RNA–Protein interactions for RNA: ENST00000541713.5

PTPN1-202, Transcript of protein tyrosine phosphatase, non-receptor type 1, humanhuman

TSL 2 BASIC

Gene PTPN1, Length 3,469 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN1-202ENST00000541713 SBNO1A3KN83 1393 aa16.44■□□□□ 0.22
PTPN1-202ENST00000541713 IGSF1Q8N6C5 1336 aa16.44■□□□□ 0.22
PTPN1-202ENST00000541713 STK3Q13188 491 aa16.43■□□□□ 0.22
PTPN1-202ENST00000541713 DIAPH3Q9NSV4 1193 aa16.43■□□□□ 0.22
PTPN1-202ENST00000541713 DLG5Q8TDM6 1919 aa16.43■□□□□ 0.22
PTPN1-202ENST00000541713 VPS37CA5D8V6 355 aaPredicted RBP16.43■□□□□ 0.22
PTPN1-202ENST00000541713 CHRNA2Q15822 529 aa16.43■□□□□ 0.22
PTPN1-202ENST00000541713 KLHL40Q2TBA0 621 aa16.43■□□□□ 0.22
PTPN1-202ENST00000541713 BOLA2Q9H3K6 86 aa16.43■□□□□ 0.22
PTPN1-202ENST00000541713 PRPF40BQ6NWY9 871 aaKnown RBP16.43■□□□□ 0.22
PTPN1-202ENST00000541713 NAP1L2Q9ULW6 460 aaPredicted RBP16.43■□□□□ 0.22
PTPN1-202ENST00000541713 CHGBP05060 677 aa16.42■□□□□ 0.22
PTPN1-202ENST00000541713 AACSQ86V21 672 aa16.42■□□□□ 0.22
PTPN1-202ENST00000541713 IFIT2P09913 472 aaKnown RBP16.42■□□□□ 0.22
PTPN1-202ENST00000541713 CASTP20810 708 aaKnown RBP16.42■□□□□ 0.22
PTPN1-202ENST00000541713 MSNP26038 577 aaKnown RBP16.42■□□□□ 0.22
PTPN1-202ENST00000541713 FAM173BQ6P4H8 233 aa16.42■□□□□ 0.22
PTPN1-202ENST00000541713 CCDC83Q8IWF9 413 aa16.42■□□□□ 0.22
PTPN1-202ENST00000541713 ZNF830Q96NB3 372 aaPredicted RBP16.42■□□□□ 0.22
PTPN1-202ENST00000541713 KIAA0232Q92628 1395 aa16.42■□□□□ 0.22
PTPN1-202ENST00000541713 RBM10P98175 930 aaKnown RBP16.42■□□□□ 0.22
PTPN1-202ENST00000541713 COL9A3Q14050 684 aaPredicted RBP16.42■□□□□ 0.22
PTPN1-202ENST00000541713 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP16.41■□□□□ 0.22
PTPN1-202ENST00000541713 KNDC1Q76NI1 1749 aa16.41■□□□□ 0.22
PTPN1-202ENST00000541713 OVOS2A0A0J9YW53 1432 aa16.41■□□□□ 0.22
PTPN1-202ENST00000541713 OVOS2Q6IE36 1432 aa16.41■□□□□ 0.22
PTPN1-202ENST00000541713 CDC42BPGQ6DT37 1551 aa16.41■□□□□ 0.22
PTPN1-202ENST00000541713 MAP3K5Q99683 1374 aa16.41■□□□□ 0.22
PTPN1-202ENST00000541713 A0A0G2JS52 829 aa16.4■□□□□ 0.22
PTPN1-202ENST00000541713 ATP5J2-PTCD1G3V325 749 aa16.4■□□□□ 0.22
PTPN1-202ENST00000541713 PTCD1O75127 700 aaKnown RBP16.4■□□□□ 0.22
PTPN1-202ENST00000541713 EIF4A1P60842 406 aaKnown RBP16.4■□□□□ 0.22
PTPN1-202ENST00000541713 RIC3Q7Z5B4 369 aa16.4■□□□□ 0.22
PTPN1-202ENST00000541713 JAKMIP1Q96N16 626 aaKnown RBP16.4■□□□□ 0.22
PTPN1-202ENST00000541713 CCDC85AQ96PX6 553 aaPredicted RBP16.4■□□□□ 0.22
PTPN1-202ENST00000541713 CNPY2Q9Y2B0 182 aa16.4■□□□□ 0.22
PTPN1-202ENST00000541713 AXIN2Q9Y2T1 843 aa16.39■□□□□ 0.21
PTPN1-202ENST00000541713 TBX22Q9Y458 520 aa16.39■□□□□ 0.21
PTPN1-202ENST00000541713 TTC21AQ8NDW8 1320 aa16.39■□□□□ 0.21
PTPN1-202ENST00000541713 PTH1RQ03431 593 aa16.39■□□□□ 0.21
PTPN1-202ENST00000541713 NCOA3Q9Y6Q9 1424 aa16.38■□□□□ 0.21
PTPN1-202ENST00000541713 ADCK5Q3MIX3 580 aa16.38■□□□□ 0.21
PTPN1-202ENST00000541713 CLASRPQ8N2M8 674 aaKnown RBP16.38■□□□□ 0.21
PTPN1-202ENST00000541713 FAM227BQ96M60 508 aa16.38■□□□□ 0.21
PTPN1-202ENST00000541713 TLR7Q9NYK1 1049 aaKnown RBP16.38■□□□□ 0.21
PTPN1-202ENST00000541713 LARGE1O95461 756 aa16.38■□□□□ 0.21
PTPN1-202ENST00000541713 AK2P54819 239 aa16.38■□□□□ 0.21
PTPN1-202ENST00000541713 ANKRD24Q8TF21 1146 aa16.38■□□□□ 0.21
PTPN1-202ENST00000541713 R3HCC1Q9Y3T6 440 aaKnown RBP16.38■□□□□ 0.21
PTPN1-202ENST00000541713 RIMBP3CA6NJZ7 1639 aa16.37■□□□□ 0.21
PTPN1-202ENST00000541713 RIMBP3BA6NNM3 1639 aa16.37■□□□□ 0.21
PTPN1-202ENST00000541713 RIMBP3Q9UFD9 1639 aa16.37■□□□□ 0.21
PTPN1-202ENST00000541713 DIP2BQ9P265 1576 aa16.37■□□□□ 0.21
PTPN1-202ENST00000541713 GCP02774 474 aa16.37■□□□□ 0.21
PTPN1-202ENST00000541713 USP48Q86UV5 1035 aa16.37■□□□□ 0.21
PTPN1-202ENST00000541713 SLFNL1Q499Z3 407 aa16.36■□□□□ 0.21
PTPN1-202ENST00000541713 ARHGEF10O15013 1369 aa16.36■□□□□ 0.21
PTPN1-202ENST00000541713 CNTROBQ8N137 903 aa16.36■□□□□ 0.21
PTPN1-202ENST00000541713 NFATC2IPQ8NCF5 419 aa16.36■□□□□ 0.21
PTPN1-202ENST00000541713 SIRT1Q96EB6 747 aa16.36■□□□□ 0.21
PTPN1-202ENST00000541713 IBTKQ9P2D0 1353 aaPredicted RBP16.36■□□□□ 0.21
PTPN1-202ENST00000541713 DNTTIP2Q5QJE6 756 aaKnown RBP16.36■□□□□ 0.21
PTPN1-202ENST00000541713 KIF1BPQ96EK5 621 aa16.36■□□□□ 0.21
PTPN1-202ENST00000541713 LRRC2Q9BYS8 371 aa16.36■□□□□ 0.21
PTPN1-202ENST00000541713 CWC22Q9HCG8 908 aaKnown RBP16.36■□□□□ 0.21
PTPN1-202ENST00000541713 CLCN1P35523 988 aa16.35■□□□□ 0.21
PTPN1-202ENST00000541713 DNAJC2Q99543 621 aaKnown RBP16.35■□□□□ 0.21
PTPN1-202ENST00000541713 SMC3Q9UQE7 1217 aa16.35■□□□□ 0.21
PTPN1-202ENST00000541713 SIPA1L2Q9P2F8 1722 aaPredicted RBP16.35■□□□□ 0.21
PTPN1-202ENST00000541713 PLEKHO1Q53GL0 409 aaPredicted RBP16.35■□□□□ 0.21
PTPN1-202ENST00000541713 SNX14Q9Y5W7 946 aa16.35■□□□□ 0.21
PTPN1-202ENST00000541713 SPATA31D1Q6ZQQ2 1576 aa16.35■□□□□ 0.21
PTPN1-202ENST00000541713 KDM4AO75164 1064 aa16.35■□□□□ 0.21
PTPN1-202ENST00000541713 CEBPZQ03701 1054 aaKnown RBP16.35■□□□□ 0.21
PTPN1-202ENST00000541713 BEND3Q5T5X7 828 aa16.35■□□□□ 0.21
PTPN1-202ENST00000541713 C17orf53Q8N3J3 647 aaPredicted RBP16.35■□□□□ 0.21
PTPN1-202ENST00000541713 ANKRD26Q9UPS8 1709 aa16.34■□□□□ 0.21
PTPN1-202ENST00000541713 PLEKHG1Q9ULL1 1385 aa16.34■□□□□ 0.21
PTPN1-202ENST00000541713 MYD88Q99836 296 aa16.34■□□□□ 0.21
PTPN1-202ENST00000541713 FSD1Q9BTV5 496 aa16.34■□□□□ 0.21
PTPN1-202ENST00000541713 BICC1Q9H694 974 aaKnown RBP16.34■□□□□ 0.21
PTPN1-202ENST00000541713 G3BP1Q13283 466 aaKnown RBP eCLIP16.34■□□□□ 0.212e-10■■□□□ 14.4
PTPN1-202ENST00000541713 IP6K1Q92551 441 aa16.34■□□□□ 0.21
PTPN1-202ENST00000541713 NRXN3Q9Y4C0 1643 aa16.34■□□□□ 0.21
PTPN1-202ENST00000541713 CAMK4Q16566 473 aa16.33■□□□□ 0.21
PTPN1-202ENST00000541713 PROSER2Q86WR7 435 aaPredicted RBP16.33■□□□□ 0.21
PTPN1-202ENST00000541713 SSH3Q8TE77 659 aa16.33■□□□□ 0.21
PTPN1-202ENST00000541713 FBXW7Q969H0 707 aa16.33■□□□□ 0.21
PTPN1-202ENST00000541713 TAF6LQ9Y6J9 622 aa16.33■□□□□ 0.21
PTPN1-202ENST00000541713 ANKLE2Q86XL3 938 aa16.33■□□□□ 0.2
PTPN1-202ENST00000541713 SUCLG2Q96I99 432 aa16.33■□□□□ 0.2
PTPN1-202ENST00000541713 TFIP11Q9UBB9 837 aaKnown RBP16.33■□□□□ 0.2
PTPN1-202ENST00000541713 PI4K2BQ8TCG2 481 aa16.32■□□□□ 0.2
PTPN1-202ENST00000541713 PEAK1Q9H792 1746 aa16.32■□□□□ 0.2
PTPN1-202ENST00000541713 FGD1P98174 961 aa16.32■□□□□ 0.2
PTPN1-202ENST00000541713 USP31Q70CQ4 1352 aa16.32■□□□□ 0.2
PTPN1-202ENST00000541713 CCDC173Q0VFZ6 552 aa16.32■□□□□ 0.2
PTPN1-202ENST00000541713 GIMAP6Q6P9H5 292 aa16.32■□□□□ 0.2
PTPN1-202ENST00000541713 COPS6Q7L5N1 327 aa16.32■□□□□ 0.2
PTPN1-202ENST00000541713 NEUROD6Q96NK8 337 aa16.32■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms