RNA–Protein interactions for RNA: ENST00000555259.5

SCFD1-215, Transcript of sec1 family domain containing 1, humanhuman

TSL 1 (best)

Gene SCFD1, Length 1,553 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-215ENST00000555259 PRDM10Q9NQV6 1147 aa13.38□□□□□ -0.27
SCFD1-215ENST00000555259 DLEC1Q9Y238 1755 aa13.37□□□□□ -0.27
SCFD1-215ENST00000555259 PLEKHO1Q53GL0 409 aaPredicted RBP13.37□□□□□ -0.27
SCFD1-215ENST00000555259 DPY19L2Q6NUT2 758 aa13.37□□□□□ -0.27
SCFD1-215ENST00000555259 ZNF530Q6P9A1 599 aaPredicted RBP13.37□□□□□ -0.27
SCFD1-215ENST00000555259 CCDC88AQ3V6T2 1871 aa13.37□□□□□ -0.27
SCFD1-215ENST00000555259 MTHFSP49914 203 aa13.37□□□□□ -0.27
SCFD1-215ENST00000555259 NFIXQ14938 502 aa13.37□□□□□ -0.27
SCFD1-215ENST00000555259 CHADLQ6NUI6 762 aa13.37□□□□□ -0.27
SCFD1-215ENST00000555259 NFATC2IPQ8NCF5 419 aa13.37□□□□□ -0.27
SCFD1-215ENST00000555259 AFDNP55196 1824 aaKnown RBP13.36□□□□□ -0.27
SCFD1-215ENST00000555259 NRXN2Q9P2S2 1712 aa13.36□□□□□ -0.27
SCFD1-215ENST00000555259 AMOTQ4VCS5 1084 aa13.36□□□□□ -0.27
SCFD1-215ENST00000555259 CNTNAP1P78357 1384 aa13.35□□□□□ -0.27
SCFD1-215ENST00000555259 SOS1Q07889 1333 aaPredicted RBP13.35□□□□□ -0.27
SCFD1-215ENST00000555259 C2CD5Q86YS7 1000 aa13.35□□□□□ -0.27
SCFD1-215ENST00000555259 SERPINB2P05120 415 aa13.34□□□□□ -0.27
SCFD1-215ENST00000555259 POTEIP0CG38 1075 aa13.34□□□□□ -0.27
SCFD1-215ENST00000555259 POTEJP0CG39 1038 aa13.34□□□□□ -0.27
SCFD1-215ENST00000555259 CTCFP49711 727 aaPredicted RBP13.34□□□□□ -0.27
SCFD1-215ENST00000555259 ERFEQ4G0M1 354 aa13.34□□□□□ -0.27
SCFD1-215ENST00000555259 DNAJC10Q8IXB1 793 aa13.34□□□□□ -0.27
SCFD1-215ENST00000555259 NARFQ9UHQ1 456 aa13.34□□□□□ -0.27
SCFD1-215ENST00000555259 CARMIL3Q8ND23 1372 aa13.34□□□□□ -0.27
SCFD1-215ENST00000555259 H0YIN7 160 aa13.33□□□□□ -0.28
SCFD1-215ENST00000555259 TNNT2P45379 298 aaPredicted RBP13.33□□□□□ -0.28
SCFD1-215ENST00000555259 C1orf141Q5JVX7 400 aa13.33□□□□□ -0.28
SCFD1-215ENST00000555259 AIDAQ96BJ3 306 aa13.33□□□□□ -0.28
SCFD1-215ENST00000555259 BCL2L12Q9HB09 334 aa13.33□□□□□ -0.28
SCFD1-215ENST00000555259 CYP19A1P11511 503 aaPredicted RBP13.32□□□□□ -0.28
SCFD1-215ENST00000555259 COL15A1P39059 1388 aa13.32□□□□□ -0.28
SCFD1-215ENST00000555259 PASKQ96RG2 1323 aa13.31□□□□□ -0.28
SCFD1-215ENST00000555259 DDNO94850 711 aaPredicted RBP13.31□□□□□ -0.28
SCFD1-215ENST00000555259 VEGFBP49765 207 aa13.31□□□□□ -0.28
SCFD1-215ENST00000555259 FAM161AQ3B820 660 aa13.31□□□□□ -0.28
SCFD1-215ENST00000555259 AEBP1Q8IUX7 1158 aa13.31□□□□□ -0.28
SCFD1-215ENST00000555259 DICER1Q9UPY3 1922 aaKnown RBP13.31□□□□□ -0.28
SCFD1-215ENST00000555259 C21orf2O43822 256 aa13.3□□□□□ -0.28
SCFD1-215ENST00000555259 LBX1P52954 281 aa13.3□□□□□ -0.28
SCFD1-215ENST00000555259 WBP1LQ9NX94 342 aa13.3□□□□□ -0.28
SCFD1-215ENST00000555259 ZBTB1Q9Y2K1 713 aa13.3□□□□□ -0.28
SCFD1-215ENST00000555259 FER1L6Q2WGJ9 1857 aa13.29□□□□□ -0.28
SCFD1-215ENST00000555259 ZNF622Q969S3 477 aaKnown RBP eCLIP13.29□□□□□ -0.283e-6■□□□□ 8.1
SCFD1-215ENST00000555259 ABHD8Q96I13 439 aa13.29□□□□□ -0.28
SCFD1-215ENST00000555259 ZNF219Q9P2Y4 722 aaPredicted RBP13.29□□□□□ -0.28
SCFD1-215ENST00000555259 LTBP3Q9NS15 1303 aa13.29□□□□□ -0.28
SCFD1-215ENST00000555259 LDHDQ86WU2 507 aa13.28□□□□□ -0.28
SCFD1-215ENST00000555259 TAOK3Q9H2K8 898 aa13.28□□□□□ -0.28
SCFD1-215ENST00000555259 SCN11AQ9UI33 1791 aa13.28□□□□□ -0.28
SCFD1-215ENST00000555259 IQCA1LA6NCM1 817 aa13.28□□□□□ -0.28
SCFD1-215ENST00000555259 TMEM88BA6NKF7 163 aa13.28□□□□□ -0.28
SCFD1-215ENST00000555259 BICDL1Q6ZP65 573 aa13.28□□□□□ -0.28
SCFD1-215ENST00000555259 SLC52A2Q9HAB3 445 aa13.28□□□□□ -0.28
SCFD1-215ENST00000555259 BRIP1Q9BX63 1249 aa13.27□□□□□ -0.29
SCFD1-215ENST00000555259 TAF1DQ9H5J8 278 aaPredicted RBP13.27□□□□□ -0.29
SCFD1-215ENST00000555259 PCDH10Q9P2E7 1040 aa13.27□□□□□ -0.29
SCFD1-215ENST00000555259 PDZRN3Q9UPQ7 1066 aa13.27□□□□□ -0.29
SCFD1-215ENST00000555259 ANKRD31Q8N7Z5 1873 aa13.27□□□□□ -0.29
SCFD1-215ENST00000555259 VIRMAQ69YN4 1812 aaKnown RBP13.26□□□□□ -0.29
SCFD1-215ENST00000555259 ITGBL1O95965 494 aaPredicted RBP13.26□□□□□ -0.29
SCFD1-215ENST00000555259 HSPA8P11142 646 aaKnown RBP13.26□□□□□ -0.29
SCFD1-215ENST00000555259 PDE6BP35913 854 aa13.26□□□□□ -0.29
SCFD1-215ENST00000555259 SLC39A6Q13433 755 aa13.26□□□□□ -0.29
SCFD1-215ENST00000555259 SULT6B1Q6IMI4 303 aa13.26□□□□□ -0.29
SCFD1-215ENST00000555259 L3MBTL3Q96JM7 780 aaPredicted RBP13.26□□□□□ -0.29
SCFD1-215ENST00000555259 COL11A2P13942 1736 aaPredicted RBP13.26□□□□□ -0.29
SCFD1-215ENST00000555259 AKAP4Q5JQC9 854 aa13.25□□□□□ -0.29
SCFD1-215ENST00000555259 MRC1P22897 1456 aa13.25□□□□□ -0.29
SCFD1-215ENST00000555259 SCN4AP35499 1836 aa13.25□□□□□ -0.29
SCFD1-215ENST00000555259 CANXP27824 592 aaKnown RBP13.24□□□□□ -0.29
SCFD1-215ENST00000555259 TBC1D9BQ66K14 1250 aa13.24□□□□□ -0.29
SCFD1-215ENST00000555259 PRR5LQ6MZQ0 368 aa13.24□□□□□ -0.29
SCFD1-215ENST00000555259 CCDC24Q8N4L8 307 aa13.24□□□□□ -0.29
SCFD1-215ENST00000555259 LGR6Q9HBX8 967 aa13.24□□□□□ -0.29
SCFD1-215ENST00000555259 RASSF10A6NK89 507 aa13.24□□□□□ -0.29
SCFD1-215ENST00000555259 EIF5P55010 431 aaKnown RBP13.24□□□□□ -0.29
SCFD1-215ENST00000555259 VSIG10Q8N0Z9 540 aa13.24□□□□□ -0.29
SCFD1-215ENST00000555259 MLLT1Q03111 559 aaPredicted RBP13.23□□□□□ -0.29
SCFD1-215ENST00000555259 EAPPQ56P03 285 aaPredicted RBP13.23□□□□□ -0.29
SCFD1-215ENST00000555259 SOGA3Q5TF21 947 aa13.23□□□□□ -0.29
SCFD1-215ENST00000555259 PRPF40BQ6NWY9 871 aaKnown RBP13.23□□□□□ -0.29
SCFD1-215ENST00000555259 CNKSR1Q969H4 720 aa13.23□□□□□ -0.29
SCFD1-215ENST00000555259 SLX4Q8IY92 1834 aa13.22□□□□□ -0.29
SCFD1-215ENST00000555259 MAP2K1Q02750 393 aaPredicted RBP13.22□□□□□ -0.29
SCFD1-215ENST00000555259 DEFB115Q30KQ5 88 aa13.22□□□□□ -0.29
SCFD1-215ENST00000555259 A0A087WZG4 1122 aa13.21□□□□□ -0.29
SCFD1-215ENST00000555259 CCDC85CA6NKD9 419 aa13.21□□□□□ -0.29
SCFD1-215ENST00000555259 RNMTO43148 476 aaKnown RBP13.21□□□□□ -0.29
SCFD1-215ENST00000555259 SRGNP10124 158 aa13.21□□□□□ -0.29
SCFD1-215ENST00000555259 RGS19P49795 217 aa13.21□□□□□ -0.29
SCFD1-215ENST00000555259 STYK1Q6J9G0 422 aa13.21□□□□□ -0.29
SCFD1-215ENST00000555259 WDR33Q9C0J8 1336 aaKnown RBP13.21□□□□□ -0.29
SCFD1-215ENST00000555259 ADAMTSL1Q8N6G6 1762 aa13.21□□□□□ -0.3
SCFD1-215ENST00000555259 STARD3NLO95772 234 aa13.2□□□□□ -0.3
SCFD1-215ENST00000555259 IL13P35225 146 aa13.2□□□□□ -0.3
SCFD1-215ENST00000555259 HACL1Q9UJ83 578 aa13.2□□□□□ -0.3
SCFD1-215ENST00000555259 CLEC11AQ9Y240 323 aa13.2□□□□□ -0.3
SCFD1-215ENST00000555259 SCN7AQ01118 1682 aa13.2□□□□□ -0.3
SCFD1-215ENST00000555259 ZNF541Q9H0D2 1346 aa13.2□□□□□ -0.3
SCFD1-215ENST00000555259 EPHX2P34913 555 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 303.2 ms