RNA–Protein interactions for RNA: ENST00000553099.5

RAB3IP-218, Transcript of RAB3A interacting protein, humanhuman

TSL 2 BASIC

Gene RAB3IP, Length 2,674 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB3IP-218ENST00000553099 PLEKHM2Q8IWE5 1019 aa11.28□□□□□ -0.6
RAB3IP-218ENST00000553099 ZNF496Q96IT1 587 aaPredicted RBP11.28□□□□□ -0.6
RAB3IP-218ENST00000553099 MAP3K2Q9Y2U5 619 aa11.28□□□□□ -0.6
RAB3IP-218ENST00000553099 PCDH11XQ9BZA7 1347 aa11.28□□□□□ -0.6
RAB3IP-218ENST00000553099 PCDH11YQ9BZA8 1340 aa11.28□□□□□ -0.6
RAB3IP-218ENST00000553099 ZCRB1Q8TBF4 217 aaKnown RBP11.28□□□□□ -0.6
RAB3IP-218ENST00000553099 DDX54Q8TDD1 881 aaKnown RBP11.28□□□□□ -0.6
RAB3IP-218ENST00000553099 ROBO1Q9Y6N7 1651 aa11.28□□□□□ -0.6
RAB3IP-218ENST00000553099 NBPF7P0C2Y1 421 aaPredicted RBP11.27□□□□□ -0.6
RAB3IP-218ENST00000553099 IL2RBP14784 551 aa11.27□□□□□ -0.6
RAB3IP-218ENST00000553099 BEND3Q5T5X7 828 aa11.27□□□□□ -0.6
RAB3IP-218ENST00000553099 C22orf23Q9BZE7 217 aa11.27□□□□□ -0.61
RAB3IP-218ENST00000553099 HYPKQ9NX55 129 aa11.27□□□□□ -0.61
RAB3IP-218ENST00000553099 GSPT1P15170 499 aaKnown RBP11.26□□□□□ -0.61
RAB3IP-218ENST00000553099 PIP4K2AP48426 406 aaPredicted RBP11.26□□□□□ -0.61
RAB3IP-218ENST00000553099 ATP8B2P98198 1209 aa11.26□□□□□ -0.61
RAB3IP-218ENST00000553099 MRC1P22897 1456 aa11.26□□□□□ -0.61
RAB3IP-218ENST00000553099 DDX21Q9NR30 783 aaKnown RBP eCLIP11.26□□□□□ -0.61
RAB3IP-218ENST00000553099 DDX58O95786 925 aaKnown RBP11.25□□□□□ -0.61
RAB3IP-218ENST00000553099 CWF19L2Q2TBE0 894 aaKnown RBP11.25□□□□□ -0.61
RAB3IP-218ENST00000553099 TTC22Q5TAA0 569 aa11.25□□□□□ -0.61
RAB3IP-218ENST00000553099 KSR2Q6VAB6 950 aa11.25□□□□□ -0.61
RAB3IP-218ENST00000553099 FMNL2Q96PY5 1086 aa11.25□□□□□ -0.61
RAB3IP-218ENST00000553099 CARD10Q9BWT7 1032 aa11.25□□□□□ -0.61
RAB3IP-218ENST00000553099 BTG4Q9NY30 223 aa11.25□□□□□ -0.61
RAB3IP-218ENST00000553099 C9orf78Q9NZ63 289 aaPredicted RBP11.25□□□□□ -0.61
RAB3IP-218ENST00000553099 TBC1D9Q6ZT07 1266 aa11.25□□□□□ -0.61
RAB3IP-218ENST00000553099 LRRCC1Q9C099 1032 aa11.25□□□□□ -0.61
RAB3IP-218ENST00000553099 USP16Q9Y5T5 823 aa11.25□□□□□ -0.61
RAB3IP-218ENST00000553099 PLEKHG2Q9H7P9 1386 aa11.25□□□□□ -0.61
RAB3IP-218ENST00000553099 SRGAP3O43295 1099 aa11.24□□□□□ -0.61
RAB3IP-218ENST00000553099 SNRPA1P09661 255 aaKnown RBP11.24□□□□□ -0.61
RAB3IP-218ENST00000553099 BECN1Q14457 450 aa11.24□□□□□ -0.61
RAB3IP-218ENST00000553099 PPP1R42Q7Z4L9 355 aa11.24□□□□□ -0.61
RAB3IP-218ENST00000553099 RIC3Q7Z5B4 369 aa11.24□□□□□ -0.61
RAB3IP-218ENST00000553099 CDC45O75419 566 aa11.24□□□□□ -0.61
RAB3IP-218ENST00000553099 SHANK3Q9BYB0 1731 aa11.24□□□□□ -0.61
RAB3IP-218ENST00000553099 PDIA6Q15084 440 aa11.23□□□□□ -0.61
RAB3IP-218ENST00000553099 TSHZ3Q63HK5 1081 aa11.23□□□□□ -0.61
RAB3IP-218ENST00000553099 SURF6O75683 361 aaKnown RBP11.23□□□□□ -0.61
RAB3IP-218ENST00000553099 XAGE3Q8WTP9 111 aa11.23□□□□□ -0.61
RAB3IP-218ENST00000553099 COPS6Q7L5N1 327 aa11.22□□□□□ -0.61
RAB3IP-218ENST00000553099 IL1RAPL2Q9NP60 686 aa11.22□□□□□ -0.61
RAB3IP-218ENST00000553099 IBTKQ9P2D0 1353 aaPredicted RBP11.22□□□□□ -0.61
RAB3IP-218ENST00000553099 SSH3Q8TE77 659 aa11.22□□□□□ -0.61
RAB3IP-218ENST00000553099 LAMB4A4D0S4 1761 aa11.22□□□□□ -0.61
RAB3IP-218ENST00000553099 PTCD1O75127 700 aaKnown RBP11.22□□□□□ -0.61
RAB3IP-218ENST00000553099 ALDH1L1O75891 902 aa11.22□□□□□ -0.61
RAB3IP-218ENST00000553099 NEXNQ0ZGT2 675 aa11.22□□□□□ -0.61
RAB3IP-218ENST00000553099 SDSP20132 328 aa11.21□□□□□ -0.61
RAB3IP-218ENST00000553099 PDE1AP54750 535 aa11.21□□□□□ -0.61
RAB3IP-218ENST00000553099 LINS1Q8NG48 757 aa11.21□□□□□ -0.61
RAB3IP-218ENST00000553099 AFDNP55196 1824 aaKnown RBP11.21□□□□□ -0.62
RAB3IP-218ENST00000553099 MX1P20591 662 aa11.21□□□□□ -0.62
RAB3IP-218ENST00000553099 OS9Q13438 667 aaPredicted RBP11.21□□□□□ -0.62
RAB3IP-218ENST00000553099 MYD88Q99836 296 aa11.21□□□□□ -0.62
RAB3IP-218ENST00000553099 ERVV-2B6SEH9 535 aa11.2□□□□□ -0.62
RAB3IP-218ENST00000553099 SLKQ9H2G2 1235 aaPredicted RBP11.2□□□□□ -0.62
RAB3IP-218ENST00000553099 COL14A1Q05707 1796 aaKnown RBP11.2□□□□□ -0.62
RAB3IP-218ENST00000553099 GRM8O00222 908 aa11.2□□□□□ -0.62
RAB3IP-218ENST00000553099 POLA2Q14181 598 aa11.2□□□□□ -0.62
RAB3IP-218ENST00000553099 RTL5Q5HYW3 569 aaPredicted RBP11.2□□□□□ -0.62
RAB3IP-218ENST00000553099 CASC1Q6TDU7 716 aa11.2□□□□□ -0.62
RAB3IP-218ENST00000553099 ANKRD13DQ6ZTN6 518 aa11.2□□□□□ -0.62
RAB3IP-218ENST00000553099 TBC1D2Q9BYX2 928 aa11.2□□□□□ -0.62
RAB3IP-218ENST00000553099 AHDC1Q5TGY3 1603 aaPredicted RBP11.19□□□□□ -0.62
RAB3IP-218ENST00000553099 TOGARAM1Q9Y4F4 1720 aa11.19□□□□□ -0.62
RAB3IP-218ENST00000553099 ADAMTS2O95450 1211 aa11.19□□□□□ -0.62
RAB3IP-218ENST00000553099 SPRYD3Q8NCJ5 442 aa11.19□□□□□ -0.62
RAB3IP-218ENST00000553099 GLI3P10071 1580 aa11.19□□□□□ -0.62
RAB3IP-218ENST00000553099 UBR2Q8IWV8 1755 aa11.19□□□□□ -0.62
RAB3IP-218ENST00000553099 ARFGEF2Q9Y6D5 1785 aa11.19□□□□□ -0.62
RAB3IP-218ENST00000553099 IGKV5-2P06315 115 aa11.19□□□□□ -0.62
RAB3IP-218ENST00000553099 NUTM1Q86Y26 1132 aa11.19□□□□□ -0.62
RAB3IP-218ENST00000553099 TMOD3Q9NYL9 352 aa11.19□□□□□ -0.62
RAB3IP-218ENST00000553099 PHLPP1O60346 1717 aa11.19□□□□□ -0.62
RAB3IP-218ENST00000553099 TRIM6-TRIM34B2RNG4 842 aa11.18□□□□□ -0.62
RAB3IP-218ENST00000553099 RBM25P49756 843 aaKnown RBP11.18□□□□□ -0.62
RAB3IP-218ENST00000553099 PIP4K2BP78356 416 aa11.18□□□□□ -0.62
RAB3IP-218ENST00000553099 COL16A1Q07092 1604 aaPredicted RBP11.18□□□□□ -0.62
RAB3IP-218ENST00000553099 NKX1-1Q15270 411 aaPredicted RBP11.18□□□□□ -0.62
RAB3IP-218ENST00000553099 AK9Q5TCS8 1911 aa11.18□□□□□ -0.62
RAB3IP-218ENST00000553099 RHPN1Q8TCX5 695 aa11.18□□□□□ -0.62
RAB3IP-218ENST00000553099 SUCLG2Q96I99 432 aa11.18□□□□□ -0.62
RAB3IP-218ENST00000553099 LTBP4Q8N2S1 1624 aa11.18□□□□□ -0.62
RAB3IP-218ENST00000553099 RILPL2Q969X0 211 aa11.18□□□□□ -0.62
RAB3IP-218ENST00000553099 METTL22Q9BUU2 404 aaPredicted RBP11.18□□□□□ -0.62
RAB3IP-218ENST00000553099 OSBPL3Q9H4L5 887 aa11.18□□□□□ -0.62
RAB3IP-218ENST00000553099 HDAC5Q9UQL6 1122 aa11.18□□□□□ -0.62
RAB3IP-218ENST00000553099 ZNF330Q9Y3S2 320 aaPredicted RBP11.18□□□□□ -0.62
RAB3IP-218ENST00000553099 NEURL1BA8MQ27 555 aa11.17□□□□□ -0.62
RAB3IP-218ENST00000553099 RAB11FIP3O75154 756 aa11.17□□□□□ -0.62
RAB3IP-218ENST00000553099 JARID2Q92833 1246 aaPredicted RBP11.17□□□□□ -0.62
RAB3IP-218ENST00000553099 KIF1BPQ96EK5 621 aa11.17□□□□□ -0.62
RAB3IP-218ENST00000553099 BICC1Q9H694 974 aaKnown RBP11.17□□□□□ -0.62
RAB3IP-218ENST00000553099 PA2G4Q9UQ80 394 aaKnown RBP11.17□□□□□ -0.62
RAB3IP-218ENST00000553099 TUBGCP6Q96RT7 1819 aa11.17□□□□□ -0.62
RAB3IP-218ENST00000553099 SALL3Q9BXA9 1300 aa11.17□□□□□ -0.62
RAB3IP-218ENST00000553099 ATP5J2-PTCD1G3V325 749 aa11.17□□□□□ -0.62
RAB3IP-218ENST00000553099 LRP10Q7Z4F1 713 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms