aaPredicted RBP13.02□□□□□ -0.33
HERC1-209ENST00000560519 H0YIN7 160 aa13.01□□□□□ -0.33
HERC1-209ENST00000560519 DIAPH1O60610 1272 aaKnown RBP13.01□□□□□ -0.33
HERC1-209ENST00000560519 SERPINB2P05120 415 aa13.01□□□□□ -0.33
HERC1-209ENST00000560519 HMOX1P09601 288 aa13.01□□□□□ -0.33
HERC1-209ENST00000560519 RASSF7Q02833 373 aa13.01□□□□□ -0.33
HERC1-209ENST00000560519 GLTPD2A6NH11 291 aa13□□□□□ -0.33
HERC1-209ENST00000560519 VEGFAP15692 232 aaPredicted RBP13□□□□□ -0.33
HERC1-209ENST00000560519 SLC39A6Q13433 755 aa13□□□□□ -0.33
HERC1-209ENST00000560519 NPM2Q86SE8 214 aaKnown RBP13□□□□□ -0.33
HERC1-209ENST00000560519 LGR6Q9HBX8 967 aa13□□□□□ -0.33
HERC1-209ENST00000560519 HEG1Q9ULI3 1381 aa12.99□□□□□ -0.33
HERC1-209ENST00000560519 PDE6BP35913 854 aa12.99□□□□□ -0.33
HERC1-209ENST00000560519 TEFQ10587 303 aa12.99□□□□□ -0.33
HERC1-209ENST00000560519 MTHFSDQ2M296 383 aaKnown RBP12.99□□□□□ -0.33
HERC1-209ENST00000560519 C2CD5Q86YS7 1000 aa12.99□□□□□ -0.33
HERC1-209ENST00000560519 GAS2L2Q8NHY3 880 aa12.99□□□□□ -0.33
HERC1-209ENST00000560519 TEX13AQ9BXU3 409 aaPredicted RBP12.99□□□□□ -0.33
HERC1-209ENST00000560519 SCN4AP35499 1836 aa12.99□□□□□ -0.33
HERC1-209ENST00000560519 NPC1L1Q9UHC9 1359 aa12.98□□□□□ -0.33
HERC1-209ENST00000560519 KIF7Q2M1P5 1343 aa12.98□□□□□ -0.33
HERC1-209ENST00000560519 CANXP27824 592 aaKnown RBP12.98□□□□□ -0.33
HERC1-209ENST00000560519 DPY19L2Q6NUT2 758 aa12.98□□□□□ -0.33
HERC1-209ENST00000560519 NPHP1O15259 732 aa12.97□□□□□ -0.33
HERC1-209ENST00000560519 EIF5P55010 431 aaKnown RBP12.97□□□□□ -0.33
HERC1-209ENST00000560519 BCL2L12Q9HB09 334 aa12.97□□□□□ -0.33
HERC1-209ENST00000560519 LTBP3Q9NS15 1303 aa12.96□□□□□ -0.33
HERC1-209ENST00000560519 GNAT3A8MTJ3 354 aa12.96□□□□□ -0.33
HERC1-209ENST00000560519 NFKBIEO00221 500 aa12.96□□□□□ -0.33
HERC1-209ENST00000560519 IL6STP40189 918 aaPredicted RBP12.96□□□□□ -0.33
HERC1-209ENST00000560519 HTRA3P83110 453 aa12.96□□□□□ -0.33
HERC1-209ENST00000560519 SOGA3Q5TF21 947 aa12.96□□□□□ -0.33
HERC1-209ENST00000560519 ZNF790Q6PG37 636 aa12.96□□□□□ -0.33
HERC1-209ENST00000560519 CCER1Q8TC90 406 aaPredicted RBP12.96□□□□□ -0.33
HERC1-209ENST00000560519 BRIP1Q9BX63 1249 aa12.96□□□□□ -0.33
HERC1-209ENST00000560519 ST5P78524 1137 aa12.95□□□□□ -0.34
HERC1-209ENST00000560519 BICDL1Q6ZP65 573 aa12.95□□□□□ -0.34
HERC1-209ENST00000560519 FMNL2Q96PY5 1086 aa12.95□□□□□ -0.34
HERC1-209ENST00000560519 SLX4Q8IY92 1834 aa12.95□□□□□ -0.34
HERC1-209ENST00000560519 CEMIPQ8WUJ3 1361 aa12.94□□□□□ -0.34
HERC1-209ENST00000560519 CC2D1BQ5T0F9 858 aaKnown RBP12.94□□□□□ -0.34
HERC1-209ENST00000560519 TBC1D9BQ66K14 1250 aa12.94□□□□□ -0.34
HERC1-209ENST00000560519 CNBD1Q8NA66 436 aa12.94□□□□□ -0.34
HERC1-209ENST00000560519 ZNF622Q969S3 477 aaKnown RBP eCLIP12.94□□□□□ -0.34
HERC1-209ENST00000560519 TAOK3Q9H2K8 898 aa12.94□□□□□ -0.34
HERC1-209ENST00000560519 ZNF330Q9Y3S2 320 aaPredicted RBP12.94□□□□□ -0.34
HERC1-209ENST00000560519 U2SURPO15042 1029 aaKnown RBP12.93□□□□□ -0.34
HERC1-209ENST00000560519 ERFEQ4G0M1 354 aa12.93□□□□□ -0.34
HERC1-209ENST00000560519 PRR5LQ6MZQ0 368 aa12.93□□□□□ -0.34
HERC1-209ENST00000560519 TNS4Q8IZW8 715 aa12.93□□□□□ -0.34
HERC1-209ENST00000560519 CNKSR1Q969H4 720 aa12.93□□□□□ -0.34
HERC1-209ENST00000560519 ZNF496Q96IT1 587 aaPredicted RBP12.93□□□□□ -0.34
HERC1-209ENST00000560519 ZNF652Q9Y2D9 606 aa12.93□□□□□ -0.34
HERC1-209ENST00000560519 C21orf2O43822 256 aa12.92□□□□□ -0.34
HERC1-209ENST00000560519 PRELPP51888 382 aa12.92□□□□□ -0.34
HERC1-209ENST00000560519 STYK1Q6J9G0 422 aa12.92□□□□□ -0.34
HERC1-209ENST00000560519 SETDB2Q96T68 719 aa12.92□□□□□ -0.34
HERC1-209ENST00000560519 KDM3BQ7LBC6 1761 aa12.92□□□□□ -0.34
HERC1-209ENST00000560519 IQCA1LA6NCM1 817 aa12.91□□□□□ -0.34
HERC1-209ENST00000560519 PER1O15534 1290 aaPredicted RBP12.91□□□□□ -0.34
HERC1-209ENST00000560519 HSPA1AP0DMV8 641 aaKnown RBP12.91□□□□□ -0.34
HERC1-209ENST00000560519 HSPA1BP0DMV9 641 aaKnown RBP12.91□□□□□ -0.34
HERC1-209ENST00000560519 COL13A1Q5TAT6 717 aaPredicted RBP12.91□□□□□ -0.34
HERC1-209ENST00000560519 CFAP53Q96M91 514 aa12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms