RNA–Protein interactions for RNA: ENST00000543233.2

CDH4-201, Transcript of cadherin 4, humanhuman

TSL 2 BASIC

Gene CDH4, Length 3,117 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH4-201ENST00000543233 PRPF40AO75400 957 aaKnown RBP13.56□□□□□ -0.24
CDH4-201ENST00000543233 NUCB1Q02818 461 aa13.56□□□□□ -0.24
CDH4-201ENST00000543233 C10orf67Q8IYJ2 551 aa13.55□□□□□ -0.24
CDH4-201ENST00000543233 C16orf71Q8IYS4 520 aaPredicted RBP13.55□□□□□ -0.24
CDH4-201ENST00000543233 KRT222Q8N1A0 295 aa13.55□□□□□ -0.24
CDH4-201ENST00000543233 THEMISQ8N1K5 641 aaPredicted RBP13.55□□□□□ -0.24
CDH4-201ENST00000543233 CDK12Q9NYV4 1490 aaPredicted RBP13.55□□□□□ -0.24
CDH4-201ENST00000543233 PLEKHG3A1L390 1219 aa13.55□□□□□ -0.24
CDH4-201ENST00000543233 HNRNPH2P55795 449 aaKnown RBP13.55□□□□□ -0.24
CDH4-201ENST00000543233 ANKRD7Q92527 254 aa13.55□□□□□ -0.24
CDH4-201ENST00000543233 EYA1Q99502 592 aa13.55□□□□□ -0.24
CDH4-201ENST00000543233 API5Q9BZZ5 524 aaKnown RBP13.55□□□□□ -0.24
CDH4-201ENST00000543233 RASSF4Q9H2L5 321 aa13.55□□□□□ -0.24
CDH4-201ENST00000543233 SMARCA5O60264 1052 aaPredicted RBP13.55□□□□□ -0.24
CDH4-201ENST00000543233 G2E3Q7L622 706 aa13.54□□□□□ -0.24
CDH4-201ENST00000543233 REREQ9P2R6 1566 aa13.54□□□□□ -0.24
CDH4-201ENST00000543233 GYS2P54840 703 aa13.54□□□□□ -0.24
CDH4-201ENST00000543233 SIRT1Q96EB6 747 aa13.54□□□□□ -0.24
CDH4-201ENST00000543233 CTNNA3Q9UI47 895 aa13.54□□□□□ -0.24
CDH4-201ENST00000543233 ANKRD26Q9UPS8 1709 aa13.54□□□□□ -0.24
CDH4-201ENST00000543233 USP6P35125 1406 aa13.54□□□□□ -0.24
CDH4-201ENST00000543233 CDC42BPGQ6DT37 1551 aa13.54□□□□□ -0.24
CDH4-201ENST00000543233 HSPA2P54652 639 aa13.53□□□□□ -0.24
CDH4-201ENST00000543233 TPRNQ4KMQ1 711 aa13.53□□□□□ -0.24
CDH4-201ENST00000543233 CT47A1Q5JQC4 288 aaPredicted RBP13.53□□□□□ -0.24
CDH4-201ENST00000543233 MEIS3Q99687 375 aa13.53□□□□□ -0.24
CDH4-201ENST00000543233 PLEKHG1Q9ULL1 1385 aa13.53□□□□□ -0.24
CDH4-201ENST00000543233 SETD1AO15047 1707 aaKnown RBP13.53□□□□□ -0.24
CDH4-201ENST00000543233 KDM4FA0A1W2PPD8 638 aa13.53□□□□□ -0.24
CDH4-201ENST00000543233 FKBP5Q13451 457 aaPredicted RBP13.53□□□□□ -0.24
CDH4-201ENST00000543233 OTUD7AQ8TE49 926 aaPredicted RBP13.53□□□□□ -0.24
CDH4-201ENST00000543233 ZNF428Q96B54 188 aa13.53□□□□□ -0.24
CDH4-201ENST00000543233 DHX16O60231 1041 aaKnown RBP13.52□□□□□ -0.24
CDH4-201ENST00000543233 DDIT3P35638 169 aa13.52□□□□□ -0.24
CDH4-201ENST00000543233 LRSAM1Q6UWE0 723 aa13.52□□□□□ -0.24
CDH4-201ENST00000543233 DDX41Q9UJV9 622 aaKnown RBP13.52□□□□□ -0.24
CDH4-201ENST00000543233 GOLGA6L6A8MZA4 724 aa13.52□□□□□ -0.25
CDH4-201ENST00000543233 FOXD4L5Q5VV16 416 aaPredicted RBP13.52□□□□□ -0.25
CDH4-201ENST00000543233 FOXD4L4Q8WXT5 416 aaPredicted RBP13.52□□□□□ -0.25
CDH4-201ENST00000543233 ST7Q9NRC1 585 aa13.52□□□□□ -0.25
CDH4-201ENST00000543233 CHL1O00533 1208 aa13.51□□□□□ -0.25
CDH4-201ENST00000543233 NCBP1Q09161 790 aaKnown RBP13.51□□□□□ -0.25
CDH4-201ENST00000543233 TECPR2O15040 1411 aa13.51□□□□□ -0.25
CDH4-201ENST00000543233 TBX22Q9Y458 520 aa13.51□□□□□ -0.25
CDH4-201ENST00000543233 ABCC4O15439 1325 aa13.51□□□□□ -0.25
CDH4-201ENST00000543233 NAA30Q147X3 362 aaPredicted RBP13.5□□□□□ -0.25
CDH4-201ENST00000543233 ARHGAP45Q92619 1136 aa13.5□□□□□ -0.25
CDH4-201ENST00000543233 USP25Q9UHP3 1055 aa13.5□□□□□ -0.25
CDH4-201ENST00000543233 FAM43BQ6ZT52 329 aaPredicted RBP13.5□□□□□ -0.25
CDH4-201ENST00000543233 DRC1Q96MC2 740 aa13.5□□□□□ -0.25
CDH4-201ENST00000543233 RBM42Q9BTD8 480 aaKnown RBP13.5□□□□□ -0.25
CDH4-201ENST00000543233 ESCO1Q5FWF5 840 aa13.5□□□□□ -0.25
CDH4-201ENST00000543233 NCAPGQ9BPX3 1015 aa13.5□□□□□ -0.25
CDH4-201ENST00000543233 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.5□□□□□ -0.25
CDH4-201ENST00000543233 ICE2Q659A1 982 aa13.49□□□□□ -0.25
CDH4-201ENST00000543233 GAS2L2Q8NHY3 880 aa13.49□□□□□ -0.25
CDH4-201ENST00000543233 GCC1Q96CN9 775 aa13.49□□□□□ -0.25
CDH4-201ENST00000543233 CARD10Q9BWT7 1032 aa13.49□□□□□ -0.25
CDH4-201ENST00000543233 CEP83Q9Y592 693 aa13.49□□□□□ -0.25
CDH4-201ENST00000543233 K7ELQ4 463 aaPredicted RBP13.48□□□□□ -0.25
CDH4-201ENST00000543233 TSHZ3Q63HK5 1081 aa13.48□□□□□ -0.25
CDH4-201ENST00000543233 ZNF526Q8TF50 670 aaPredicted RBP13.48□□□□□ -0.25
CDH4-201ENST00000543233 AK9Q5TCS8 1911 aa13.48□□□□□ -0.25
CDH4-201ENST00000543233 EIF2S2P20042 333 aaKnown RBP13.48□□□□□ -0.25
CDH4-201ENST00000543233 TBC1D9Q6ZT07 1266 aa13.48□□□□□ -0.25
CDH4-201ENST00000543233 NOL10Q9BSC4 688 aaKnown RBP13.48□□□□□ -0.25
CDH4-201ENST00000543233 TSPY26PQ9H489 355 aa13.48□□□□□ -0.25
CDH4-201ENST00000543233 LMBRD1Q9NUN5 540 aa13.48□□□□□ -0.25
CDH4-201ENST00000543233 TMEM63CQ9P1W3 806 aa13.48□□□□□ -0.25
CDH4-201ENST00000543233 OVOS2A0A0J9YW53 1432 aa13.48□□□□□ -0.25
CDH4-201ENST00000543233 OVOS2Q6IE36 1432 aa13.48□□□□□ -0.25
CDH4-201ENST00000543233 CD2BP2O95400 341 aaKnown RBP13.48□□□□□ -0.25
CDH4-201ENST00000543233 KIF18AQ8NI77 898 aa13.48□□□□□ -0.25
CDH4-201ENST00000543233 MSH6P52701 1360 aa13.48□□□□□ -0.25
CDH4-201ENST00000543233 UBR1Q8IWV7 1749 aa13.47□□□□□ -0.25
CDH4-201ENST00000543233 NCOA3Q9Y6Q9 1424 aa13.47□□□□□ -0.25
CDH4-201ENST00000543233 TRIM66O15016 1216 aa13.47□□□□□ -0.25
CDH4-201ENST00000543233 NOP2P46087 812 aaKnown RBP13.47□□□□□ -0.25
CDH4-201ENST00000543233 BRPF1P55201 1214 aaPredicted RBP13.47□□□□□ -0.25
CDH4-201ENST00000543233 PSME1Q06323 249 aa13.47□□□□□ -0.25
CDH4-201ENST00000543233 STK31Q9BXU1 1019 aa13.47□□□□□ -0.25
CDH4-201ENST00000543233 FLT4P35916 1363 aa13.46□□□□□ -0.25
CDH4-201ENST00000543233 SETD1BQ9UPS6 1966 aaKnown RBP13.46□□□□□ -0.25
CDH4-201ENST00000543233 SART3Q15020 963 aaKnown RBP13.46□□□□□ -0.25
CDH4-201ENST00000543233 SNX21Q969T3 373 aa13.46□□□□□ -0.25
CDH4-201ENST00000543233 MORC2Q9Y6X9 1032 aaPredicted RBP13.46□□□□□ -0.25
CDH4-201ENST00000543233 CCDC172P0C7W6 258 aa13.46□□□□□ -0.25
CDH4-201ENST00000543233 HOXC9P31274 260 aa13.46□□□□□ -0.25
CDH4-201ENST00000543233 GPT2Q8TD30 523 aa13.46□□□□□ -0.25
CDH4-201ENST00000543233 CHAMP1Q96JM3 812 aa13.46□□□□□ -0.25
CDH4-201ENST00000543233 NOL12Q9UGY1 213 aaKnown RBP eCLIP13.46□□□□□ -0.25
CDH4-201ENST00000543233 EXOC6BQ9Y2D4 811 aa13.46□□□□□ -0.25
CDH4-201ENST00000543233 V9GYY5 206 aaPredicted RBP13.46□□□□□ -0.25
CDH4-201ENST00000543233 PTCH1Q13635 1447 aa13.46□□□□□ -0.25
CDH4-201ENST00000543233 NEK11Q8NG66 645 aa13.46□□□□□ -0.26
CDH4-201ENST00000543233 BMP2KLQ5H9B9 411 aa13.45□□□□□ -0.26
CDH4-201ENST00000543233 ZNF592Q92610 1267 aa13.45□□□□□ -0.26
CDH4-201ENST00000543233 LRRC59Q96AG4 307 aaKnown RBP13.45□□□□□ -0.26
CDH4-201ENST00000543233 PIK3R4Q99570 1358 aa13.45□□□□□ -0.26
CDH4-201ENST00000543233 GOLIM4O00461 696 aa13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 77 ms