RNA–Protein interactions for RNA: ENST00000545432.5

RTN3-214, Transcript of reticulon 3, humanhuman

TSL 4

Gene RTN3, Length 545 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-214ENST00000545432 RASSF7Q02833 373 aa20.26■□□□□ 0.83
RTN3-214ENST00000545432 DNAJC10Q8IXB1 793 aa20.26■□□□□ 0.83
RTN3-214ENST00000545432 BCL2L12Q9HB09 334 aa20.26■□□□□ 0.83
RTN3-214ENST00000545432 NRXN2Q9P2S2 1712 aa20.25■□□□□ 0.83
RTN3-214ENST00000545432 HSPA1AP0DMV8 641 aaKnown RBP20.24■□□□□ 0.83
RTN3-214ENST00000545432 HSPA1BP0DMV9 641 aaKnown RBP20.24■□□□□ 0.83
RTN3-214ENST00000545432 AKAP4Q5JQC9 854 aa20.24■□□□□ 0.83
RTN3-214ENST00000545432 TTLL6Q8N841 843 aa20.24■□□□□ 0.83
RTN3-214ENST00000545432 SLC52A2Q9HAB3 445 aa20.24■□□□□ 0.83
RTN3-214ENST00000545432 NFKBIEO00221 500 aa20.23■□□□□ 0.83
RTN3-214ENST00000545432 SERPINB2P05120 415 aa20.23■□□□□ 0.83
RTN3-214ENST00000545432 IL13P35225 146 aa20.23■□□□□ 0.83
RTN3-214ENST00000545432 SULT6B1Q6IMI4 303 aa20.23■□□□□ 0.83
RTN3-214ENST00000545432 VSIG10Q8N0Z9 540 aa20.21■□□□□ 0.83
RTN3-214ENST00000545432 LGR6Q9HBX8 967 aa20.21■□□□□ 0.83
RTN3-214ENST00000545432 MRC1P22897 1456 aa20.2■□□□□ 0.82
RTN3-214ENST00000545432 PANK3Q9H999 370 aa20.2■□□□□ 0.82
RTN3-214ENST00000545432 COL15A1P39059 1388 aa20.2■□□□□ 0.82
RTN3-214ENST00000545432 SCN11AQ9UI33 1791 aa20.19■□□□□ 0.82
RTN3-214ENST00000545432 RNMTO43148 476 aaKnown RBP20.19■□□□□ 0.82
RTN3-214ENST00000545432 ZBTB1Q9Y2K1 713 aa20.19■□□□□ 0.82
RTN3-214ENST00000545432 AFDNP55196 1824 aaKnown RBP20.18■□□□□ 0.82
RTN3-214ENST00000545432 CAPN15O75808 1086 aa20.18■□□□□ 0.82
RTN3-214ENST00000545432 PDZRN3Q9UPQ7 1066 aa20.18■□□□□ 0.82
RTN3-214ENST00000545432 DLEC1Q9Y238 1755 aa20.18■□□□□ 0.82
RTN3-214ENST00000545432 H0YIN7 160 aa20.17■□□□□ 0.82
RTN3-214ENST00000545432 EIF5P55010 431 aaKnown RBP20.17■□□□□ 0.82
RTN3-214ENST00000545432 DPY19L2Q6NUT2 758 aa20.17■□□□□ 0.82
RTN3-214ENST00000545432 C2CD5Q86YS7 1000 aa20.17■□□□□ 0.82
RTN3-214ENST00000545432 SLC39A6Q13433 755 aa20.16■□□□□ 0.82
RTN3-214ENST00000545432 MORC1Q86VD1 984 aa20.16■□□□□ 0.82
RTN3-214ENST00000545432 LTBP3Q9NS15 1303 aa20.16■□□□□ 0.82
RTN3-214ENST00000545432 CARMIL3Q8ND23 1372 aa20.16■□□□□ 0.82
RTN3-214ENST00000545432 CREBZFQ9NS37 354 aa20.15■□□□□ 0.82
RTN3-214ENST00000545432 BRIP1Q9BX63 1249 aa20.14■□□□□ 0.81
RTN3-214ENST00000545432 A0A087WZG4 1122 aa20.11■□□□□ 0.81
RTN3-214ENST00000545432 PDE6BP35913 854 aa20.11■□□□□ 0.81
RTN3-214ENST00000545432 CHADLQ6NUI6 762 aa20.11■□□□□ 0.81
RTN3-214ENST00000545432 ERFEQ4G0M1 354 aa20.1■□□□□ 0.81
RTN3-214ENST00000545432 C21orf2O43822 256 aa20.09■□□□□ 0.81
RTN3-214ENST00000545432 MTHFSDQ2M296 383 aaKnown RBP20.09■□□□□ 0.81
RTN3-214ENST00000545432 TBC1D9BQ66K14 1250 aa20.09■□□□□ 0.81
RTN3-214ENST00000545432 PRR5LQ6MZQ0 368 aa20.09■□□□□ 0.81
RTN3-214ENST00000545432 POLR3GLQ9BT43 218 aa20.09■□□□□ 0.81
RTN3-214ENST00000545432 TIAM2Q8IVF5 1701 aa20.09■□□□□ 0.81
RTN3-214ENST00000545432 CCDC88AQ3V6T2 1871 aa20.09■□□□□ 0.81
RTN3-214ENST00000545432 PASKQ96RG2 1323 aa20.08■□□□□ 0.81
RTN3-214ENST00000545432 FER1L6Q2WGJ9 1857 aa20.08■□□□□ 0.81
RTN3-214ENST00000545432 STARD3NLO95772 234 aa20.08■□□□□ 0.81
RTN3-214ENST00000545432 CANXP27824 592 aaKnown RBP20.08■□□□□ 0.81
RTN3-214ENST00000545432 AMER1Q5JTC6 1135 aaPredicted RBP20.08■□□□□ 0.81
RTN3-214ENST00000545432 PRDM10Q9NQV6 1147 aa20.08■□□□□ 0.81
RTN3-214ENST00000545432 POTEIP0CG38 1075 aa20.07■□□□□ 0.8
RTN3-214ENST00000545432 POTEJP0CG39 1038 aa20.07■□□□□ 0.8
RTN3-214ENST00000545432 EIF4G2P78344 907 aaKnown RBP eCLIP20.07■□□□□ 0.8
RTN3-214ENST00000545432 ZNF622Q969S3 477 aaKnown RBP eCLIP20.07■□□□□ 0.85e-7■■■□□ 14.7
RTN3-214ENST00000545432 L3MBTL3Q96JM7 780 aaPredicted RBP20.07■□□□□ 0.8
RTN3-214ENST00000545432 TEX13AQ9BXU3 409 aaPredicted RBP20.07■□□□□ 0.8
RTN3-214ENST00000545432 DICER1Q9UPY3 1922 aaKnown RBP20.07■□□□□ 0.8
RTN3-214ENST00000545432 CLSPNQ9HAW4 1339 aa20.06■□□□□ 0.8
RTN3-214ENST00000545432 HSPA5P11021 654 aaKnown RBP20.06■□□□□ 0.8
RTN3-214ENST00000545432 C7orf43Q8WVR3 580 aa20.06■□□□□ 0.8
RTN3-214ENST00000545432 CNTNAP1P78357 1384 aa20.06■□□□□ 0.8
RTN3-214ENST00000545432 UBR2Q8IWV8 1755 aa20.06■□□□□ 0.8
RTN3-214ENST00000545432 ANKRD31Q8N7Z5 1873 aa20.05■□□□□ 0.8
RTN3-214ENST00000545432 DDNO94850 711 aaPredicted RBP20.05■□□□□ 0.8
RTN3-214ENST00000545432 SRGNP10124 158 aa20.05■□□□□ 0.8
RTN3-214ENST00000545432 IL6STP40189 918 aaPredicted RBP20.05■□□□□ 0.8
RTN3-214ENST00000545432 STYK1Q6J9G0 422 aa20.05■□□□□ 0.8
RTN3-214ENST00000545432 BICDL1Q6ZP65 573 aa20.05■□□□□ 0.8
RTN3-214ENST00000545432 CNKSR1Q969H4 720 aa20.05■□□□□ 0.8
RTN3-214ENST00000545432 TAOK3Q9H2K8 898 aa20.05■□□□□ 0.8
RTN3-214ENST00000545432 MKRN1Q9UHC7 482 aaKnown RBP20.05■□□□□ 0.8
RTN3-214ENST00000545432 KNSTRNQ9Y448 316 aa20.05■□□□□ 0.8
RTN3-214ENST00000545432 FOXN1O15353 648 aa20.04■□□□□ 0.8
RTN3-214ENST00000545432 ZNF496Q96IT1 587 aaPredicted RBP20.04■□□□□ 0.8
RTN3-214ENST00000545432 ITGBL1O95965 494 aaPredicted RBP20.03■□□□□ 0.8
RTN3-214ENST00000545432 HMOX1P09601 288 aa20.03■□□□□ 0.8
RTN3-214ENST00000545432 SOGA3Q5TF21 947 aa20.03■□□□□ 0.8
RTN3-214ENST00000545432 HEG1Q9ULI3 1381 aa20.03■□□□□ 0.8
RTN3-214ENST00000545432 CAMTA2O94983 1202 aa20.02■□□□□ 0.8
RTN3-214ENST00000545432 ZNF790Q6PG37 636 aa20.02■□□□□ 0.8
RTN3-214ENST00000545432 LDHDQ86WU2 507 aa20.02■□□□□ 0.8
RTN3-214ENST00000545432 IL17REQ8NFR9 667 aa20.02■□□□□ 0.8
RTN3-214ENST00000545432 TBC1D2BQ9UPU7 963 aa20.02■□□□□ 0.8
RTN3-214ENST00000545432 KLRG2A4D1S0 409 aaPredicted RBP20.01■□□□□ 0.79
RTN3-214ENST00000545432 IQCA1LA6NCM1 817 aa20.01■□□□□ 0.79
RTN3-214ENST00000545432 MASTLQ96GX5 879 aa20.01■□□□□ 0.79
RTN3-214ENST00000545432 TAF1DQ9H5J8 278 aaPredicted RBP20.01■□□□□ 0.79
RTN3-214ENST00000545432 WBP1LQ9NX94 342 aa20.01■□□□□ 0.79
RTN3-214ENST00000545432 PRPF40BQ6NWY9 871 aaKnown RBP20■□□□□ 0.79
RTN3-214ENST00000545432 TTC5Q8N0Z6 440 aa20■□□□□ 0.79
RTN3-214ENST00000545432 ZNF219Q9P2Y4 722 aaPredicted RBP20■□□□□ 0.79
RTN3-214ENST00000545432 COL11A2P13942 1736 aaPredicted RBP19.99■□□□□ 0.79
RTN3-214ENST00000545432 CCDC24Q8N4L8 307 aa19.99■□□□□ 0.79
RTN3-214ENST00000545432 SETDB2Q96T68 719 aa19.99■□□□□ 0.79
RTN3-214ENST00000545432 SLX4Q8IY92 1834 aa19.99■□□□□ 0.79
RTN3-214ENST00000545432 SCN7AQ01118 1682 aa19.98■□□□□ 0.79
RTN3-214ENST00000545432 PER1O15534 1290 aaPredicted RBP19.98■□□□□ 0.79
RTN3-214ENST00000545432 CTCFP49711 727 aaPredicted RBP19.98■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms