RNA–Protein interactions for RNA: ENST00000555612.5

SYNE2-220, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 6,766 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-220ENST00000555612 KRT85P78386 507 aa9.65□□□□□ -0.86
SYNE2-220ENST00000555612 TRMT1LQ7Z2T5 733 aaKnown RBP9.65□□□□□ -0.86
SYNE2-220ENST00000555612 SSH1Q8WYL5 1049 aa9.65□□□□□ -0.86
SYNE2-220ENST00000555612 DACH1Q9UI36 760 aa9.65□□□□□ -0.86
SYNE2-220ENST00000555612 F8W031 263 aaPredicted RBP9.65□□□□□ -0.87
SYNE2-220ENST00000555612 UHRF1BP1LA0JNW5 1464 aa9.65□□□□□ -0.87
SYNE2-220ENST00000555612 FAM83GA6ND36 823 aa9.64□□□□□ -0.87
SYNE2-220ENST00000555612 NEBLO76041 1014 aa9.64□□□□□ -0.87
SYNE2-220ENST00000555612 LDHCP07864 332 aa9.64□□□□□ -0.87
SYNE2-220ENST00000555612 SLFN5Q08AF3 891 aa9.64□□□□□ -0.87
SYNE2-220ENST00000555612 FLIIQ13045 1269 aa9.64□□□□□ -0.87
SYNE2-220ENST00000555612 IQCA1Q86XH1 822 aa9.64□□□□□ -0.87
SYNE2-220ENST00000555612 RPRD2Q5VT52 1461 aaKnown RBP9.64□□□□□ -0.87
SYNE2-220ENST00000555612 ZSCAN31Q96LW9 406 aaPredicted RBP9.64□□□□□ -0.87
SYNE2-220ENST00000555612 WDR33Q9C0J8 1336 aaKnown RBP9.64□□□□□ -0.87
SYNE2-220ENST00000555612 C16orf71Q8IYS4 520 aaPredicted RBP9.64□□□□□ -0.87
SYNE2-220ENST00000555612 CEP57L1Q8IYX8 460 aa9.64□□□□□ -0.87
SYNE2-220ENST00000555612 CCDC184Q52MB2 194 aa9.64□□□□□ -0.87
SYNE2-220ENST00000555612 TNMDQ9H2S6 317 aa9.64□□□□□ -0.87
SYNE2-220ENST00000555612 LIG1P18858 919 aa9.64□□□□□ -0.87
SYNE2-220ENST00000555612 NOM1Q5C9Z4 860 aaKnown RBP9.64□□□□□ -0.87
SYNE2-220ENST00000555612 SPATA32Q96LK8 384 aa9.64□□□□□ -0.87
SYNE2-220ENST00000555612 HLA-DOAP06340 250 aa9.64□□□□□ -0.87
SYNE2-220ENST00000555612 TSPY26PQ9H489 355 aa9.64□□□□□ -0.87
SYNE2-220ENST00000555612 SLC39A6Q13433 755 aa9.63□□□□□ -0.87
SYNE2-220ENST00000555612 CCDC152Q4G0S7 254 aa9.63□□□□□ -0.87
SYNE2-220ENST00000555612 PPFIBP1Q86W92 1011 aa9.63□□□□□ -0.87
SYNE2-220ENST00000555612 SMARCC1Q92922 1105 aaPredicted RBP9.63□□□□□ -0.87
SYNE2-220ENST00000555612 PTPN23Q9H3S7 1636 aa9.63□□□□□ -0.87
SYNE2-220ENST00000555612 TARBP1Q13395 1621 aaKnown RBP9.63□□□□□ -0.87
SYNE2-220ENST00000555612 BAG3O95817 575 aa9.63□□□□□ -0.87
SYNE2-220ENST00000555612 TRIM21P19474 475 aaKnown RBP9.63□□□□□ -0.87
SYNE2-220ENST00000555612 UBA5Q9GZZ9 404 aa9.63□□□□□ -0.87
SYNE2-220ENST00000555612 MYO6Q9UM54 1294 aa9.63□□□□□ -0.87
SYNE2-220ENST00000555612 KDM5BQ9UGL1 1544 aa9.63□□□□□ -0.87
SYNE2-220ENST00000555612 ZNF213O14771 459 aa9.63□□□□□ -0.87
SYNE2-220ENST00000555612 GOLIM4O00461 696 aa9.63□□□□□ -0.87
SYNE2-220ENST00000555612 VAT1LQ9HCJ6 419 aa9.62□□□□□ -0.87
SYNE2-220ENST00000555612 SLC12A7Q9Y666 1083 aa9.62□□□□□ -0.87
SYNE2-220ENST00000555612 PARP3Q9Y6F1 533 aa9.62□□□□□ -0.87
SYNE2-220ENST00000555612 K7ELQ4 463 aaPredicted RBP9.62□□□□□ -0.87
SYNE2-220ENST00000555612 ECM2O94769 699 aaPredicted RBP9.62□□□□□ -0.87
SYNE2-220ENST00000555612 ABCC11Q96J66 1382 aa9.62□□□□□ -0.87
SYNE2-220ENST00000555612 PI4KAP2A4QPH2 592 aa9.62□□□□□ -0.87
SYNE2-220ENST00000555612 NASPP49321 788 aaPredicted RBP9.62□□□□□ -0.87
SYNE2-220ENST00000555612 SETQ01105 290 aaPredicted RBP9.62□□□□□ -0.87
SYNE2-220ENST00000555612 RBM26Q5T8P6 1007 aaKnown RBP9.62□□□□□ -0.87
SYNE2-220ENST00000555612 PI4KAP1Q8N8J0 262 aa9.62□□□□□ -0.87
SYNE2-220ENST00000555612 RNF41Q9H4P4 317 aaPredicted RBP9.62□□□□□ -0.87
SYNE2-220ENST00000555612 HDAC9Q9UKV0 1011 aa9.62□□□□□ -0.87
SYNE2-220ENST00000555612 IQSEC3Q9UPP2 1182 aaPredicted RBP9.62□□□□□ -0.87
SYNE2-220ENST00000555612 NIP7Q9Y221 180 aaKnown RBP eCLIP9.62□□□□□ -0.87
SYNE2-220ENST00000555612 IFIT3O14879 490 aaKnown RBP9.62□□□□□ -0.87
SYNE2-220ENST00000555612 DESP17661 470 aa9.62□□□□□ -0.87
SYNE2-220ENST00000555612 ALDH1L2Q3SY69 923 aa9.62□□□□□ -0.87
SYNE2-220ENST00000555612 ANKRD18AQ8IVF6 992 aa9.62□□□□□ -0.87
SYNE2-220ENST00000555612 LRRC59Q96AG4 307 aaKnown RBP9.62□□□□□ -0.87
SYNE2-220ENST00000555612 SPTY2D1Q68D10 685 aaPredicted RBP9.62□□□□□ -0.87
SYNE2-220ENST00000555612 C19orf44Q9H6X5 657 aa9.62□□□□□ -0.87
SYNE2-220ENST00000555612 ARGLU1Q9NWB6 273 aaPredicted RBP9.62□□□□□ -0.87
SYNE2-220ENST00000555612 IL2RBP14784 551 aa9.61□□□□□ -0.87
SYNE2-220ENST00000555612 SSR1P43307 286 aaKnown RBP9.61□□□□□ -0.87
SYNE2-220ENST00000555612 CEP131Q9UPN4 1083 aa9.61□□□□□ -0.87
SYNE2-220ENST00000555612 TCOF1Q13428 1488 aaKnown RBP9.61□□□□□ -0.87
SYNE2-220ENST00000555612 ANKRD13DQ6ZTN6 518 aa9.61□□□□□ -0.87
SYNE2-220ENST00000555612 SPC24Q8NBT2 197 aa9.61□□□□□ -0.87
SYNE2-220ENST00000555612 NLRP3Q96P20 1036 aa9.61□□□□□ -0.87
SYNE2-220ENST00000555612 EHMT1Q9H9B1 1298 aa9.61□□□□□ -0.87
SYNE2-220ENST00000555612 LUC7LQ9NQ29 371 aaKnown RBP9.61□□□□□ -0.87
SYNE2-220ENST00000555612 RIMS2Q9UQ26 1411 aa9.61□□□□□ -0.87
SYNE2-220ENST00000555612 CCDC196A0A1B0GTZ2 297 aa9.61□□□□□ -0.87
SYNE2-220ENST00000555612 OGFOD1Q8N543 542 aa9.61□□□□□ -0.87
SYNE2-220ENST00000555612 ACBD3Q9H3P7 528 aa9.61□□□□□ -0.87
SYNE2-220ENST00000555612 SCAF11Q99590 1463 aaKnown RBP9.61□□□□□ -0.87
SYNE2-220ENST00000555612 TRAK2O60296 914 aa9.61□□□□□ -0.87
SYNE2-220ENST00000555612 FERMT3Q86UX7 667 aa9.61□□□□□ -0.87
SYNE2-220ENST00000555612 CCDC83Q8IWF9 413 aa9.61□□□□□ -0.87
SYNE2-220ENST00000555612 CFAP45Q9UL16 551 aa9.61□□□□□ -0.87
SYNE2-220ENST00000555612 TSPY2A6NKD2 308 aa9.61□□□□□ -0.87
SYNE2-220ENST00000555612 GOLGA8AA7E2F4 631 aa9.6□□□□□ -0.87
SYNE2-220ENST00000555612 GOLGA8BA8MQT2 603 aa9.6□□□□□ -0.87
SYNE2-220ENST00000555612 RTCBQ9Y3I0 505 aaKnown RBP9.6□□□□□ -0.87
SYNE2-220ENST00000555612 PPM1FP49593 454 aaPredicted RBP9.6□□□□□ -0.87
SYNE2-220ENST00000555612 TTF1Q15361 905 aaPredicted RBP9.6□□□□□ -0.87
SYNE2-220ENST00000555612 HSP90B2PQ58FF3 399 aa9.6□□□□□ -0.87
SYNE2-220ENST00000555612 SIRT1Q96EB6 747 aa9.6□□□□□ -0.87
SYNE2-220ENST00000555612 UPF3BQ9BZI7 483 aaKnown RBP9.6□□□□□ -0.87
SYNE2-220ENST00000555612 RSPH6AQ9H0K4 717 aa9.6□□□□□ -0.87
SYNE2-220ENST00000555612 TTC21AQ8NDW8 1320 aa9.6□□□□□ -0.87
SYNE2-220ENST00000555612 CCDC194A0A1B0GVG4 234 aa9.6□□□□□ -0.87
SYNE2-220ENST00000555612 CCDC192P0DO97 292 aa9.6□□□□□ -0.87
SYNE2-220ENST00000555612 NLRP5P59047 1200 aa9.6□□□□□ -0.87
SYNE2-220ENST00000555612 NFKBIBQ15653 356 aa9.6□□□□□ -0.87
SYNE2-220ENST00000555612 CATIPQ7Z7H3 387 aa9.6□□□□□ -0.87
SYNE2-220ENST00000555612 VEZTQ9HBM0 779 aa9.6□□□□□ -0.87
SYNE2-220ENST00000555612 ADAMTS12P58397 1594 aa9.6□□□□□ -0.87
SYNE2-220ENST00000555612 PPP1R12BO60237 982 aaPredicted RBP9.6□□□□□ -0.87
SYNE2-220ENST00000555612 XAGE3Q8WTP9 111 aa9.6□□□□□ -0.87
SYNE2-220ENST00000555612 CCDC39Q9UFE4 941 aa9.6□□□□□ -0.87
SYNE2-220ENST00000555612 RARSP54136 660 aaKnown RBP9.6□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms