RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 CAMTA1Q9Y6Y1 1673 aa8.97□□□□□ -0.97
VPS13C-206ENST00000558338 GSPT1P15170 499 aaKnown RBP8.97□□□□□ -0.97
VPS13C-206ENST00000558338 FLIIQ13045 1269 aa8.97□□□□□ -0.97
VPS13C-206ENST00000558338 CEMIPQ8WUJ3 1361 aa8.97□□□□□ -0.97
VPS13C-206ENST00000558338 FKBP5Q13451 457 aaPredicted RBP8.96□□□□□ -0.97
VPS13C-206ENST00000558338 RABEP1Q15276 862 aa8.96□□□□□ -0.97
VPS13C-206ENST00000558338 L1TD1Q5T7N2 865 aaKnown RBP8.96□□□□□ -0.97
VPS13C-206ENST00000558338 SLC4A10Q6U841 1118 aa8.96□□□□□ -0.97
VPS13C-206ENST00000558338 OSBPL3Q9H4L5 887 aa8.96□□□□□ -0.97
VPS13C-206ENST00000558338 MIS18AQ9NYP9 233 aa8.96□□□□□ -0.97
VPS13C-206ENST00000558338 K7ELQ4 463 aaPredicted RBP8.96□□□□□ -0.98
VPS13C-206ENST00000558338 REC8O95072 547 aa8.96□□□□□ -0.98
VPS13C-206ENST00000558338 MCM4P33991 863 aa8.96□□□□□ -0.98
VPS13C-206ENST00000558338 PSME1Q06323 249 aa8.96□□□□□ -0.98
VPS13C-206ENST00000558338 HSP90AA1P07900 732 aaKnown RBP8.95□□□□□ -0.98
VPS13C-206ENST00000558338 MNX1P50219 401 aaPredicted RBP8.95□□□□□ -0.98
VPS13C-206ENST00000558338 AMOTQ4VCS5 1084 aa8.95□□□□□ -0.98
VPS13C-206ENST00000558338 NUTM2GQ5VZR2 741 aa8.95□□□□□ -0.98
VPS13C-206ENST00000558338 G2E3Q7L622 706 aa8.95□□□□□ -0.98
VPS13C-206ENST00000558338 GBP4Q96PP9 640 aa8.95□□□□□ -0.98
VPS13C-206ENST00000558338 TRPM3Q9HCF6 1732 aaPredicted RBP8.95□□□□□ -0.98
VPS13C-206ENST00000558338 MST1RQ04912 1400 aa8.94□□□□□ -0.98
VPS13C-206ENST00000558338 DDIT3P35638 169 aa8.94□□□□□ -0.98
VPS13C-206ENST00000558338 ESCO1Q5FWF5 840 aa8.94□□□□□ -0.98
VPS13C-206ENST00000558338 HDGFL1Q5TGJ6 251 aa8.94□□□□□ -0.98
VPS13C-206ENST00000558338 IL17REQ8NFR9 667 aa8.94□□□□□ -0.98
VPS13C-206ENST00000558338 LTV1Q96GA3 475 aaPredicted RBP8.94□□□□□ -0.98
VPS13C-206ENST00000558338 KIF2CQ99661 725 aa8.94□□□□□ -0.98
VPS13C-206ENST00000558338 SRCIN1Q9C0H9 1055 aa8.94□□□□□ -0.98
VPS13C-206ENST00000558338 TUBGCP6Q96RT7 1819 aa8.94□□□□□ -0.98
VPS13C-206ENST00000558338 AOX1Q06278 1338 aa8.94□□□□□ -0.98
VPS13C-206ENST00000558338 F6X3S4 739 aa8.94□□□□□ -0.98
VPS13C-206ENST00000558338 CDK11BP21127 795 aaKnown RBP8.94□□□□□ -0.98
VPS13C-206ENST00000558338 PLEKHO1Q53GL0 409 aaPredicted RBP8.94□□□□□ -0.98
VPS13C-206ENST00000558338 AKAP4Q5JQC9 854 aa8.94□□□□□ -0.98
VPS13C-206ENST00000558338 IL27Q8NEV9 243 aa8.94□□□□□ -0.98
VPS13C-206ENST00000558338 LRRCC1Q9C099 1032 aa8.94□□□□□ -0.98
VPS13C-206ENST00000558338 PLEKHG2Q9H7P9 1386 aa8.93□□□□□ -0.98
VPS13C-206ENST00000558338 IBTKQ9P2D0 1353 aaPredicted RBP8.93□□□□□ -0.98
VPS13C-206ENST00000558338 SDSP20132 328 aa8.93□□□□□ -0.98
VPS13C-206ENST00000558338 ATP8B2P98198 1209 aa8.93□□□□□ -0.98
VPS13C-206ENST00000558338 ABCC6O95255 1503 aa8.93□□□□□ -0.98
VPS13C-206ENST00000558338 ERC2O15083 957 aa8.92□□□□□ -0.98
VPS13C-206ENST00000558338 RAB11FIP3O75154 756 aa8.92□□□□□ -0.98
VPS13C-206ENST00000558338 UBTFL1P0CB47 393 aaPredicted RBP8.92□□□□□ -0.98
VPS13C-206ENST00000558338 PDE1AP54750 535 aa8.92□□□□□ -0.98
VPS13C-206ENST00000558338 ISY1Q9ULR0 285 aaKnown RBP8.92□□□□□ -0.98
VPS13C-206ENST00000558338 HDAC5Q9UQL6 1122 aa8.92□□□□□ -0.98
VPS13C-206ENST00000558338 RGPD2P0DJD1 1756 aa8.92□□□□□ -0.98
VPS13C-206ENST00000558338 EPB41L2O43491 1005 aaKnown RBP8.91□□□□□ -0.98
VPS13C-206ENST00000558338 ST18O60284 1047 aa8.91□□□□□ -0.98
VPS13C-206ENST00000558338 MCCP23508 829 aa8.91□□□□□ -0.98
VPS13C-206ENST00000558338 ATN1P54259 1190 aaPredicted RBP8.91□□□□□ -0.98
VPS13C-206ENST00000558338 TEFQ10587 303 aa8.91□□□□□ -0.98
VPS13C-206ENST00000558338 RAB3GAP1Q15042 981 aa8.91□□□□□ -0.98
VPS13C-206ENST00000558338 C1orf141Q5JVX7 400 aa8.91□□□□□ -0.98
VPS13C-206ENST00000558338 CDAN1Q8IWY9 1227 aa8.91□□□□□ -0.98
VPS13C-206ENST00000558338 HS6ST3Q8IZP7 471 aa8.91□□□□□ -0.98
VPS13C-206ENST00000558338 USP26Q9BXU7 913 aa8.91□□□□□ -0.98
VPS13C-206ENST00000558338 ADAMTS7Q9UKP4 1686 aa8.91□□□□□ -0.98
VPS13C-206ENST00000558338 SMARCA5O60264 1052 aaPredicted RBP8.91□□□□□ -0.98
VPS13C-206ENST00000558338 EIF4A1P60842 406 aaKnown RBP8.91□□□□□ -0.98
VPS13C-206ENST00000558338 SKOR2Q2VWA4 1001 aaPredicted RBP8.91□□□□□ -0.98
VPS13C-206ENST00000558338 NBPF6Q5VWK0 638 aa8.91□□□□□ -0.98
VPS13C-206ENST00000558338 ZNF530Q6P9A1 599 aaPredicted RBP8.91□□□□□ -0.98
VPS13C-206ENST00000558338 C16orf71Q8IYS4 520 aaPredicted RBP8.91□□□□□ -0.98
VPS13C-206ENST00000558338 USHBP1Q8N6Y0 703 aa8.91□□□□□ -0.98
VPS13C-206ENST00000558338 NBPF4Q96M43 638 aa8.91□□□□□ -0.98
VPS13C-206ENST00000558338 SALL3Q9BXA9 1300 aa8.91□□□□□ -0.98
VPS13C-206ENST00000558338 SIPA1L3O60292 1781 aaPredicted RBP8.9□□□□□ -0.98
VPS13C-206ENST00000558338 ALS2Q96Q42 1657 aa8.9□□□□□ -0.98
VPS13C-206ENST00000558338 GOLGA6L22H0YM25 854 aa8.9□□□□□ -0.98
VPS13C-206ENST00000558338 APBB1O00213 710 aa8.9□□□□□ -0.98
VPS13C-206ENST00000558338 MX1P20591 662 aa8.9□□□□□ -0.98
VPS13C-206ENST00000558338 DCCP43146 1447 aa8.9□□□□□ -0.98
VPS13C-206ENST00000558338 HSP90AB4PQ58FF6 505 aa8.9□□□□□ -0.98
VPS13C-206ENST00000558338 ARHGEF25Q86VW2 580 aa8.9□□□□□ -0.98
VPS13C-206ENST00000558338 OTUD7AQ8TE49 926 aaPredicted RBP8.9□□□□□ -0.98
VPS13C-206ENST00000558338 STAP2Q9UGK3 403 aa8.9□□□□□ -0.98
VPS13C-206ENST00000558338 BTBD11A6QL63 1104 aa8.89□□□□□ -0.99
VPS13C-206ENST00000558338 TRAK2O60296 914 aa8.89□□□□□ -0.99
VPS13C-206ENST00000558338 GCP02774 474 aa8.89□□□□□ -0.99
VPS13C-206ENST00000558338 MCM2P49736 904 aa8.89□□□□□ -0.99
VPS13C-206ENST00000558338 NUCB2P80303 420 aa8.89□□□□□ -0.99
VPS13C-206ENST00000558338 SSH3Q8TE77 659 aa8.89□□□□□ -0.99
VPS13C-206ENST00000558338 CWC22Q9HCG8 908 aaKnown RBP8.89□□□□□ -0.99
VPS13C-206ENST00000558338 LRRFIP2Q9Y608 721 aaKnown RBP8.89□□□□□ -0.99
VPS13C-206ENST00000558338 CLEC17AQ6ZS10 378 aa8.89□□□□□ -0.99
VPS13C-206ENST00000558338 TNPO1Q92973 898 aaKnown RBP8.89□□□□□ -0.99
VPS13C-206ENST00000558338 EXOC6BQ9Y2D4 811 aa8.89□□□□□ -0.99
VPS13C-206ENST00000558338 C1orf167Q5SNV9 1468 aa8.89□□□□□ -0.99
VPS13C-206ENST00000558338 POTEFA5A3E0 1075 aa8.88□□□□□ -0.99
VPS13C-206ENST00000558338 GOLGA6L3A6NEY3 463 aa8.88□□□□□ -0.99
VPS13C-206ENST00000558338 RNMTO43148 476 aaKnown RBP8.88□□□□□ -0.99
VPS13C-206ENST00000558338 HSP90B1P14625 803 aaKnown RBP8.88□□□□□ -0.99
VPS13C-206ENST00000558338 ANAPC15P60006 121 aa8.88□□□□□ -0.99
VPS13C-206ENST00000558338 ANKRD24Q8TF21 1146 aa8.88□□□□□ -0.99
VPS13C-206ENST00000558338 DNAAF4Q8WXU2 420 aa8.88□□□□□ -0.99
VPS13C-206ENST00000558338 USP44Q9H0E7 712 aa8.88□□□□□ -0.99
VPS13C-206ENST00000558338 DBF4Q9UBU7 674 aaPredicted RBP8.88□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 99.7 ms