RNA–Protein interactions for RNA: ENST00000548938.5

HDAC7-228, Transcript of histone deacetylase 7, humanhuman

TSL 5

Gene HDAC7, Length 2,719 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC7-228ENST00000548938 SRCIN1Q9C0H9 1055 aa16.59■□□□□ 0.25
HDAC7-228ENST00000548938 RPAP1Q9BWH6 1393 aaPredicted RBP16.59■□□□□ 0.25
HDAC7-228ENST00000548938 TSC1Q92574 1164 aa16.58■□□□□ 0.25
HDAC7-228ENST00000548938 TSPYL4Q9UJ04 414 aa16.58■□□□□ 0.25
HDAC7-228ENST00000548938 HSP90AB2PQ58FF8 381 aa16.58■□□□□ 0.24
HDAC7-228ENST00000548938 FAM184AQ8NB25 1140 aa16.58■□□□□ 0.24
HDAC7-228ENST00000548938 PIBF1Q8WXW3 757 aa16.58■□□□□ 0.24
HDAC7-228ENST00000548938 TTC12Q9H892 705 aaPredicted RBP16.58■□□□□ 0.24
HDAC7-228ENST00000548938 IL17RAQ96F46 866 aa16.57■□□□□ 0.24
HDAC7-228ENST00000548938 CNPY2Q9Y2B0 182 aa16.57■□□□□ 0.24
HDAC7-228ENST00000548938 HCLS1P14317 486 aaPredicted RBP16.57■□□□□ 0.24
HDAC7-228ENST00000548938 TCHHQ07283 1943 aa16.57■□□□□ 0.24
HDAC7-228ENST00000548938 ADCY5O95622 1261 aa16.56■□□□□ 0.24
HDAC7-228ENST00000548938 CCDC183Q5T5S1 534 aa16.56■□□□□ 0.24
HDAC7-228ENST00000548938 NOLC1Q14978 699 aaKnown RBP eCLIP16.56■□□□□ 0.24
HDAC7-228ENST00000548938 UVSSAQ2YD98 709 aa16.56■□□□□ 0.24
HDAC7-228ENST00000548938 STAP2Q9UGK3 403 aa16.56■□□□□ 0.24
HDAC7-228ENST00000548938 TMEM87AQ8NBN3 555 aa16.55■□□□□ 0.24
HDAC7-228ENST00000548938 RBM33Q96EV2 1170 aaKnown RBP16.55■□□□□ 0.24
HDAC7-228ENST00000548938 PRDM10Q9NQV6 1147 aa16.55■□□□□ 0.24
HDAC7-228ENST00000548938 SMAP1Q8IYB5 467 aaPredicted RBP16.55■□□□□ 0.24
HDAC7-228ENST00000548938 NGDNQ8NEJ9 315 aaKnown RBP16.55■□□□□ 0.24
HDAC7-228ENST00000548938 SOX12O15370 315 aa16.54■□□□□ 0.24
HDAC7-228ENST00000548938 HSPA4P34932 840 aa16.54■□□□□ 0.24
HDAC7-228ENST00000548938 ATP8B2P98198 1209 aa16.54■□□□□ 0.24
HDAC7-228ENST00000548938 PEAK1Q9H792 1746 aa16.54■□□□□ 0.24
HDAC7-228ENST00000548938 NPHP4O75161 1426 aaPredicted RBP16.54■□□□□ 0.24
HDAC7-228ENST00000548938 FKBP5Q13451 457 aaPredicted RBP16.54■□□□□ 0.24
HDAC7-228ENST00000548938 ZNF710Q8N1W2 664 aa16.54■□□□□ 0.24
HDAC7-228ENST00000548938 IL1RAPL2Q9NP60 686 aa16.54■□□□□ 0.24
HDAC7-228ENST00000548938 LRRFIP2Q9Y608 721 aaKnown RBP16.54■□□□□ 0.24
HDAC7-228ENST00000548938 OVOS2A0A0J9YW53 1432 aa16.54■□□□□ 0.24
HDAC7-228ENST00000548938 OVOS2Q6IE36 1432 aa16.54■□□□□ 0.24
HDAC7-228ENST00000548938 GNAI3P08754 354 aa16.54■□□□□ 0.24
HDAC7-228ENST00000548938 FLIIQ13045 1269 aa16.54■□□□□ 0.24
HDAC7-228ENST00000548938 MTHFSDQ2M296 383 aaKnown RBP16.54■□□□□ 0.24
HDAC7-228ENST00000548938 LARP6Q9BRS8 491 aaKnown RBP16.54■□□□□ 0.24
HDAC7-228ENST00000548938 CCDC94Q9BW85 323 aaPredicted RBP16.54■□□□□ 0.24
HDAC7-228ENST00000548938 STK31Q9BXU1 1019 aa16.54■□□□□ 0.24
HDAC7-228ENST00000548938 CHD2O14647 1828 aaKnown RBP16.53■□□□□ 0.24
HDAC7-228ENST00000548938 MAP3K19Q56UN5 1328 aa16.53■□□□□ 0.24
HDAC7-228ENST00000548938 RGPD1P0DJD0 1748 aa16.53■□□□□ 0.24
HDAC7-228ENST00000548938 MAP4K4O95819 1239 aaPredicted RBP16.53■□□□□ 0.24
HDAC7-228ENST00000548938 NECTIN2Q92692 538 aa16.53■□□□□ 0.24
HDAC7-228ENST00000548938 PRIMPOLQ96LW4 560 aa16.53■□□□□ 0.24
HDAC7-228ENST00000548938 ANKARQ7Z5J8 1434 aa16.53■□□□□ 0.24
HDAC7-228ENST00000548938 RGPD8O14715 1765 aaPredicted RBP16.53■□□□□ 0.24
HDAC7-228ENST00000548938 ZSCAN22P10073 491 aaPredicted RBP16.52■□□□□ 0.24
HDAC7-228ENST00000548938 NUTM1Q86Y26 1132 aa16.52■□□□□ 0.24
HDAC7-228ENST00000548938 RTF1Q92541 710 aaKnown RBP16.52■□□□□ 0.24
HDAC7-228ENST00000548938 ARHGEF10O15013 1369 aa16.52■□□□□ 0.23
HDAC7-228ENST00000548938 FAM177BA6PVY3 158 aa16.52■□□□□ 0.23
HDAC7-228ENST00000548938 FIBPO43427 364 aa16.52■□□□□ 0.23
HDAC7-228ENST00000548938 UBE2HP62256 183 aa16.51■□□□□ 0.23
HDAC7-228ENST00000548938 HMGN5P82970 282 aaKnown RBP16.51■□□□□ 0.23
HDAC7-228ENST00000548938 TTC21AQ8NDW8 1320 aa16.51■□□□□ 0.23
HDAC7-228ENST00000548938 RAD50Q92878 1312 aa16.51■□□□□ 0.23
HDAC7-228ENST00000548938 SYT1P21579 422 aa16.5■□□□□ 0.23
HDAC7-228ENST00000548938 AK2P54819 239 aa16.5■□□□□ 0.23
HDAC7-228ENST00000548938 SPTLC3Q9NUV7 552 aa16.5■□□□□ 0.23
HDAC7-228ENST00000548938 SNX14Q9Y5W7 946 aa16.5■□□□□ 0.23
HDAC7-228ENST00000548938 STX6O43752 255 aa16.5■□□□□ 0.23
HDAC7-228ENST00000548938 DTNBO60941 627 aa16.5■□□□□ 0.23
HDAC7-228ENST00000548938 GTF2F1P35269 517 aaKnown RBP eCLIP16.5■□□□□ 0.232e-7■■■■□ 23.7
HDAC7-228ENST00000548938 PLCB2Q00722 1185 aa16.5■□□□□ 0.23
HDAC7-228ENST00000548938 TTC14Q96N46 770 aa16.5■□□□□ 0.23
HDAC7-228ENST00000548938 AOX1Q06278 1338 aa16.5■□□□□ 0.23
HDAC7-228ENST00000548938 KDM4AO75164 1064 aa16.49■□□□□ 0.23
HDAC7-228ENST00000548938 GIMAP6Q6P9H5 292 aa16.49■□□□□ 0.23
HDAC7-228ENST00000548938 RUFY3Q7L099 469 aa16.49■□□□□ 0.23
HDAC7-228ENST00000548938 RASEFQ8IZ41 740 aa16.49■□□□□ 0.23
HDAC7-228ENST00000548938 SOS1Q07889 1333 aaPredicted RBP16.49■□□□□ 0.23
HDAC7-228ENST00000548938 USP31Q70CQ4 1352 aa16.49■□□□□ 0.23
HDAC7-228ENST00000548938 FAM208AQ9UK61 1670 aaKnown RBP16.49■□□□□ 0.23
HDAC7-228ENST00000548938 FMN2Q9NZ56 1722 aa16.49■□□□□ 0.23
HDAC7-228ENST00000548938 SGSM2O43147 1006 aa16.48■□□□□ 0.23
HDAC7-228ENST00000548938 AP5Z1O43299 807 aa16.48■□□□□ 0.23
HDAC7-228ENST00000548938 LETM1O95202 739 aaPredicted RBP16.48■□□□□ 0.23
HDAC7-228ENST00000548938 F13A1P00488 732 aa16.48■□□□□ 0.23
HDAC7-228ENST00000548938 FUCA2Q9BTY2 467 aa16.48■□□□□ 0.23
HDAC7-228ENST00000548938 NALCNQ8IZF0 1738 aa16.48■□□□□ 0.23
HDAC7-228ENST00000548938 EPB41L2O43491 1005 aaKnown RBP16.47■□□□□ 0.23
HDAC7-228ENST00000548938 LARGE1O95461 756 aa16.47■□□□□ 0.23
HDAC7-228ENST00000548938 CPA1P15085 419 aa16.47■□□□□ 0.23
HDAC7-228ENST00000548938 USP44Q9H0E7 712 aa16.47■□□□□ 0.23
HDAC7-228ENST00000548938 CCDC30Q5VVM6 783 aa16.47■□□□□ 0.23
HDAC7-228ENST00000548938 PI4K2BQ8TCG2 481 aa16.47■□□□□ 0.23
HDAC7-228ENST00000548938 LSG1Q9H089 658 aaKnown RBP16.47■□□□□ 0.23
HDAC7-228ENST00000548938 LIMCH1Q9UPQ0 1083 aa16.47■□□□□ 0.23
HDAC7-228ENST00000548938 SMC3Q9UQE7 1217 aa16.47■□□□□ 0.23
HDAC7-228ENST00000548938 KIF3AQ9Y496 699 aa16.47■□□□□ 0.23
HDAC7-228ENST00000548938 UBTFL1P0CB47 393 aaPredicted RBP16.46■□□□□ 0.23
HDAC7-228ENST00000548938 KCNF1Q9H3M0 494 aa16.46■□□□□ 0.23
HDAC7-228ENST00000548938 PYCARDQ9ULZ3 195 aa16.46■□□□□ 0.23
HDAC7-228ENST00000548938 ADGRL3Q9HAR2 1447 aa16.46■□□□□ 0.23
HDAC7-228ENST00000548938 SSH3Q8TE77 659 aa16.46■□□□□ 0.22
HDAC7-228ENST00000548938 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.46■□□□□ 0.22
HDAC7-228ENST00000548938 SURF6O75683 361 aaKnown RBP16.45■□□□□ 0.22
HDAC7-228ENST00000548938 DNM1Q05193 864 aaKnown RBP16.45■□□□□ 0.22
HDAC7-228ENST00000548938 BCL2L12Q9HB09 334 aa16.45■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms