RNA–Protein interactions for RNA: ENST00000557060.1

SYNE2-225, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 3,203 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-225ENST00000557060 GNAI3P08754 354 aa7.35□□□□□ -1.23
SYNE2-225ENST00000557060 PPP1R42Q7Z4L9 355 aa7.35□□□□□ -1.23
SYNE2-225ENST00000557060 TBC1D32Q96NH3 1257 aa7.35□□□□□ -1.23
SYNE2-225ENST00000557060 SIL1Q9H173 461 aa7.35□□□□□ -1.23
SYNE2-225ENST00000557060 BTG4Q9NY30 223 aa7.35□□□□□ -1.23
SYNE2-225ENST00000557060 LMTK3Q96Q04 1460 aa7.34□□□□□ -1.23
SYNE2-225ENST00000557060 GOLGB1Q14789 3259 aaKnown RBP7.34□□□□□ -1.23
SYNE2-225ENST00000557060 RBM42Q9BTD8 480 aaKnown RBP7.34□□□□□ -1.23
SYNE2-225ENST00000557060 SLC52A2Q9HAB3 445 aa7.34□□□□□ -1.23
SYNE2-225ENST00000557060 MEGF6O75095 1541 aa7.34□□□□□ -1.23
SYNE2-225ENST00000557060 MED1Q15648 1581 aaPredicted RBP7.34□□□□□ -1.23
SYNE2-225ENST00000557060 COPS6Q7L5N1 327 aa7.34□□□□□ -1.23
SYNE2-225ENST00000557060 ATP10DQ9P241 1426 aa7.34□□□□□ -1.23
SYNE2-225ENST00000557060 RGPD5Q99666 1765 aa7.34□□□□□ -1.24
SYNE2-225ENST00000557060 BMP2KLQ5H9B9 411 aa7.33□□□□□ -1.24
SYNE2-225ENST00000557060 KLHDC4Q8TBB5 520 aa7.33□□□□□ -1.24
SYNE2-225ENST00000557060 XAGE3Q8WTP9 111 aa7.33□□□□□ -1.24
SYNE2-225ENST00000557060 PA2G4Q9UQ80 394 aaKnown RBP7.33□□□□□ -1.24
SYNE2-225ENST00000557060 HSP90AA1P07900 732 aaKnown RBP7.33□□□□□ -1.24
SYNE2-225ENST00000557060 BECN1Q14457 450 aa7.33□□□□□ -1.24
SYNE2-225ENST00000557060 TBC1D2Q9BYX2 928 aa7.33□□□□□ -1.24
SYNE2-225ENST00000557060 LRRCC1Q9C099 1032 aa7.33□□□□□ -1.24
SYNE2-225ENST00000557060 SDSP20132 328 aa7.33□□□□□ -1.24
SYNE2-225ENST00000557060 ZCRB1Q8TBF4 217 aaKnown RBP7.33□□□□□ -1.24
SYNE2-225ENST00000557060 CHMP3Q9Y3E7 222 aa7.33□□□□□ -1.24
SYNE2-225ENST00000557060 BEND3Q5T5X7 828 aa7.32□□□□□ -1.24
SYNE2-225ENST00000557060 MYD88Q99836 296 aa7.32□□□□□ -1.24
SYNE2-225ENST00000557060 DCAF5Q96JK2 942 aa7.32□□□□□ -1.24
SYNE2-225ENST00000557060 FRAT2O75474 233 aaPredicted RBP7.31□□□□□ -1.24
SYNE2-225ENST00000557060 A1BGP04217 495 aa7.31□□□□□ -1.24
SYNE2-225ENST00000557060 MYT1Q01538 1121 aa7.31□□□□□ -1.24
SYNE2-225ENST00000557060 TTC22Q5TAA0 569 aa7.31□□□□□ -1.24
SYNE2-225ENST00000557060 NOL8Q76FK4 1167 aaKnown RBP7.31□□□□□ -1.24
SYNE2-225ENST00000557060 CCDC85AQ96PX6 553 aaPredicted RBP7.31□□□□□ -1.24
SYNE2-225ENST00000557060 ZBTB3Q9H5J0 574 aa7.31□□□□□ -1.24
SYNE2-225ENST00000557060 ADCY9O60503 1353 aa7.31□□□□□ -1.24
SYNE2-225ENST00000557060 SOS1Q07889 1333 aaPredicted RBP7.31□□□□□ -1.24
SYNE2-225ENST00000557060 CDC45O75419 566 aa7.31□□□□□ -1.24
SYNE2-225ENST00000557060 IL2RBP14784 551 aa7.31□□□□□ -1.24
SYNE2-225ENST00000557060 ATP8B2P98198 1209 aa7.31□□□□□ -1.24
SYNE2-225ENST00000557060 KDM6AO15550 1401 aaPredicted RBP7.31□□□□□ -1.24
SYNE2-225ENST00000557060 WDR17Q8IZU2 1322 aa7.31□□□□□ -1.24
SYNE2-225ENST00000557060 DDX58O95786 925 aaKnown RBP7.31□□□□□ -1.24
SYNE2-225ENST00000557060 PDE1AP54750 535 aa7.31□□□□□ -1.24
SYNE2-225ENST00000557060 NFKBIBQ15653 356 aa7.31□□□□□ -1.24
SYNE2-225ENST00000557060 KSR2Q6VAB6 950 aa7.31□□□□□ -1.24
SYNE2-225ENST00000557060 SLIT3O75094 1523 aa7.3□□□□□ -1.24
SYNE2-225ENST00000557060 MX1P20591 662 aa7.3□□□□□ -1.24
SYNE2-225ENST00000557060 NEXNQ0ZGT2 675 aa7.3□□□□□ -1.24
SYNE2-225ENST00000557060 FMNL2Q96PY5 1086 aa7.3□□□□□ -1.24
SYNE2-225ENST00000557060 DDX21Q9NR30 783 aaKnown RBP eCLIP7.3□□□□□ -1.24
SYNE2-225ENST00000557060 BABAM1Q9NWV8 329 aa7.3□□□□□ -1.24
SYNE2-225ENST00000557060 SOS2Q07890 1332 aaPredicted RBP7.3□□□□□ -1.24
SYNE2-225ENST00000557060 SNRPA1P09661 255 aaKnown RBP7.3□□□□□ -1.24
SYNE2-225ENST00000557060 UBE3BQ7Z3V4 1068 aa7.3□□□□□ -1.24
SYNE2-225ENST00000557060 UNC5CLQ8IV45 518 aa7.3□□□□□ -1.24
SYNE2-225ENST00000557060 HSCBQ8IWL3 235 aa7.3□□□□□ -1.24
SYNE2-225ENST00000557060 HYPKQ9NX55 129 aa7.3□□□□□ -1.24
SYNE2-225ENST00000557060 CD2BP2O95400 341 aaKnown RBP7.29□□□□□ -1.24
SYNE2-225ENST00000557060 PDIA6Q15084 440 aa7.29□□□□□ -1.24
SYNE2-225ENST00000557060 ANKRD13DQ6ZTN6 518 aa7.29□□□□□ -1.24
SYNE2-225ENST00000557060 BICC1Q9H694 974 aaKnown RBP7.29□□□□□ -1.24
SYNE2-225ENST00000557060 ASAP1Q9ULH1 1129 aa7.29□□□□□ -1.24
SYNE2-225ENST00000557060 TRPM3Q9HCF6 1732 aaPredicted RBP7.29□□□□□ -1.24
SYNE2-225ENST00000557060 DCCP43146 1447 aa7.29□□□□□ -1.24
SYNE2-225ENST00000557060 HSP90AB1P08238 724 aaKnown RBP7.29□□□□□ -1.24
SYNE2-225ENST00000557060 CASC1Q6TDU7 716 aa7.29□□□□□ -1.24
SYNE2-225ENST00000557060 SUCLG2Q96I99 432 aa7.29□□□□□ -1.24
SYNE2-225ENST00000557060 ANO2Q9NQ90 1003 aa7.29□□□□□ -1.24
SYNE2-225ENST00000557060 GRM8O00222 908 aa7.29□□□□□ -1.24
SYNE2-225ENST00000557060 IGKV5-2P06315 115 aa7.29□□□□□ -1.24
SYNE2-225ENST00000557060 DEKP35659 375 aaKnown RBP7.29□□□□□ -1.24
SYNE2-225ENST00000557060 TTLL7Q6ZT98 887 aa7.29□□□□□ -1.24
SYNE2-225ENST00000557060 RHPN1Q8TCX5 695 aa7.29□□□□□ -1.24
SYNE2-225ENST00000557060 ACSBG1Q96GR2 724 aa7.29□□□□□ -1.24
SYNE2-225ENST00000557060 CAMTA1Q9Y6Y1 1673 aa7.29□□□□□ -1.24
SYNE2-225ENST00000557060 HOXB7P09629 217 aa7.28□□□□□ -1.24
SYNE2-225ENST00000557060 CCDC8Q9H0W5 538 aaPredicted RBP7.28□□□□□ -1.24
SYNE2-225ENST00000557060 TMOD3Q9NYL9 352 aa7.28□□□□□ -1.24
SYNE2-225ENST00000557060 PCDH11XQ9BZA7 1347 aa7.28□□□□□ -1.24
SYNE2-225ENST00000557060 PCDH11YQ9BZA8 1340 aa7.28□□□□□ -1.24
SYNE2-225ENST00000557060 A0A087WZG4 1122 aa7.28□□□□□ -1.24
SYNE2-225ENST00000557060 FAM177BA6PVY3 158 aa7.28□□□□□ -1.24
SYNE2-225ENST00000557060 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP7.28□□□□□ -1.24
SYNE2-225ENST00000557060 KIF1AQ12756 1690 aa7.28□□□□□ -1.24
SYNE2-225ENST00000557060 DTNBO60941 627 aa7.27□□□□□ -1.24
SYNE2-225ENST00000557060 EPHA10Q5JZY3 1008 aa7.27□□□□□ -1.24
SYNE2-225ENST00000557060 LINS1Q8NG48 757 aa7.27□□□□□ -1.24
SYNE2-225ENST00000557060 NDUFB9Q9Y6M9 179 aa7.27□□□□□ -1.24
SYNE2-225ENST00000557060 STRCQ7RTU9 1775 aa7.27□□□□□ -1.25
SYNE2-225ENST00000557060 AACSQ86V21 672 aa7.27□□□□□ -1.25
SYNE2-225ENST00000557060 EP400Q96L91 3159 aa7.27□□□□□ -1.25
SYNE2-225ENST00000557060 NBPF26B4DH59 902 aa7.27□□□□□ -1.25
SYNE2-225ENST00000557060 IFIT2P09913 472 aaKnown RBP7.27□□□□□ -1.25
SYNE2-225ENST00000557060 NBPF14Q5TI25 921 aa7.27□□□□□ -1.25
SYNE2-225ENST00000557060 NBPF10Q6P3W6 841 aaKnown RBP7.27□□□□□ -1.25
SYNE2-225ENST00000557060 NBPF15Q8N660 670 aa7.27□□□□□ -1.25
SYNE2-225ENST00000557060 SSH3Q8TE77 659 aa7.27□□□□□ -1.25
SYNE2-225ENST00000557060 CHMP4AQ9BY43 222 aa7.27□□□□□ -1.25
SYNE2-225ENST00000557060 ALS2Q96Q42 1657 aa7.26□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms