RNA–Protein interactions for RNA: ENST00000550136.1

PTCH1-220, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 2,388 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-220ENST00000550136 KIF18AQ8NI77 898 aa11.28□□□□□ -0.6
PTCH1-220ENST00000550136 DEF6Q9H4E7 631 aa11.28□□□□□ -0.6
PTCH1-220ENST00000550136 POLKQ9UBT6 870 aa11.28□□□□□ -0.6
PTCH1-220ENST00000550136 DDIT3P35638 169 aa11.27□□□□□ -0.6
PTCH1-220ENST00000550136 PDE3BQ13370 1112 aa11.27□□□□□ -0.6
PTCH1-220ENST00000550136 NOLC1Q14978 699 aaKnown RBP eCLIP11.27□□□□□ -0.6
PTCH1-220ENST00000550136 KLHL40Q2TBA0 621 aa11.27□□□□□ -0.6
PTCH1-220ENST00000550136 FAM53CQ9NYF3 392 aa11.27□□□□□ -0.6
PTCH1-220ENST00000550136 CCDC7Q96M83 1385 aa11.27□□□□□ -0.61
PTCH1-220ENST00000550136 MYO1CO00159 1063 aa11.27□□□□□ -0.61
PTCH1-220ENST00000550136 DEFB132Q7Z7B7 95 aa11.27□□□□□ -0.61
PTCH1-220ENST00000550136 GJD4Q96KN9 370 aaPredicted RBP11.27□□□□□ -0.61
PTCH1-220ENST00000550136 SPTLC3Q9NUV7 552 aa11.27□□□□□ -0.61
PTCH1-220ENST00000550136 PTPN23Q9H3S7 1636 aa11.27□□□□□ -0.61
PTCH1-220ENST00000550136 ANKRD30AQ9BXX3 1397 aa11.27□□□□□ -0.61
PTCH1-220ENST00000550136 A0A1B0GUL7 405 aa11.26□□□□□ -0.61
PTCH1-220ENST00000550136 IPO8O15397 1037 aaKnown RBP11.26□□□□□ -0.61
PTCH1-220ENST00000550136 ATP6V1AP38606 617 aa11.26□□□□□ -0.61
PTCH1-220ENST00000550136 SF3B2Q13435 895 aaKnown RBP11.26□□□□□ -0.61
PTCH1-220ENST00000550136 CIZ1Q9ULV3 898 aaPredicted RBP11.26□□□□□ -0.61
PTCH1-220ENST00000550136 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP11.26□□□□□ -0.61
PTCH1-220ENST00000550136 TNKS1BP1Q9C0C2 1729 aaKnown RBP11.26□□□□□ -0.61
PTCH1-220ENST00000550136 DAPK1P53355 1430 aa11.26□□□□□ -0.61
PTCH1-220ENST00000550136 MYOM2P54296 1465 aa11.26□□□□□ -0.61
PTCH1-220ENST00000550136 C1orf167Q5SNV9 1468 aa11.26□□□□□ -0.61
PTCH1-220ENST00000550136 TMTC2Q8N394 836 aa11.26□□□□□ -0.61
PTCH1-220ENST00000550136 ZNF446Q9NWS9 450 aa11.26□□□□□ -0.61
PTCH1-220ENST00000550136 MARF1Q9Y4F3 1742 aaKnown RBP11.26□□□□□ -0.61
PTCH1-220ENST00000550136 GOLGA6L22H0YM25 854 aa11.25□□□□□ -0.61
PTCH1-220ENST00000550136 CTAGE5O15320 804 aa11.25□□□□□ -0.61
PTCH1-220ENST00000550136 HSPA5P11021 654 aaKnown RBP11.25□□□□□ -0.61
PTCH1-220ENST00000550136 NCBP1Q09161 790 aaKnown RBP11.25□□□□□ -0.61
PTCH1-220ENST00000550136 PPP2R5AQ15172 486 aa11.25□□□□□ -0.61
PTCH1-220ENST00000550136 MAP9Q49MG5 647 aa11.25□□□□□ -0.61
PTCH1-220ENST00000550136 TSHZ1Q6ZSZ6 1077 aa11.25□□□□□ -0.61
PTCH1-220ENST00000550136 RPAINQ86UA6 219 aa11.25□□□□□ -0.61
PTCH1-220ENST00000550136 C10orf67Q8IYJ2 551 aa11.25□□□□□ -0.61
PTCH1-220ENST00000550136 SPRYD3Q8NCJ5 442 aa11.25□□□□□ -0.61
PTCH1-220ENST00000550136 FAM212AQ96EL1 285 aa11.25□□□□□ -0.61
PTCH1-220ENST00000550136 RBSNQ9H1K0 784 aa11.25□□□□□ -0.61
PTCH1-220ENST00000550136 ATG3Q9NT62 314 aa11.25□□□□□ -0.61
PTCH1-220ENST00000550136 RIOK3O14730 519 aaKnown RBP11.25□□□□□ -0.61
PTCH1-220ENST00000550136 FAM50AQ14320 339 aaKnown RBP11.25□□□□□ -0.61
PTCH1-220ENST00000550136 TBC1D22AQ8WUA7 517 aa11.25□□□□□ -0.61
PTCH1-220ENST00000550136 PAIP2Q9BPZ3 127 aaKnown RBP11.25□□□□□ -0.61
PTCH1-220ENST00000550136 PAXBP1Q9Y5B6 917 aa11.25□□□□□ -0.61
PTCH1-220ENST00000550136 NALCNQ8IZF0 1738 aa11.25□□□□□ -0.61
PTCH1-220ENST00000550136 SART3Q15020 963 aaKnown RBP11.24□□□□□ -0.61
PTCH1-220ENST00000550136 NFATC2IPQ8NCF5 419 aa11.24□□□□□ -0.61
PTCH1-220ENST00000550136 NRXN3Q9Y4C0 1643 aa11.24□□□□□ -0.61
PTCH1-220ENST00000550136 SYT10Q6XYQ8 523 aa11.24□□□□□ -0.61
PTCH1-220ENST00000550136 SUGP1Q8IWZ8 645 aaKnown RBP11.24□□□□□ -0.61
PTCH1-220ENST00000550136 ZKSCAN7Q9P0L1 754 aaPredicted RBP11.24□□□□□ -0.61
PTCH1-220ENST00000550136 RPS6KL1Q9Y6S9 549 aa11.24□□□□□ -0.61
PTCH1-220ENST00000550136 LRPPRCP42704 1394 aaKnown RBP11.24□□□□□ -0.61
PTCH1-220ENST00000550136 CCDC196A0A1B0GTZ2 297 aa11.23□□□□□ -0.61
PTCH1-220ENST00000550136 H0YHG0 523 aa11.23□□□□□ -0.61
PTCH1-220ENST00000550136 COQ9O75208 318 aa11.23□□□□□ -0.61
PTCH1-220ENST00000550136 CHGAP10645 457 aaKnown RBP11.23□□□□□ -0.61
PTCH1-220ENST00000550136 SARNPP82979 210 aaKnown RBP11.23□□□□□ -0.61
PTCH1-220ENST00000550136 RINLQ6ZS11 566 aa11.23□□□□□ -0.61
PTCH1-220ENST00000550136 GLI3P10071 1580 aa11.23□□□□□ -0.61
PTCH1-220ENST00000550136 TRIM66O15016 1216 aa11.23□□□□□ -0.61
PTCH1-220ENST00000550136 CT47B1P0C2W7 299 aaPredicted RBP11.23□□□□□ -0.61
PTCH1-220ENST00000550136 RAB3GAP1Q15042 981 aa11.23□□□□□ -0.61
PTCH1-220ENST00000550136 TTC31Q49AM3 519 aaPredicted RBP11.23□□□□□ -0.61
PTCH1-220ENST00000550136 RALGAPBQ86X10 1494 aa11.23□□□□□ -0.61
PTCH1-220ENST00000550136 MAPK8IP3Q9UPT6 1336 aa11.23□□□□□ -0.61
PTCH1-220ENST00000550136 IPO7O95373 1038 aaKnown RBP11.22□□□□□ -0.61
PTCH1-220ENST00000550136 TXLNBQ8N3L3 684 aa11.22□□□□□ -0.61
PTCH1-220ENST00000550136 PSDA5PKW4 1024 aaPredicted RBP11.21□□□□□ -0.61
PTCH1-220ENST00000550136 ANKRD33BA6NCL7 494 aa11.21□□□□□ -0.61
PTCH1-220ENST00000550136 PLIN1O60240 522 aa11.21□□□□□ -0.61
PTCH1-220ENST00000550136 YY1P25490 414 aa11.21□□□□□ -0.61
PTCH1-220ENST00000550136 CCDC27Q2M243 656 aa11.21□□□□□ -0.61
PTCH1-220ENST00000550136 DNAJC14Q6Y2X3 702 aaPredicted RBP11.21□□□□□ -0.61
PTCH1-220ENST00000550136 BRWD3Q6RI45 1802 aa11.21□□□□□ -0.61
PTCH1-220ENST00000550136 MAP2K2P36507 400 aa11.21□□□□□ -0.62
PTCH1-220ENST00000550136 PLCB2Q00722 1185 aa11.21□□□□□ -0.62
PTCH1-220ENST00000550136 FAM184AQ8NB25 1140 aa11.21□□□□□ -0.62
PTCH1-220ENST00000550136 EP400Q96L91 3159 aa11.21□□□□□ -0.62
PTCH1-220ENST00000550136 SETDB1Q15047 1291 aa11.2□□□□□ -0.62
PTCH1-220ENST00000550136 NOM1Q5C9Z4 860 aaKnown RBP11.2□□□□□ -0.62
PTCH1-220ENST00000550136 MCTP2Q6DN12 878 aa11.2□□□□□ -0.62
PTCH1-220ENST00000550136 ARMCX6Q7L4S7 300 aa11.2□□□□□ -0.62
PTCH1-220ENST00000550136 ANKRD20A12PQ8NF67 263 aa11.2□□□□□ -0.62
PTCH1-220ENST00000550136 NUCKS1Q9H1E3 243 aaKnown RBP11.2□□□□□ -0.62
PTCH1-220ENST00000550136 ROCK2O75116 1388 aaKnown RBP11.2□□□□□ -0.62
PTCH1-220ENST00000550136 INHBEP58166 350 aa11.2□□□□□ -0.62
PTCH1-220ENST00000550136 ZSCAN23Q3MJ62 389 aa11.2□□□□□ -0.62
PTCH1-220ENST00000550136 C1QTNF12Q5T7M4 302 aa11.2□□□□□ -0.62
PTCH1-220ENST00000550136 DDX49Q9Y6V7 483 aaKnown RBP11.2□□□□□ -0.62
PTCH1-220ENST00000550136 ADGRL2O95490 1459 aa11.2□□□□□ -0.62
PTCH1-220ENST00000550136 IQGAP3Q86VI3 1631 aa11.2□□□□□ -0.62
PTCH1-220ENST00000550136 NRDCO43847 1150 aa11.19□□□□□ -0.62
PTCH1-220ENST00000550136 EIF4G2P78344 907 aaKnown RBP eCLIP11.19□□□□□ -0.62
PTCH1-220ENST00000550136 HDAC1Q13547 482 aaPredicted RBP11.19□□□□□ -0.62
PTCH1-220ENST00000550136 CLEC17AQ6ZS10 378 aa11.19□□□□□ -0.62
PTCH1-220ENST00000550136 UNC5CLQ8IV45 518 aa11.19□□□□□ -0.62
PTCH1-220ENST00000550136 MKL1Q969V6 931 aa11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms