RNA–Protein interactions for RNA: ENST00000541410.1

CLIP1-216, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,379 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-216ENST00000541410 ZCRB1Q8TBF4 217 aaKnown RBP18.05■□□□□ 0.48
CLIP1-216ENST00000541410 KAT6BQ8WYB5 2073 aa18.05■□□□□ 0.48
CLIP1-216ENST00000541410 PKD1L3Q7Z443 1732 aa18.05■□□□□ 0.48
CLIP1-216ENST00000541410 ATP8B2P98198 1209 aa18.04■□□□□ 0.48
CLIP1-216ENST00000541410 PDIA6Q15084 440 aa18.04■□□□□ 0.48
CLIP1-216ENST00000541410 TTC5Q8N0Z6 440 aa18.04■□□□□ 0.48
CLIP1-216ENST00000541410 C22orf23Q9BZE7 217 aa18.04■□□□□ 0.48
CLIP1-216ENST00000541410 NHSL1Q5SYE7 1610 aa18.04■□□□□ 0.48
CLIP1-216ENST00000541410 N4BP2Q86UW6 1770 aaPredicted RBP18.04■□□□□ 0.48
CLIP1-216ENST00000541410 ABCC6O95255 1503 aa18.03■□□□□ 0.48
CLIP1-216ENST00000541410 PXDNLA1KZ92 1463 aa18.03■□□□□ 0.48
CLIP1-216ENST00000541410 TBC1D9Q6ZT07 1266 aa18.03■□□□□ 0.48
CLIP1-216ENST00000541410 BTG4Q9NY30 223 aa18.03■□□□□ 0.48
CLIP1-216ENST00000541410 IL2RBP14784 551 aa18.02■□□□□ 0.48
CLIP1-216ENST00000541410 TTC22Q5TAA0 569 aa18.02■□□□□ 0.47
CLIP1-216ENST00000541410 PPP1R42Q7Z4L9 355 aa18.02■□□□□ 0.47
CLIP1-216ENST00000541410 DDX21Q9NR30 783 aaKnown RBP eCLIP18.02■□□□□ 0.47
CLIP1-216ENST00000541410 KSR2Q6VAB6 950 aa18.01■□□□□ 0.47
CLIP1-216ENST00000541410 HYPKQ9NX55 129 aa18.01■□□□□ 0.47
CLIP1-216ENST00000541410 CHMP4AQ9BY43 222 aa18.01■□□□□ 0.47
CLIP1-216ENST00000541410 PCDH11XQ9BZA7 1347 aa18■□□□□ 0.47
CLIP1-216ENST00000541410 PCDH11YQ9BZA8 1340 aa18■□□□□ 0.47
CLIP1-216ENST00000541410 CARD10Q9BWT7 1032 aa18■□□□□ 0.47
CLIP1-216ENST00000541410 IL1RAPL2Q9NP60 686 aa18■□□□□ 0.47
CLIP1-216ENST00000541410 SRGAP3O43295 1099 aa17.99■□□□□ 0.47
CLIP1-216ENST00000541410 HSP90AB1P08238 724 aaKnown RBP17.99■□□□□ 0.47
CLIP1-216ENST00000541410 XAGE3Q8WTP9 111 aa17.99■□□□□ 0.47
CLIP1-216ENST00000541410 C9orf78Q9NZ63 289 aaPredicted RBP17.99■□□□□ 0.47
CLIP1-216ENST00000541410 PARP4Q9UKK3 1724 aaKnown RBP17.99■□□□□ 0.47
CLIP1-216ENST00000541410 ROBO1Q9Y6N7 1651 aa17.99■□□□□ 0.47
CLIP1-216ENST00000541410 COPS6Q7L5N1 327 aa17.99■□□□□ 0.47
CLIP1-216ENST00000541410 PTCD1O75127 700 aaKnown RBP17.98■□□□□ 0.47
CLIP1-216ENST00000541410 SNRPA1P09661 255 aaKnown RBP17.98■□□□□ 0.47
CLIP1-216ENST00000541410 RIC3Q7Z5B4 369 aa17.98■□□□□ 0.47
CLIP1-216ENST00000541410 FMNL2Q96PY5 1086 aa17.98■□□□□ 0.47
CLIP1-216ENST00000541410 LRRCC1Q9C099 1032 aa17.98■□□□□ 0.47
CLIP1-216ENST00000541410 SURF6O75683 361 aaKnown RBP17.98■□□□□ 0.47
CLIP1-216ENST00000541410 SPRYD3Q8NCJ5 442 aa17.98■□□□□ 0.47
CLIP1-216ENST00000541410 SDSP20132 328 aa17.97■□□□□ 0.47
CLIP1-216ENST00000541410 JARID2Q92833 1246 aaPredicted RBP17.97■□□□□ 0.47
CLIP1-216ENST00000541410 MRC1P22897 1456 aa17.96■□□□□ 0.47
CLIP1-216ENST00000541410 CDC45O75419 566 aa17.96■□□□□ 0.47
CLIP1-216ENST00000541410 SSH3Q8TE77 659 aa17.96■□□□□ 0.47
CLIP1-216ENST00000541410 IBTKQ9P2D0 1353 aaPredicted RBP17.96■□□□□ 0.47
CLIP1-216ENST00000541410 PDE1AP54750 535 aa17.96■□□□□ 0.47
CLIP1-216ENST00000541410 DDX58O95786 925 aaKnown RBP17.95■□□□□ 0.46
CLIP1-216ENST00000541410 TBC1D2Q9BYX2 928 aa17.95■□□□□ 0.46
CLIP1-216ENST00000541410 SLKQ9H2G2 1235 aaPredicted RBP17.95■□□□□ 0.46
CLIP1-216ENST00000541410 SHANK3Q9BYB0 1731 aa17.95■□□□□ 0.46
CLIP1-216ENST00000541410 NUTM1Q86Y26 1132 aa17.95■□□□□ 0.46
CLIP1-216ENST00000541410 MYD88Q99836 296 aa17.95■□□□□ 0.46
CLIP1-216ENST00000541410 ADAMTS2O95450 1211 aa17.94■□□□□ 0.46
CLIP1-216ENST00000541410 IGKV5-2P06315 115 aa17.94■□□□□ 0.46
CLIP1-216ENST00000541410 POLA2Q14181 598 aa17.93■□□□□ 0.46
CLIP1-216ENST00000541410 BECN1Q14457 450 aa17.93■□□□□ 0.46
CLIP1-216ENST00000541410 LINS1Q8NG48 757 aa17.93■□□□□ 0.46
CLIP1-216ENST00000541410 PA2G4Q9UQ80 394 aaKnown RBP17.93■□□□□ 0.46
CLIP1-216ENST00000541410 ALDH1L1O75891 902 aa17.93■□□□□ 0.46
CLIP1-216ENST00000541410 PIP4K2BP78356 416 aa17.93■□□□□ 0.46
CLIP1-216ENST00000541410 LRP10Q7Z4F1 713 aa17.93■□□□□ 0.46
CLIP1-216ENST00000541410 SUCLG2Q96I99 432 aa17.93■□□□□ 0.46
CLIP1-216ENST00000541410 ATP5J2-PTCD1G3V325 749 aa17.92■□□□□ 0.46
CLIP1-216ENST00000541410 GRM8O00222 908 aa17.92■□□□□ 0.46
CLIP1-216ENST00000541410 MX1P20591 662 aa17.92■□□□□ 0.46
CLIP1-216ENST00000541410 ANKRD13DQ6ZTN6 518 aa17.92■□□□□ 0.46
CLIP1-216ENST00000541410 A1BGP04217 495 aa17.91■□□□□ 0.46
CLIP1-216ENST00000541410 ERVV-2B6SEH9 535 aa17.91■□□□□ 0.46
CLIP1-216ENST00000541410 KAZALD1Q96I82 304 aa17.91■□□□□ 0.46
CLIP1-216ENST00000541410 NBPF26B4DH59 902 aa17.9■□□□□ 0.46
CLIP1-216ENST00000541410 OS9Q13438 667 aaPredicted RBP17.9■□□□□ 0.46
CLIP1-216ENST00000541410 NBPF14Q5TI25 921 aa17.9■□□□□ 0.46
CLIP1-216ENST00000541410 NBPF10Q6P3W6 841 aaKnown RBP17.9■□□□□ 0.46
CLIP1-216ENST00000541410 NBPF15Q8N660 670 aa17.9■□□□□ 0.46
CLIP1-216ENST00000541410 RHPN1Q8TCX5 695 aa17.9■□□□□ 0.46
CLIP1-216ENST00000541410 BICC1Q9H694 974 aaKnown RBP17.9■□□□□ 0.46
CLIP1-216ENST00000541410 SALL3Q9BXA9 1300 aa17.9■□□□□ 0.46
CLIP1-216ENST00000541410 NUTM2BA6NNL0 878 aaPredicted RBP17.9■□□□□ 0.46
CLIP1-216ENST00000541410 NEURL1BA8MQ27 555 aa17.9■□□□□ 0.46
CLIP1-216ENST00000541410 NUTM2EB1AL46 878 aaPredicted RBP17.9■□□□□ 0.46
CLIP1-216ENST00000541410 NEXNQ0ZGT2 675 aa17.9■□□□□ 0.46
CLIP1-216ENST00000541410 NUTM2AQ8IVF1 878 aaPredicted RBP17.9■□□□□ 0.46
CLIP1-216ENST00000541410 GLI3P10071 1580 aa17.9■□□□□ 0.46
CLIP1-216ENST00000541410 MAP4K4O95819 1239 aaPredicted RBP17.89■□□□□ 0.45
CLIP1-216ENST00000541410 RBM25P49756 843 aaKnown RBP17.89■□□□□ 0.45
CLIP1-216ENST00000541410 NKX1-1Q15270 411 aaPredicted RBP17.89■□□□□ 0.45
CLIP1-216ENST00000541410 RILPL2Q969X0 211 aa17.89■□□□□ 0.45
CLIP1-216ENST00000541410 RBM42Q9BTD8 480 aaKnown RBP17.89■□□□□ 0.45
CLIP1-216ENST00000541410 ZNF330Q9Y3S2 320 aaPredicted RBP17.89■□□□□ 0.45
CLIP1-216ENST00000541410 TRIM6-TRIM34B2RNG4 842 aa17.89■□□□□ 0.45
CLIP1-216ENST00000541410 METTL22Q9BUU2 404 aaPredicted RBP17.89■□□□□ 0.45
CLIP1-216ENST00000541410 TOGARAM1Q9Y4F4 1720 aa17.88■□□□□ 0.45
CLIP1-216ENST00000541410 RTL5Q5HYW3 569 aaPredicted RBP17.88■□□□□ 0.45
CLIP1-216ENST00000541410 UNC5CLQ8IV45 518 aa17.88■□□□□ 0.45
CLIP1-216ENST00000541410 KLHDC4Q8TBB5 520 aa17.88■□□□□ 0.45
CLIP1-216ENST00000541410 KIF2CQ99661 725 aa17.88■□□□□ 0.45
CLIP1-216ENST00000541410 TMOD3Q9NYL9 352 aa17.88■□□□□ 0.45
CLIP1-216ENST00000541410 ASAP1Q9ULH1 1129 aa17.88■□□□□ 0.45
CLIP1-216ENST00000541410 PLEKHG2Q9H7P9 1386 aa17.88■□□□□ 0.45
CLIP1-216ENST00000541410 TTLL7Q6ZT98 887 aa17.88■□□□□ 0.45
CLIP1-216ENST00000541410 OSBPL3Q9H4L5 887 aa17.88■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms