RNA–Protein interactions for RNA: ENST00000549341.1

DEPDC4-208, Transcript of DEP domain containing 4, humanhuman

TSL 1 (best)

Gene DEPDC4, Length 541 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-208ENST00000549341 RGPD5Q99666 1765 aa9.75□□□□□ -0.85
DEPDC4-208ENST00000549341 COL24A1Q17RW2 1714 aa9.74□□□□□ -0.85
DEPDC4-208ENST00000549341 DOT1LQ8TEK3 1739 aa9.74□□□□□ -0.85
DEPDC4-208ENST00000549341 ARHGAP33O14559 1287 aa9.74□□□□□ -0.85
DEPDC4-208ENST00000549341 PRELPP51888 382 aa9.74□□□□□ -0.85
DEPDC4-208ENST00000549341 SMIM5Q71RC9 77 aa9.74□□□□□ -0.85
DEPDC4-208ENST00000549341 C16orf71Q8IYS4 520 aaPredicted RBP9.74□□□□□ -0.85
DEPDC4-208ENST00000549341 KLRG1Q96E93 195 aa9.74□□□□□ -0.85
DEPDC4-208ENST00000549341 PALLDQ8WX93 1383 aa9.74□□□□□ -0.85
DEPDC4-208ENST00000549341 MEGF6O75095 1541 aa9.73□□□□□ -0.85
DEPDC4-208ENST00000549341 SLC24A1O60721 1099 aa9.73□□□□□ -0.85
DEPDC4-208ENST00000549341 ADGRD1Q6QNK2 874 aa9.73□□□□□ -0.85
DEPDC4-208ENST00000549341 POTEEQ6S8J3 1075 aa9.73□□□□□ -0.85
DEPDC4-208ENST00000549341 AMIGO3Q86WK7 504 aa9.73□□□□□ -0.85
DEPDC4-208ENST00000549341 FLAD1Q8NFF5 587 aa9.73□□□□□ -0.85
DEPDC4-208ENST00000549341 TMC2Q8TDI7 906 aa9.73□□□□□ -0.85
DEPDC4-208ENST00000549341 STK24Q9Y6E0 443 aa9.73□□□□□ -0.85
DEPDC4-208ENST00000549341 USP31Q70CQ4 1352 aa9.73□□□□□ -0.85
DEPDC4-208ENST00000549341 KIAA1210Q9ULL0 1709 aa9.73□□□□□ -0.85
DEPDC4-208ENST00000549341 ZCRB1Q8TBF4 217 aaKnown RBP9.72□□□□□ -0.85
DEPDC4-208ENST00000549341 TMC1Q8TDI8 760 aa9.72□□□□□ -0.85
DEPDC4-208ENST00000549341 MFRPQ9BY79 579 aa9.72□□□□□ -0.85
DEPDC4-208ENST00000549341 BCS1LQ9Y276 419 aa9.72□□□□□ -0.85
DEPDC4-208ENST00000549341 SBNO2Q9Y2G9 1366 aa9.72□□□□□ -0.85
DEPDC4-208ENST00000549341 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.71□□□□□ -0.86
DEPDC4-208ENST00000549341 TK2O00142 265 aa9.71□□□□□ -0.86
DEPDC4-208ENST00000549341 USHBP1Q8N6Y0 703 aa9.71□□□□□ -0.86
DEPDC4-208ENST00000549341 DDX10Q13206 875 aaKnown RBP9.7□□□□□ -0.86
DEPDC4-208ENST00000549341 ARHGAP27Q6ZUM4 889 aa9.7□□□□□ -0.86
DEPDC4-208ENST00000549341 RBM46Q8TBY0 533 aaKnown RBP9.7□□□□□ -0.86
DEPDC4-208ENST00000549341 IP6K1Q92551 441 aa9.7□□□□□ -0.86
DEPDC4-208ENST00000549341 PXDNLA1KZ92 1463 aa9.7□□□□□ -0.86
DEPDC4-208ENST00000549341 CICQ96RK0 1608 aaPredicted RBP9.7□□□□□ -0.86
DEPDC4-208ENST00000549341 MPRIPQ6WCQ1 1025 aa9.69□□□□□ -0.86
DEPDC4-208ENST00000549341 HDGFL2Q7Z4V5 671 aaPredicted RBP9.69□□□□□ -0.86
DEPDC4-208ENST00000549341 JMYQ8N9B5 988 aa9.69□□□□□ -0.86
DEPDC4-208ENST00000549341 KAT6BQ8WYB5 2073 aa9.68□□□□□ -0.86
DEPDC4-208ENST00000549341 LY75O60449 1722 aa9.68□□□□□ -0.86
DEPDC4-208ENST00000549341 EDC4Q6P2E9 1401 aaKnown RBP9.68□□□□□ -0.86
DEPDC4-208ENST00000549341 NSD3Q9BZ95 1437 aa9.68□□□□□ -0.86
DEPDC4-208ENST00000549341 MAP3K19Q56UN5 1328 aa9.68□□□□□ -0.86
DEPDC4-208ENST00000549341 ANP32CO43423 234 aa9.68□□□□□ -0.86
DEPDC4-208ENST00000549341 MMP10P09238 476 aa9.68□□□□□ -0.86
DEPDC4-208ENST00000549341 HSPA1AP0DMV8 641 aaKnown RBP9.68□□□□□ -0.86
DEPDC4-208ENST00000549341 HSPA1BP0DMV9 641 aaKnown RBP9.68□□□□□ -0.86
DEPDC4-208ENST00000549341 HOXC9P31274 260 aa9.68□□□□□ -0.86
DEPDC4-208ENST00000549341 AMPHP49418 695 aa9.68□□□□□ -0.86
DEPDC4-208ENST00000549341 C9orf131Q5VYM1 1079 aa9.68□□□□□ -0.86
DEPDC4-208ENST00000549341 WDR90Q96KV7 1748 aa9.68□□□□□ -0.86
DEPDC4-208ENST00000549341 C5P01031 1676 aa9.67□□□□□ -0.86
DEPDC4-208ENST00000549341 CD163L1Q9NR16 1453 aa9.67□□□□□ -0.86
DEPDC4-208ENST00000549341 A0A0G2JLW4 131 aa9.67□□□□□ -0.86
DEPDC4-208ENST00000549341 GNPATO15228 680 aa9.67□□□□□ -0.86
DEPDC4-208ENST00000549341 CDCA8Q53HL2 280 aa9.67□□□□□ -0.86
DEPDC4-208ENST00000549341 RAPGEF4Q8WZA2 1011 aa9.67□□□□□ -0.86
DEPDC4-208ENST00000549341 LTN1O94822 1766 aa9.67□□□□□ -0.86
DEPDC4-208ENST00000549341 KCPQ6ZWJ8 1503 aa9.66□□□□□ -0.86
DEPDC4-208ENST00000549341 A0A1W2PP64 1363 aa9.66□□□□□ -0.86
DEPDC4-208ENST00000549341 PLEKHG2Q9H7P9 1386 aa9.66□□□□□ -0.86
DEPDC4-208ENST00000549341 PCDH11XQ9BZA7 1347 aa9.66□□□□□ -0.86
DEPDC4-208ENST00000549341 PCDH11YQ9BZA8 1340 aa9.66□□□□□ -0.86
DEPDC4-208ENST00000549341 MON2Q7Z3U7 1717 aa9.66□□□□□ -0.86
DEPDC4-208ENST00000549341 STK25O00506 426 aa9.66□□□□□ -0.86
DEPDC4-208ENST00000549341 FCHSD2O94868 740 aa9.66□□□□□ -0.86
DEPDC4-208ENST00000549341 FSTL1Q12841 308 aa9.66□□□□□ -0.86
DEPDC4-208ENST00000549341 LINC00116Q8NCU8 138 aa9.66□□□□□ -0.86
DEPDC4-208ENST00000549341 SMG6Q86US8 1419 aaKnown RBP9.65□□□□□ -0.86
DEPDC4-208ENST00000549341 C4BP0C0L5 1744 aa9.65□□□□□ -0.86
DEPDC4-208ENST00000549341 FBLN1P23142 703 aa9.65□□□□□ -0.86
DEPDC4-208ENST00000549341 SSFA2P28290 1259 aa9.65□□□□□ -0.86
DEPDC4-208ENST00000549341 TMF1P82094 1093 aa9.65□□□□□ -0.86
DEPDC4-208ENST00000549341 COG3Q96JB2 828 aa9.65□□□□□ -0.86
DEPDC4-208ENST00000549341 SLC12A5Q9H2X9 1139 aa9.65□□□□□ -0.86
DEPDC4-208ENST00000549341 RNF181Q9P0P0 153 aa9.65□□□□□ -0.86
DEPDC4-208ENST00000549341 C10orf71Q711Q0 1435 aa9.65□□□□□ -0.87
DEPDC4-208ENST00000549341 FAM208AQ9UK61 1670 aaKnown RBP9.64□□□□□ -0.87
DEPDC4-208ENST00000549341 KDM2BQ8NHM5 1336 aa9.64□□□□□ -0.87
DEPDC4-208ENST00000549341 ST20-MTHFSA0A0A6YYL1 179 aa9.64□□□□□ -0.87
DEPDC4-208ENST00000549341 DPEP1P16444 411 aa9.64□□□□□ -0.87
DEPDC4-208ENST00000549341 TATP17735 454 aaPredicted RBP9.64□□□□□ -0.87
DEPDC4-208ENST00000549341 HMGB2P26583 209 aaKnown RBP9.64□□□□□ -0.87
DEPDC4-208ENST00000549341 NBPF6Q5VWK0 638 aa9.64□□□□□ -0.87
DEPDC4-208ENST00000549341 SMARCC1Q92922 1105 aaPredicted RBP9.64□□□□□ -0.87
DEPDC4-208ENST00000549341 NBPF4Q96M43 638 aa9.64□□□□□ -0.87
DEPDC4-208ENST00000549341 TERF2IPQ9NYB0 399 aa9.64□□□□□ -0.87
DEPDC4-208ENST00000549341 TOGARAM1Q9Y4F4 1720 aa9.64□□□□□ -0.87
DEPDC4-208ENST00000549341 USP54Q70EL1 1684 aa9.64□□□□□ -0.87
DEPDC4-208ENST00000549341 WASHC2AQ641Q2 1341 aa9.63□□□□□ -0.87
DEPDC4-208ENST00000549341 HRO43593 1189 aa9.63□□□□□ -0.87
DEPDC4-208ENST00000549341 RRS1Q15050 365 aaKnown RBP9.63□□□□□ -0.87
DEPDC4-208ENST00000549341 SMC1BQ8NDV3 1235 aa9.63□□□□□ -0.87
DEPDC4-208ENST00000549341 POLR3GLQ9BT43 218 aa9.63□□□□□ -0.87
DEPDC4-208ENST00000549341 RRAGCQ9HB90 399 aa9.63□□□□□ -0.87
DEPDC4-208ENST00000549341 RTL1A6NKG5 1358 aa9.63□□□□□ -0.87
DEPDC4-208ENST00000549341 CGNL1Q0VF96 1302 aa9.62□□□□□ -0.87
DEPDC4-208ENST00000549341 KIF7Q2M1P5 1343 aa9.62□□□□□ -0.87
DEPDC4-208ENST00000549341 LOC102724428A0A0B4J2F2 783 aa9.62□□□□□ -0.87
DEPDC4-208ENST00000549341 SIK1P57059 783 aa9.62□□□□□ -0.87
DEPDC4-208ENST00000549341 PTCD2Q8WV60 388 aaKnown RBP9.62□□□□□ -0.87
DEPDC4-208ENST00000549341 PIGBQ92521 554 aa9.62□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms